Clone Sequence Records
BO06336.3prime Sequence
734 bp (713 high quality bases) assembled on 2005-12-03
> BO06336.3prime
ATGGTCTAGAAAGCTTGCTCCGATTTCAGCAGAACTTGCTGGTTTTTTGG
CGTGTTCCTGAAGGCGGCATTCGAAAACTTTAGCGAAACTATTGAGGAGT
GCGCCACTGGCCTCCTCGACAGGAAAATGTCTGTCCAGCTCTTTGCTGAG
CGAGGTGACCCCCTTGCCTTCGATTCCGCAGGGCACAATGTGCTCAAACC
ACTGCAGATCCGTGCAGCAATTGAGGCCGATTCCATGCGTGGTGACGTAA
CGCGAGCCGTGGATACCGATGGCACAGATCTTGTTGTCACCCACCCAGAT
ACCGGTGTCCTTGGTCGCCTTGGCACTGGAAATGCCCATCTGGTGGCAGG
CCTCGACAACCATCCGCTCCAACGTCGCCACGTACCAGCGGATGCTCGGC
ACGAACTGACCCAGGTGCAGAATGGGATAGGCCACCAACTGGCCGGGGCC
GTGAAATGTGATCAAGCCACCGCGATCTGTGCGATGGAAGTCTGCTCCTA
GCCGGCGGAGTCGGTCTTCATCCTGCGCCGTATAGTCCTTTGTCCTTAGT
CCGACTGTGTAGACCGGGTCGTGCTCCTGAAGCACCAGGTAGTTTCGGAA
CTCCGCTGGCGGATTCAGGATCTGGTTGGACCTTGCAAGACGTTGCTGTA
GCTGTAATCCTGCTGAATAGCTATGCCGCCCGGCCCGCACCACGGTCACC
AGCGGTCGGACAAAAGGCATGTCGACTGATAACT
BO06336.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9804-PA | 705 | CG9804-RA | 1..702 | 720..19 | 3510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9804-RB | 943 | CG9804-RB | 58..759 | 720..19 | 3510 | 100 | Minus |
CG9804-RA | 1108 | CG9804-RA | 223..924 | 720..19 | 3510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4436406..4437107 | 19..720 | 3510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:03:06 has no hits.
BO06336.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:41 Download gff for
BO06336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-PA | 1..705 | 15..720 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:19 Download gff for
BO06336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-PA | 1..705 | 15..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:37 Download gff for
BO06336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..927 | 15..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:49:55 Download gff for
BO06336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..927 | 15..720 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:49:55 Download gff for
BO06336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4436403..4437107 | 15..720 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:37 Download gff for
BO06336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 262125..262829 | 15..720 | 99 | | Plus |
BO06336.5prime Sequence
734 bp (685 high quality bases) assembled on 2005-12-03
> BO06336.5prime
GAAGTTATCAGTCGACATGCCTTTTGTCCGACCGCTGGTGACCGTGGTGC
GGGCCGGGCGGCATAGCTATTCAGCAGGATTACAGCTACAGCAACGTCTT
GCAAGGTCCAACCAGATCCTGAATCCGCCAGCGGAGTTCCGAAACTACCT
GGTGCTTCAGGAGCACGACCCGGTCTACACAGTCGGACTAAGGACAAAGG
ACTATACGGCGCAGGATGAAGACCGACTCCGCCGGCTAGGAGCAGACTTC
CATCGCACAGATCGCGGTGGCTTGATCACATTTCACGGCCCCGGCCAGTT
GGTGGCCTATCCCATTCTGCACCTGGGTCAGTTCGTGCCGAGCATCCGCT
GGTACGTGGCGACGTTGGAGCGGATGGTTGTCGAGGCCTGCCACCAGATG
GGCATTTCCAGTGCCAAGGCGACCAAGGACACCGGTATCTGGGTGGGTGA
CAACAAGATCTGTGCCATCGGTATCCACGGCTCGCGTTACGTCACCACGC
ATGGAATCGGCCTCAATTGCTGCACGGATCTGCAGTGGTTTGAGCACATT
GTGCCCTGCGGAATCGAAGGCAAGGGGGTCACCTCGCTCAGCAAAGAGCT
GGACAGACATTTTCCTGTCGAGGAGGCCAGTGGCGCACTCCTCAATAGTT
TCGCTAAAGTTTTCGAATGCCGCCTTCAGGAACACGCCAAAAAACCAGCA
AGTTCTGCTGAAATCGGAGCAAGCTTTCTAGACC
BO06336.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9804-PA | 705 | CG9804-RA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9804-RB | 943 | CG9804-RB | 58..759 | 17..718 | 3510 | 100 | Plus |
CG9804-RA | 1108 | CG9804-RA | 223..924 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4436406..4437107 | 718..17 | 3510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:05:05 has no hits.
BO06336.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:42 Download gff for
BO06336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-PA | 1..705 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:20 Download gff for
BO06336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-PA | 1..705 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:40 Download gff for
BO06336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..927 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:50:31 Download gff for
BO06336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..927 | 17..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:50:31 Download gff for
BO06336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4436403..4437107 | 17..722 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:40 Download gff for
BO06336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 262125..262829 | 17..722 | 99 | | Minus |
BO06336.complete Sequence
736 bp (736 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630353
> BO06336.complete
GAAGTTATCAGTCGACATGCCTTTTGTCCGACCGCTGGTGACCGTGGTGC
GGGCCGGGCGGCATAGCTATTCAGCAGGATTACAGCTACAGCAACGTCTT
GCAAGGTCCAACCAGATCCTGAATCCGCCAGCGGAGTTCCGAAACTACCT
GGTGCTTCAGGAGCACGACCCGGTCTACACAGTCGGACTAAGGACAAAGG
ACTATACGGCGCAGGATGAAGACCGACTCCGCCGGCTAGGAGCAGACTTC
CATCGCACAGATCGCGGTGGCTTGATCACATTTCACGGCCCCGGCCAGTT
GGTGGCCTATCCCATTCTGCACCTGGGTCAGTTCGTGCCGAGCATCCGCT
GGTACGTGGCGACGTTGGAGCGGATGGTTGTCGAGGCCTGCCACCAGATG
GGCATTTCCAGTGCCAAGGCGACCAAGGACACCGGTATCTGGGTGGGTGA
CAACAAGATCTGTGCCATCGGTATCCACGGCTCGCGTTACGTCACCACGC
ATGGAATCGGCCTCAATTGCTGCACGGATCTGCAGTGGTTTGAGCACATT
GTGCCCTGCGGAATCGAAGGCAAGGGGGTCACCTCGCTCAGCAAAGAGCT
GGACAGACATTTTCCTGTCGAGGAGGCCAGTGGCGCACTCCTCAATAGTT
TCGCTAAAGTTTTCGAATGCCGCCTTCAGGAACACGCCAAAAAACCAGCA
AGTTCTGCTGAAATCGGAGCAAGCTTTCTAGACCAT
BO06336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9804-RB | 705 | CG9804-PB | 1..702 | 17..718 | 3510 | 100 | Plus |
CG9804-RA | 705 | CG9804-PA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9804-RB | 943 | CG9804-RB | 58..759 | 17..718 | 3510 | 100 | Plus |
CG9804-RA | 1108 | CG9804-RA | 223..924 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4436406..4437107 | 718..17 | 3510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:46:33 has no hits.
BO06336.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:44 Download gff for
BO06336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 1..705 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:56 Download gff for
BO06336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..927 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:34 Download gff for
BO06336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..924 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:44 Download gff for
BO06336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..927 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:01 Download gff for
BO06336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9804-RA | 223..924 | 17..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:01 Download gff for
BO06336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4436404..4437107 | 17..720 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:34 Download gff for
BO06336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 262126..262829 | 17..720 | 99 | | Minus |
BO06336.pep Sequence
Translation from 16 to 736
> BO06336.pep
MPFVRPLVTVVRAGRHSYSAGLQLQQRLARSNQILNPPAEFRNYLVLQEH
DPVYTVGLRTKDYTAQDEDRLRRLGADFHRTDRGGLITFHGPGQLVAYPI
LHLGQFVPSIRWYVATLERMVVEACHQMGISSAKATKDTGIWVGDNKICA
IGIHGSRYVTTHGIGLNCCTDLQWFEHIVPCGIEGKGVTSLSKELDRHFP
VEEASGALLNSFAKVFECRLQEHAKKPASSAEIGASFLDH
BO06336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9804-PB | 234 | CG9804-PB | 1..234 | 1..234 | 1243 | 100 | Plus |
CG9804-PA | 234 | CG9804-PA | 1..234 | 1..234 | 1243 | 100 | Plus |