Clone Sequence Records
BO06335.3prime Sequence
961 bp (777 high quality bases) assembled on 2005-12-03
> BO06335.3prime
ATGGTCTAGAAAGCTTGCTTTTGGCGGAGCACAGGCGATCGGTAGCCACT
GGCAAGCCTCCGATGGCGGCGTGTGCATCTGGCCGGGCAGCATCTTCACC
AGACGACGATCGTCGTCGAACTTTTCGGCAGCACAGAGCGTGAGTTCGCG
CTGCCGGAAGATGAGTGCGTCGCCCGCGTAGGCGATGGTCCAGGTGCTGG
TCGAGGAGCTGGGACTGCCGGAGCGCAGGGCGGCCAAGCGATTGCCCTGG
CTGGGATCGACGAAGTAGTACCACTTGAAGAGCTCGCTACGCAGCGTGAA
GAGCGGCGTGGAGTGCTGCTCCTGGACGAAGGCGCGTGTCAGGCCCGCGG
TATCGGTGAAGTTCTTCTCGCGCCAGGAGAACATCTGCCGCCCATTCAGA
CCGTAGTTCCACTCGTCCGTTATGGTCGTGTAGATGTACTCGCGATCGGA
GCGACTCAGCAGGCAGAATCCCTGCGGATCGAAGAGCAAGTCTAGAACGG
GCGGCAGACGTTGGCTCAATGCCTCCACTCGCTTCTGGAGATCCGCATCG
ACGCTGGCGTACATGTGATGGCTCCGGATCTTGCTGACCATGTGCGCGAC
GTTGAACAGGTACGCCTCGCTGCTGTCCTGCATGGCCTGATAGCGCCAGA
AGAGCGCCAATTGCGCCTCGATCATCGTGCGAAAGCTGACCTCGTCGCGA
TCCGCGTACAGTTGCTCCAGCTGCTGCACCAGCTTCTCCAGCGGTCGATG
GAAGTACACGTCCTCGATGGCGTGCACCAGAATGTCCCTGACCAGGGCGG
GCTCCACACTGGCCGCTATGTACATACCGTATGTCTGAATGCTCTCCTCG
GCGTTCAACAGATTGGGCAGCCGCTGGGCCATGAGGGTCCGCAGGTGGCG
TCGCACCTCCTGCTGCAGCTCGCAGGCAGATCGACCCGTGGAGCCGCTAC
TGCACTGCACA
BO06335.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32573-PA | 1179 | CG32573-RA | 234..1176 | 961..19 | 4665 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42512-RA | 1782 | CG42512-RA | 729..1671 | 961..19 | 4685 | 99.8 | Minus |
| CG32573-RC | 1332 | CG32573-RC | 279..1221 | 961..19 | 4685 | 99.8 | Minus |
| CG32573-RA | 1782 | CG32573-RA | 729..1671 | 961..19 | 4685 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16652222..16653164 | 961..19 | 4685 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:56:00 has no hits.
BO06335.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:39 Download gff for
BO06335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-PA | 235..1179 | 16..960 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:16 Download gff for
BO06335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-PA | 235..1179 | 16..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:03 Download gff for
BO06335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-RA | 730..1676 | 13..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:34:46 Download gff for
BO06335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-RA | 730..1676 | 13..960 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:34:46 Download gff for
BO06335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16652223..16653169 | 13..960 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:03 Download gff for
BO06335.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16546256..16547202 | 13..960 | 99 | | Minus |
BO06335.5prime Sequence
948 bp (796 high quality bases) assembled on 2005-12-03
> BO06335.5prime
GAAGTTATCAGTCGACATGATCCAGCTGCTCCAGTTGCTTCTATGTACTA
TTCCACTCGTTGTGGGCGAGGTTCTGCCCCTGCAACTCGATTTGGACAAC
AGTCAAATTACCATACGGCGAAGTGCCAGTCGCGATGACAAATTGCAGGT
ATTCCACAGCATCTGGGGCGCCATTCGCTCCGACTTCGCCACCGATACGG
ACAAGGTGAAGGGCCTGTACAGTCAGCTGGGCGGATATATTCGCGACGAT
GTGCAGTGCAGTAGCGGCTCCACGGGTCGATCTGCCTGCGAGCTGCAGCA
GGAGGTGCGACGCCACCTGCGGACCCTCATGGCCCAGCGGCTGGCCAATC
TGTTGAACGCCGAGGAGAGCATTCAGACATACGGTATGTACATAGCGGCC
AGTGTGGAGCCCGCCCTGGTCAGGGACATTCTGGTGCACGCCATCGAGGA
CGTGTACTTCCATCGACCGCTGGAGAAGCTGGTGCAGCAGCTGGAGCAAC
TGTACGCGGATCGCGACGAGGTCAGCTTTCGCACGATGATCGAGGCGCAA
TTGGCGCTCTTCTGGCGCTATCAGGCCATGCAGGACAGCAGCGAGGCGTA
CCTGTTCAACGTCGCGCACATGGTCAGCAAGATCCGGAGCCATCACATGT
ACGCCAGCGTCGATGCGGATCTCCAGAAGCGAGTGGAGGCATTGAGCCAA
CGTCTGCCGCCCGTTCTAGACTTGCTCTTCGATCCGCAGGGATTCTGCCT
GCTGAGTCGCTCCGATCGCGAGTACATCTACACGACCATAACGGACGAGT
GGAACTACGGTCTGAATGGGCCGCAGATGTTCTCCTGGCGCGAGAAGAAC
TTCACCGATACCGCGGGCCTGACACGCGCCTTCGTCCAGGAGCAGCACTC
CACGCCGCTCTTCACGCTGCGTAGCGAGCTCTTCAAGTGGTACTACTT
BO06335.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32573-PA | 1179 | CG32573-RA | 1..932 | 17..948 | 4610 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42512-RA | 1782 | CG42512-RA | 496..1427 | 17..948 | 4630 | 99.8 | Plus |
| CG32573-RC | 1332 | CG32573-RC | 46..977 | 17..948 | 4630 | 99.8 | Plus |
| CG32573-RA | 1782 | CG32573-RA | 496..1427 | 17..948 | 4630 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16652079..16652920 | 107..948 | 4180 | 99.8 | Plus |
| X | 23542271 | X | 16651927..16652016 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:02:48 has no hits.
BO06335.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:40 Download gff for
BO06335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-PA | 1..932 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:18 Download gff for
BO06335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-PA | 1..932 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:36 Download gff for
BO06335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-RA | 489..1427 | 9..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:49:11 Download gff for
BO06335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-RA | 489..1427 | 9..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:49:11 Download gff for
BO06335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16651920..16652016 | 9..106 | 96 | -> | Plus |
| X | 16652079..16652920 | 107..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:36 Download gff for
BO06335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16545953..16546049 | 9..106 | 96 | -> | Plus |
| arm_X | 16546112..16546953 | 107..948 | 99 | | Plus |
BO06335.complete Sequence
1210 bp (1210 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630352
> BO06335.complete
GAAGTTATCAGTCGACATGATCCAGCTGCTCCAGTTGCTTCTATGTACTA
TTCCACTCGTTGTGGGCGAGGTTCTGCCCCTGCAACTCGATTTGGACAAC
AGTCAAATTACCATACGGCGAAGTGCCAGTCGCGATGACAAATTGCAGGT
ATTCCACAGCATCTGGGGCGCCATTCGCTCCGACTTCGCCACCGATACGG
ACAAGGTGAAGGGCCTGTACAGTCAGCTGGGCGGATATATTCGCGACGAT
GTGCAGTGCAGTAGCGGCTCCACGGGTCGATCTGCCTGCGAGCTGCAGCA
GGAGGTGCGACGCCACCTGCGGACCCTCATGGCCCAGCGGCTGGCCAATC
TGTTGAACGCCGAGGAGAGCATTCAGACATACGGTATGTACATAGCGGCC
AGTGTGGAGCCCGCCCTGGTCAGGGACATTCTGGTGCACGCCATCGAGGA
CGTGTACTTCCATCGACCGCTGGAGAAGCTGGTGCAGCAGCTGGAGCAAC
TGTACGCGGATCGCGACGAGGTCAGCTTTCGCACGATGATCGAGGCGCAA
TTGGCGCTCTTCTGGCGCTATCAGGCCATGCAGGACAGCAGCGAGGCGTA
CCTGTTCAACGTCGCGCACATGGTCAGCAAGATCCGGAGCCATCACATGT
ACGCCAGCGTCGATGCGGATCTCCAGAAGCGAGTGGAGGCATTGAGCCAA
CGTCTGCCGCCCGTTCTAGACTTGCTCTTCGATCCGCAGGGATTCTGCCT
GCTGAGTCGCTCCGATCGCGAGTACATCTACACGACCATAACGGACGAGT
GGAACTACGGTCTGAATGGGCGGCAGATGTTCTCCTGGCGCGAGAAGAAC
TTCACCGATACCGCGGGCCTGACACGCGCCTTCGTCCAGGAGCAGCACTC
CACGCCGCTCTTCACGCTGCGTAGCGAGCTCTTCAAGTGGTACTACTTCG
TCGATCCCAGCCAGGGCAATCGCTTGGCCGCCCTGCGCTCCGGCAGTCCC
AGCTCCTCGACCAGCACCTGGACCATCGCCTACGCGGGCGACGCACTCAT
CTTCCGGCAGCGCGAACTCACGCTCTGTGCTGCCGAAAAGTTCGACGACG
ATCGTCGTCTGGTGAAGATGCTGCCCGGCCAGATGCACACGCCGCCATCG
GAGGCTTGCCAGTGGCTACCGATCGCCTGTGCTCCGCCAAAAGCAAGCTT
TCTAGACCAT
BO06335.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32573-RC | 1179 | CG32573-PC | 1..1176 | 17..1192 | 5865 | 99.9 | Plus |
| CG32573-RA | 1179 | CG32573-PA | 1..1176 | 17..1192 | 5865 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42512-RA | 1782 | CG42512-RA | 496..1671 | 17..1192 | 5865 | 99.9 | Plus |
| CG32573-RC | 1332 | CG32573-RC | 46..1221 | 17..1192 | 5865 | 99.9 | Plus |
| CG32573-RA | 1782 | CG32573-RA | 496..1671 | 17..1192 | 5865 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16652079..16653164 | 107..1192 | 5415 | 99.9 | Plus |
| X | 23542271 | X | 16651927..16652016 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:14:00 has no hits.
BO06335.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:36 Download gff for
BO06335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-RA | 1..1179 | 17..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:57 Download gff for
BO06335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-RA | 489..1676 | 9..1198 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:14 Download gff for
BO06335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-RA | 496..1667 | 17..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:37 Download gff for
BO06335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-RA | 489..1676 | 9..1198 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:16 Download gff for
BO06335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32573-RA | 496..1667 | 17..1188 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:16 Download gff for
BO06335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16651927..16652016 | 17..106 | 100 | -> | Plus |
| X | 16652079..16653160 | 107..1188 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:14 Download gff for
BO06335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16545960..16546049 | 17..106 | 100 | -> | Plus |
| arm_X | 16546112..16547193 | 107..1188 | 99 | | Plus |
BO06335.pep Sequence
Translation from 16 to 1210
> BO06335.pep
MIQLLQLLLCTIPLVVGEVLPLQLDLDNSQITIRRSASRDDKLQVFHSIW
GAIRSDFATDTDKVKGLYSQLGGYIRDDVQCSSGSTGRSACELQQEVRRH
LRTLMAQRLANLLNAEESIQTYGMYIAASVEPALVRDILVHAIEDVYFHR
PLEKLVQQLEQLYADRDEVSFRTMIEAQLALFWRYQAMQDSSEAYLFNVA
HMVSKIRSHHMYASVDADLQKRVEALSQRLPPVLDLLFDPQGFCLLSRSD
REYIYTTITDEWNYGLNGRQMFSWREKNFTDTAGLTRAFVQEQHSTPLFT
LRSELFKWYYFVDPSQGNRLAALRSGSPSSSTSTWTIAYAGDALIFRQRE
LTLCAAEKFDDDRRLVKMLPGQMHTPPSEACQWLPIACAPPKASFLDH
BO06335.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32573-PC | 392 | CG32573-PC | 1..392 | 1..392 | 2033 | 100 | Plus |
| CG32573-PA | 392 | CG32573-PA | 1..392 | 1..392 | 2033 | 100 | Plus |
