Clone BO06336 Report

Search the DGRC for BO06336

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG9804-RA
Protein status:BO06336.pep: validated full length
Sequenced Size:736

Clone Sequence Records

BO06336.3prime Sequence

734 bp (713 high quality bases) assembled on 2005-12-03

> BO06336.3prime
ATGGTCTAGAAAGCTTGCTCCGATTTCAGCAGAACTTGCTGGTTTTTTGG
CGTGTTCCTGAAGGCGGCATTCGAAAACTTTAGCGAAACTATTGAGGAGT
GCGCCACTGGCCTCCTCGACAGGAAAATGTCTGTCCAGCTCTTTGCTGAG
CGAGGTGACCCCCTTGCCTTCGATTCCGCAGGGCACAATGTGCTCAAACC
ACTGCAGATCCGTGCAGCAATTGAGGCCGATTCCATGCGTGGTGACGTAA
CGCGAGCCGTGGATACCGATGGCACAGATCTTGTTGTCACCCACCCAGAT
ACCGGTGTCCTTGGTCGCCTTGGCACTGGAAATGCCCATCTGGTGGCAGG
CCTCGACAACCATCCGCTCCAACGTCGCCACGTACCAGCGGATGCTCGGC
ACGAACTGACCCAGGTGCAGAATGGGATAGGCCACCAACTGGCCGGGGCC
GTGAAATGTGATCAAGCCACCGCGATCTGTGCGATGGAAGTCTGCTCCTA
GCCGGCGGAGTCGGTCTTCATCCTGCGCCGTATAGTCCTTTGTCCTTAGT
CCGACTGTGTAGACCGGGTCGTGCTCCTGAAGCACCAGGTAGTTTCGGAA
CTCCGCTGGCGGATTCAGGATCTGGTTGGACCTTGCAAGACGTTGCTGTA
GCTGTAATCCTGCTGAATAGCTATGCCGCCCGGCCCGCACCACGGTCACC
AGCGGTCGGACAAAAGGCATGTCGACTGATAACT

BO06336.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9804-PA 705 CG9804-RA 1..702 720..19 3510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9804-RB 943 CG9804-RB 58..759 720..19 3510 100 Minus
CG9804-RA 1108 CG9804-RA 223..924 720..19 3510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4436406..4437107 19..720 3510 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:03:06 has no hits.

BO06336.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:41 Download gff for BO06336.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-PA 1..705 15..720 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:19 Download gff for BO06336.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-PA 1..705 15..720 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:37 Download gff for BO06336.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..927 15..720 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:49:55 Download gff for BO06336.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..927 15..720 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:49:55 Download gff for BO06336.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4436403..4437107 15..720 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:37 Download gff for BO06336.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 262125..262829 15..720 99   Plus

BO06336.5prime Sequence

734 bp (685 high quality bases) assembled on 2005-12-03

> BO06336.5prime
GAAGTTATCAGTCGACATGCCTTTTGTCCGACCGCTGGTGACCGTGGTGC
GGGCCGGGCGGCATAGCTATTCAGCAGGATTACAGCTACAGCAACGTCTT
GCAAGGTCCAACCAGATCCTGAATCCGCCAGCGGAGTTCCGAAACTACCT
GGTGCTTCAGGAGCACGACCCGGTCTACACAGTCGGACTAAGGACAAAGG
ACTATACGGCGCAGGATGAAGACCGACTCCGCCGGCTAGGAGCAGACTTC
CATCGCACAGATCGCGGTGGCTTGATCACATTTCACGGCCCCGGCCAGTT
GGTGGCCTATCCCATTCTGCACCTGGGTCAGTTCGTGCCGAGCATCCGCT
GGTACGTGGCGACGTTGGAGCGGATGGTTGTCGAGGCCTGCCACCAGATG
GGCATTTCCAGTGCCAAGGCGACCAAGGACACCGGTATCTGGGTGGGTGA
CAACAAGATCTGTGCCATCGGTATCCACGGCTCGCGTTACGTCACCACGC
ATGGAATCGGCCTCAATTGCTGCACGGATCTGCAGTGGTTTGAGCACATT
GTGCCCTGCGGAATCGAAGGCAAGGGGGTCACCTCGCTCAGCAAAGAGCT
GGACAGACATTTTCCTGTCGAGGAGGCCAGTGGCGCACTCCTCAATAGTT
TCGCTAAAGTTTTCGAATGCCGCCTTCAGGAACACGCCAAAAAACCAGCA
AGTTCTGCTGAAATCGGAGCAAGCTTTCTAGACC

BO06336.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9804-PA 705 CG9804-RA 1..702 17..718 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9804-RB 943 CG9804-RB 58..759 17..718 3510 100 Plus
CG9804-RA 1108 CG9804-RA 223..924 17..718 3510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4436406..4437107 718..17 3510 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:05:05 has no hits.

BO06336.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:42 Download gff for BO06336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-PA 1..705 17..722 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:20 Download gff for BO06336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-PA 1..705 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:40 Download gff for BO06336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..927 17..722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:50:31 Download gff for BO06336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..927 17..722 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:50:31 Download gff for BO06336.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4436403..4437107 17..722 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:40 Download gff for BO06336.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 262125..262829 17..722 99   Minus

BO06336.complete Sequence

736 bp (736 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630353

> BO06336.complete
GAAGTTATCAGTCGACATGCCTTTTGTCCGACCGCTGGTGACCGTGGTGC
GGGCCGGGCGGCATAGCTATTCAGCAGGATTACAGCTACAGCAACGTCTT
GCAAGGTCCAACCAGATCCTGAATCCGCCAGCGGAGTTCCGAAACTACCT
GGTGCTTCAGGAGCACGACCCGGTCTACACAGTCGGACTAAGGACAAAGG
ACTATACGGCGCAGGATGAAGACCGACTCCGCCGGCTAGGAGCAGACTTC
CATCGCACAGATCGCGGTGGCTTGATCACATTTCACGGCCCCGGCCAGTT
GGTGGCCTATCCCATTCTGCACCTGGGTCAGTTCGTGCCGAGCATCCGCT
GGTACGTGGCGACGTTGGAGCGGATGGTTGTCGAGGCCTGCCACCAGATG
GGCATTTCCAGTGCCAAGGCGACCAAGGACACCGGTATCTGGGTGGGTGA
CAACAAGATCTGTGCCATCGGTATCCACGGCTCGCGTTACGTCACCACGC
ATGGAATCGGCCTCAATTGCTGCACGGATCTGCAGTGGTTTGAGCACATT
GTGCCCTGCGGAATCGAAGGCAAGGGGGTCACCTCGCTCAGCAAAGAGCT
GGACAGACATTTTCCTGTCGAGGAGGCCAGTGGCGCACTCCTCAATAGTT
TCGCTAAAGTTTTCGAATGCCGCCTTCAGGAACACGCCAAAAAACCAGCA
AGTTCTGCTGAAATCGGAGCAAGCTTTCTAGACCAT

BO06336.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9804-RB 705 CG9804-PB 1..702 17..718 3510 100 Plus
CG9804-RA 705 CG9804-PA 1..702 17..718 3510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9804-RB 943 CG9804-RB 58..759 17..718 3510 100 Plus
CG9804-RA 1108 CG9804-RA 223..924 17..718 3510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4436406..4437107 718..17 3510 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:46:33 has no hits.

BO06336.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:44 Download gff for BO06336.complete
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 1..705 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:56 Download gff for BO06336.complete
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..927 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:34 Download gff for BO06336.complete
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..924 17..720 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:44 Download gff for BO06336.complete
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..927 17..722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:01 Download gff for BO06336.complete
Subject Subject Range Query Range Percent Splice Strand
CG9804-RA 223..924 17..720 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:01 Download gff for BO06336.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4436404..4437107 17..720 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:34 Download gff for BO06336.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 262126..262829 17..720 99   Minus

BO06336.pep Sequence

Translation from 16 to 736

> BO06336.pep
MPFVRPLVTVVRAGRHSYSAGLQLQQRLARSNQILNPPAEFRNYLVLQEH
DPVYTVGLRTKDYTAQDEDRLRRLGADFHRTDRGGLITFHGPGQLVAYPI
LHLGQFVPSIRWYVATLERMVVEACHQMGISSAKATKDTGIWVGDNKICA
IGIHGSRYVTTHGIGLNCCTDLQWFEHIVPCGIEGKGVTSLSKELDRHFP
VEEASGALLNSFAKVFECRLQEHAKKPASSAEIGASFLDH

BO06336.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9804-PB 234 CG9804-PB 1..234 1..234 1243 100 Plus
CG9804-PA 234 CG9804-PA 1..234 1..234 1243 100 Plus