Clone BO06337 Report

Search the DGRC for BO06337

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG18004-RC
Protein status:BO06337.pep: validated full length
Sequenced Size:628

Clone Sequence Records

BO06337.5prime Sequence

626 bp (625 high quality bases) assembled on 2005-12-03

> BO06337.5prime
GAAGTTATCAGTCGACATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGA
ACGAGTACTTCCAGGATCTATTGCACACCAACCAGCGGCGTCTGCTGAAA
GTTTCCCGGGATCGTACCTTCCTGCTGGACCGTCTGCTGGTGTACGAGAA
GCCGGCCAAGGACTCTAGCGACTCGGATGCCACCGACAGCTCCGATTCGG
AGCCAGCTTCTACGTCCGGCGTTGCCGGCGGATCGCAAACATCCAAGGAC
GCCATTCGGCGCAAGCACAAAGACAAGGGGGCACCAGGAATTCCAGGTGT
GCCTCCGCACATGCCCACAGTGGGCGCCCCACGAGGTCGAAGACGAAAAA
TCCTAACCGGAATGTTGCCCGCGAACCATGGAATCCCAGCAATTGCTGCG
AAAAAACAACTTACCGCCACGGTGTCACCTTCGCAGCAGCCACCGCAACT
ACAGACTGCTCCGAAGGATGTGTCGCCCGGCCTCAGCCAAGCGGAGATTG
CCCGCCAGCTGCAGGAGCGACGACCGACGCCGTTGGAGCTATTGAGTCCG
GAATGCACTTCGGCCACCGTGCCCACAACGATGCTCAGCGATGAAAGCCC
CTCTAAGTGGGCAAGCTTTCTAGACC

BO06337.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-PC 597 CG18004-RC 1..594 17..610 2970 100 Plus
CG18004-PB 876 CG18004-RB 217..779 47..609 2815 100 Plus
CG18004-PA 894 CG18004-RA 235..797 47..609 2815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-RA 1044 CG18004-RA 317..879 47..609 2815 100 Plus
CG18004-RB 1168 CG18004-RB 441..1003 47..609 2815 100 Plus
CG18004-RD 1026 CG18004-RD 317..861 65..609 2725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10885560..10886153 17..610 2970 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:08:07 has no hits.

BO06337.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:45 Download gff for BO06337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18004-PC 1..597 17..614 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:24 Download gff for BO06337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18004-PC 1..597 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:39 Download gff for BO06337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 441..1003 47..609 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:45 Download gff for BO06337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 441..1003 47..609 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:45 Download gff for BO06337.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10885560..10886156 17..614 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:39 Download gff for BO06337.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6773065..6773661 17..614 99   Plus

BO06337.3prime Sequence

626 bp (625 high quality bases) assembled on 2005-12-03

> BO06337.3prime
ATGGTCTAGAAAGCTTGCCCACTTAGAGGGGCTTTCATCGCTGAGCATCG
TTGTGGGCACGGTGGCCGAAGTGCATTCCGGACTCAATAGCTCCAACGGC
GTCGGTCGTCGCTCCTGCAGCTGGCGGGCAATCTCCGCTTGGCTGAGGCC
GGGCGACACATCCTTCGGAGCAGTCTGTAGTTGCGGTGGCTGCTGCGAAG
GTGACACCGTGGCGGTAAGTTGTTTTTTCGCAGCAATTGCTGGGATTCCA
TGGTTCGCGGGCAACATTCCGGTTAGGATTTTTCGTCTTCGACCTCGTGG
GGCGCCCACTGTGGGCATGTGCGGAGGCACACCTGGAATTCCTGGTGCCC
CCTTGTCTTTGTGCTTGCGCCGAATGGCGTCCTTGGATGTTTGCGATCCG
CCGGCAACGCCGGACGTAGAAGCTGGCTCCGAATCGGAGCTGTCGGTGGC
ATCCGAGTCGCTAGAGTCCTTGGCCGGCTTCTCGTACACCAGCAGACGGT
CCAGCAGGAAGGTACGATCCCGGGAAACTTTCAGCAGACGCCGCTGGTTG
GTGTGCAATAGATCCTGGAAGTACTCGTTCTCCTGTAAACACAAAAAGCT
GTGACTTGCCATGTCGACTGATAACT

BO06337.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-PC 597 CG18004-RC 1..594 612..19 2970 100 Minus
CG18004-PB 876 CG18004-RB 217..779 582..20 2815 100 Minus
CG18004-PA 894 CG18004-RA 235..797 582..20 2815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-RA 1044 CG18004-RA 317..879 582..20 2815 100 Minus
CG18004-RB 1168 CG18004-RB 441..1003 582..20 2815 100 Minus
CG18004-RD 1026 CG18004-RD 317..861 564..20 2725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10885560..10886153 612..19 2970 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:06:56 has no hits.

BO06337.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:43 Download gff for BO06337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18004-PC 1..597 15..612 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:22 Download gff for BO06337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18004-PC 1..597 15..612 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:04 Download gff for BO06337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 441..1003 20..582 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:26:00 Download gff for BO06337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 441..1003 20..582 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:26:00 Download gff for BO06337.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10885560..10886156 15..612 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:04 Download gff for BO06337.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6773065..6773661 15..612 99   Minus

BO06337.complete Sequence

628 bp (628 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630354

> BO06337.complete
GAAGTTATCAGTCGACATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGA
ACGAGTACTTCCAGGATCTATTGCACACCAACCAGCGGCGTCTGCTGAAA
GTTTCCCGGGATCGTACCTTCCTGCTGGACCGTCTGCTGGTGTACGAGAA
GCCGGCCAAGGACTCTAGCGACTCGGATGCCACCGACAGCTCCGATTCGG
AGCCAGCTTCTACGTCCGGCGTTGCCGGCGGATCGCAAACATCCAAGGAC
GCCATTCGGCGCAAGCACAAAGACAAGGGGGCACCAGGAATTCCAGGTGT
GCCTCCGCACATGCCCACAGTGGGCGCCCCACGAGGTCGAAGACGAAAAA
TCCTAACCGGAATGTTGCCCGCGAACCATGGAATCCCAGCAATTGCTGCG
AAAAAACAACTTACCGCCACGGTGTCACCTTCGCAGCAGCCACCGCAACT
ACAGACTGCTCCGAAGGATGTGTCGCCCGGCCTCAGCCAAGCGGAGATTG
CCCGCCAGCTGCAGGAGCGACGACCGACGCCGTTGGAGCTATTGAGTCCG
GAATGCACTTCGGCCACCGTGCCCACAACGATGCTCAGCGATGAAAGCCC
CTCTAAGTGGGCAAGCTTTCTAGACCAT

BO06337.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-RA 894 CG18004-PA 235..797 47..609 2815 100 Plus
CG18004-RB 876 CG18004-PB 217..779 47..609 2815 100 Plus
CG18004-RD 876 CG18004-PD 235..779 65..609 2725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-RA 1044 CG18004-RA 317..879 47..609 2815 100 Plus
CG18004-RB 1168 CG18004-RB 441..1003 47..609 2815 100 Plus
CG18004-RD 1026 CG18004-RD 317..861 65..609 2725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10885560..10886153 17..610 2970 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:18:41 has no hits.

BO06337.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:38 Download gff for BO06337.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RC 1..597 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:59 Download gff for BO06337.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RC 237..833 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:53 Download gff for BO06337.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 441..1003 47..612 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:38 Download gff for BO06337.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RC 237..833 17..614 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:34 Download gff for BO06337.complete
Subject Subject Range Query Range Percent Splice Strand
CG18004-RB 441..1003 47..612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:34 Download gff for BO06337.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10885560..10886153 17..612 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:53 Download gff for BO06337.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6773065..6773658 17..612 99   Plus

BO06337.pep Sequence

Translation from 16 to 628

> BO06337.pep
MASHSFLCLQENEYFQDLLHTNQRRLLKVSRDRTFLLDRLLVYEKPAKDS
SDSDATDSSDSEPASTSGVAGGSQTSKDAIRRKHKDKGAPGIPGVPPHMP
TVGAPRGRRRKILTGMLPANHGIPAIAAKKQLTATVSPSQQPPQLQTAPK
DVSPGLSQAEIARQLQERRPTPLELLSPECTSATVPTTMLSDESPSKWAS
FLDH

BO06337.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18004-PB 291 CG18004-PB 71..259 9..197 956 98.9 Plus
CG18004-PA 297 CG18004-PA 77..265 9..197 956 98.9 Plus
CG18004-PD 291 CG18004-PD 79..259 17..197 921 100 Plus