Clone Sequence Records
BO06338.3prime Sequence
823 bp (747 high quality bases) assembled on 2005-12-03
> BO06338.3prime
ATGGTCTAGAAAGCTTGCCTTTTTTGAGTCTGACTGAGGGGTCTGACTCT
TGCGCCGCTGCGAGGCTTGATAGGCACTATTATAGAAGTCGTAAAAGCCG
TAGAACATGCCAAGAATGACGGTGGTGAAGTAGAGAAGCACTAAGGGCGG
CATGCCGCACAATACCAGCTGGAAAGCAACCTGCGTGAGGATAAGAACGA
ACTGCGTCATCTGAATCACTGTGATGCACTTCTTCACTGGAGTTAGGGCC
TGCACCAAGGTCTTATCCGCCACTGCCGCCACAAAGTAGTACGAGTACAT
GATAACGTGAACGATAGAATTCAAGAACACGCAGAAGTAAGCAGCAGAAC
CATTTTCGTTGAAGTTGATCAGTGCGTAGACCAGCGTTACCGTGGAGAAG
TGATGAAAGATGTGCAGCTTGGACACCTGGTTTTGTTTCTTGCGAAGCAC
AAAGATCACGGTTTCAATCAGCTCAGAGATCTTCAGCCAGAAGAGAAAGT
AGGCCAAGTTGTAGTACCGCCTCACGAGCTCTGGGCTGCTCCCGATGTCG
CGGCACTTCCAAAAGATGTATATGGTGTTGTCCGTAATGTACAGGACCTC
TTTGATAGCATATATGCAGGAAACCACCTGGATGAAATTATGTAGCAAGA
TAAGTCGCTTGAGCTCGTAAGGTTTGCGCCATTCCATGAAATGCGGACCC
GCTTTGGTGACGAAGTACAGATAGAGGACCAGCACTGTGATCATGTACCA
GGGATCCTTATAAATCGTAAGAACGTTCACCACCGGCTGCAAATTTATAC
TTGCTGACGCCTCCATGTCGACT
BO06338.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30008-PA | 801 | CG30008-RA | 1..798 | 816..19 | 3965 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30008-RA | 965 | CG30008-RA | 99..900 | 820..19 | 3980 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9890744..9891076 | 351..19 | 1665 | 100 | Minus |
2R | 25286936 | 2R | 9890438..9890688 | 599..349 | 1255 | 100 | Minus |
2R | 25286936 | 2R | 9890052..9890160 | 800..692 | 530 | 99.1 | Minus |
2R | 25286936 | 2R | 9890287..9890382 | 691..596 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:05:33 has no hits.
BO06338.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:45 Download gff for
BO06338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-PA | 1..801 | 15..816 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:25 Download gff for
BO06338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-PA | 1..801 | 15..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:42 Download gff for
BO06338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 97..909 | 8..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:13 Download gff for
BO06338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 97..909 | 8..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:13 Download gff for
BO06338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9889974..9889995 | 801..823 | 91 | -> | Minus |
2R | 9890052..9890160 | 692..800 | 99 | -> | Minus |
2R | 9890287..9890380 | 598..691 | 100 | -> | Minus |
2R | 9890440..9890686 | 351..597 | 100 | -> | Minus |
2R | 9890745..9891085 | 8..350 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:42 Download gff for
BO06338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5777479..5777500 | 801..823 | 91 | -> | Minus |
arm_2R | 5777792..5777885 | 598..691 | 100 | -> | Minus |
arm_2R | 5777557..5777665 | 692..800 | 99 | -> | Minus |
arm_2R | 5777945..5778191 | 351..597 | 100 | -> | Minus |
arm_2R | 5778250..5778590 | 8..350 | 98 | | Minus |
BO06338.5prime Sequence
831 bp (749 high quality bases) assembled on 2005-12-03
> BO06338.5prime
GAAGTTATCAGTCGACATGGAGGCGTCAGCAAGTATAAATTTGCAGCCGG
TGGTGAACGTTCCTACGATTTATAAGGATCCCTGGTACATGATCACAGTG
CTGGTCCTCTATCTGTACTTCGTCACCAAAGCGGGTCCGCATTTCATGGA
ATGGCGCAAACCTTACGAGCTCAAGCGACTTATCTTGCTACATAATTTCA
TCCAGGTGGTTTCCTGCATATATGCTATCAAAGAGGTCCTGTACATTACG
GACAACACCATATACATCTTTTGGAAGTGCCGCGACATCGGGAGCAGCCC
AGAGCTCGTGAGGCGGTACTACAACTTGGCCTACTTTCTCTTCTGGCTGA
AGATCTCTGAGCTGATTGAAACCGTGATCTTTGTGCTTCGCAAGAAACAA
AACCAGGTGTCCAAGCTGCACATCTTTCATCACTTCTCCACGGTAACGCT
GGTCTACGCACTGATCAACTTCAACGAAAATGGTTCTGCTGCTTACTTCT
GCGTGTTCTTGAATTCTATCGTTCACGTTATCATGTACTCGTACTACTTT
GTGGCGGCAGTGGCGGATAAGACCTTGGTGCAGGCCCTAACTCCAGTGAA
GAAGTGCATCACAGTGATTCAGATGACGCAGTTCGTTCTTATCCTCACGC
AGGTTGCTTTCCAGCTGGTATTGTGCGGCATGCCGCCCTTAGTGCTTCTC
TACTTCACCACCGTCATTCTTGGCATGTTCTACGGCTTTTACGACTTCTA
TAATAGTGCCTATCAAGCCTCGCAGCGGCGCAAGAGTCAGACCCCTCAGT
CAGACTCAAAAAAGGCAAGCTTTCTAGACCA
BO06338.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30008-PA | 801 | CG30008-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30008-RA | 965 | CG30008-RA | 99..900 | 13..814 | 3995 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9890744..9891076 | 482..814 | 1665 | 100 | Plus |
2R | 25286936 | 2R | 9890438..9890688 | 234..484 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 9890052..9890160 | 33..141 | 545 | 100 | Plus |
2R | 25286936 | 2R | 9890287..9890382 | 142..237 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:05:44 has no hits.
BO06338.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:46 Download gff for
BO06338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-PA | 1..801 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:27 Download gff for
BO06338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-PA | 1..801 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:52 Download gff for
BO06338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 97..909 | 10..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:57:31 Download gff for
BO06338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 97..909 | 10..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:57:31 Download gff for
BO06338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9889974..9889995 | 10..32 | 91 | -> | Plus |
2R | 9890052..9890160 | 33..141 | 100 | -> | Plus |
2R | 9890287..9890380 | 142..235 | 100 | -> | Plus |
2R | 9890440..9890686 | 236..482 | 100 | -> | Plus |
2R | 9890745..9891085 | 483..825 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:52 Download gff for
BO06338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5777479..5777500 | 10..32 | 91 | -> | Plus |
arm_2R | 5777557..5777665 | 33..141 | 100 | -> | Plus |
arm_2R | 5777792..5777885 | 142..235 | 100 | -> | Plus |
arm_2R | 5777945..5778191 | 236..482 | 100 | -> | Plus |
arm_2R | 5778250..5778590 | 483..825 | 98 | | Plus |
BO06338.complete Sequence
832 bp (832 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630355
> BO06338.complete
GAAGTTATCAGTCGACATGGAGGCGTCAGCAAGTATAAATTTGCAGCCGG
TGGTGAACGTTCCTACGATTTATAAGGATCCCTGGTACATGATCACAGTG
CTGGTCCTCTATCTGTACTTCGTCACCAAAGCGGGTCCGCATTTCATGGA
ATGGCGCAAACCTTACGAGCTCAAGCGACTTATCTTGCTACATAATTTCA
TCCAGGTGGTTTCCTGCATATATGCTATCAAAGAGGTCCTGTACATTACG
GACAACACCATATACATCTTTTGGAAGTGCCGCGACATCGGGAGCAGCCC
AGAGCTCGTGAGGCGGTACTACAACTTGGCCTACTTTCTCTTCTGGCTGA
AGATCTCTGAGCTGATTGAAACCGTGATCTTTGTGCTTCGCAAGAAACAA
AACCAGGTGTCCAAGCTGCACATCTTTCATCACTTCTCCACGGTAACGCT
GGTCTACGCACTGATCAACTTCAACGAAAATGGTTCTGCTGCTTACTTCT
GCGTGTTCTTGAATTCTATCGTTCACGTTATCATGTACTCGTACTACTTT
GTGGCGGCAGTGGCGGATAAGACCTTGGTGCAGGCCCTAACTCCAGTGAA
GAAGTGCATCACAGTGATTCAGATGACGCAGTTCGTTCTTATCCTCACGC
AGGTTGCTTTCCAGCTGGTATTGTGCGGCATGCCGCCCTTAGTGCTTCTC
TACTTCACCACCGTCATTCTTGGCATGTTCTACGGCTTTTACGACTTCTA
TAATAGTGCCTATCAAGCCTCGCAGCGGCGCAAGAGTCAGACCCCTCAGT
CAGACTCAAAAAAGGCAAGCTTTCTAGACCAT
BO06338.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30008-RA | 801 | CG30008-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30008-RA | 965 | CG30008-RA | 99..900 | 13..814 | 3995 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9890744..9891076 | 482..814 | 1665 | 100 | Plus |
2R | 25286936 | 2R | 9890438..9890688 | 234..484 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 9890052..9890160 | 33..141 | 545 | 100 | Plus |
2R | 25286936 | 2R | 9890287..9890382 | 142..237 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:49:18 has no hits.
BO06338.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:21 Download gff for
BO06338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 1..801 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:35 Download gff for
BO06338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 77..889 | 10..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:59 Download gff for
BO06338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 103..900 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:21 Download gff for
BO06338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 77..889 | 10..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:02 Download gff for
BO06338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30008-RA | 103..900 | 17..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:02 Download gff for
BO06338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9890287..9890380 | 142..235 | 100 | -> | Plus |
2R | 9890440..9890686 | 236..482 | 100 | -> | Plus |
2R | 9889980..9889995 | 17..32 | 100 | -> | Plus |
2R | 9890052..9890160 | 33..141 | 100 | -> | Plus |
2R | 9890745..9891076 | 483..816 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:59 Download gff for
BO06338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5777485..5777500 | 17..32 | 100 | -> | Plus |
arm_2R | 5777557..5777665 | 33..141 | 100 | -> | Plus |
arm_2R | 5777792..5777885 | 142..235 | 100 | -> | Plus |
arm_2R | 5777945..5778191 | 236..482 | 100 | -> | Plus |
arm_2R | 5778250..5778581 | 483..816 | 99 | | Plus |
BO06338.pep Sequence
Translation from 16 to 832
> BO06338.pep
MEASASINLQPVVNVPTIYKDPWYMITVLVLYLYFVTKAGPHFMEWRKPY
ELKRLILLHNFIQVVSCIYAIKEVLYITDNTIYIFWKCRDIGSSPELVRR
YYNLAYFLFWLKISELIETVIFVLRKKQNQVSKLHIFHHFSTVTLVYALI
NFNENGSAAYFCVFLNSIVHVIMYSYYFVAAVADKTLVQALTPVKKCITV
IQMTQFVLILTQVAFQLVLCGMPPLVLLYFTTVILGMFYGFYDFYNSAYQ
ASQRRKSQTPQSDSKKASFLDH
BO06338.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30008-PA | 266 | CG30008-PA | 1..266 | 1..266 | 1386 | 100 | Plus |
bond-PC | 322 | CG6921-PC | 28..261 | 18..253 | 343 | 35.4 | Plus |
bond-PA | 322 | CG6921-PA | 28..261 | 18..253 | 343 | 35.4 | Plus |
bond-PB | 322 | CG6921-PB | 28..261 | 18..253 | 343 | 35.4 | Plus |
CG8534-PA | 265 | CG8534-PA | 16..261 | 13..257 | 336 | 34.7 | Plus |