Clone Sequence Records
BO06340.3prime Sequence
551 bp (550 high quality bases) assembled on 2005-12-03
> BO06340.3prime
ATGGTCTAGAAAGCTTGCATTCTTCTCTGGAATGTAGTCCACCTCATTGG
CATGATCCTCCAGCCAGTCCAAGTGAACTGGCGGCGCAGAAGTGGTTAGT
TCCTCCTTAAGATCGTTTTTGGAGGAACTCGAAGCCTCCGATGTGGAAGG
GGTGGTCGTGGTGGTGACCTCCTCCGGTTCCTTCTGCTCATCCTTATCCT
TTTCCTTATCCTTTTCGAATTTAACCGGTGAGGCGAGCACATTGACCAGT
TTATTTATGCGCTGGAAGAGCGATATGGTGGCATCCCTGGCCTTCTCCTC
CAAGATCTTGGCCTCCTTCTCGATATTGGCTATCCAGGGCTTGGCCTTCT
CCAGAGTGCATTGCAGGCTGTGGACGAATTTGTTGACCTCACTGGTACTG
GGAGTGGTCACCGAATCACCATCCTCTGCAGACTTAGCCTCCGATCCGCA
GACAATGGAGGCTGCCTGCATTTGACCACAACTGGCAAAGAGGCACAGGC
TGGCCAAAAAGACGGCGATGGTCAATGAATTAGTCATGTCGACTGATAAC
T
BO06340.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9689-PA | 522 | CG9689-RA | 1..519 | 537..19 | 2595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9689-RB | 688 | CG9689-RB | 76..594 | 537..19 | 2595 | 100 | Minus |
| CG9689-RA | 1655 | CG9689-RA | 76..594 | 537..19 | 2595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9882028..9882546 | 537..19 | 2595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:05:53 has no hits.
BO06340.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:49 Download gff for
BO06340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-PA | 1..522 | 18..537 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:31 Download gff for
BO06340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-PA | 1..522 | 18..537 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:44 Download gff for
BO06340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 74..594 | 19..541 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:48 Download gff for
BO06340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 74..594 | 19..541 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:48 Download gff for
BO06340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9882026..9882546 | 19..541 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:44 Download gff for
BO06340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9776059..9776579 | 19..541 | 99 | | Minus |
BO06340.5prime Sequence
551 bp (550 high quality bases) assembled on 2005-12-03
> BO06340.5prime
GAAGTTATCAGTCGACATGACTAATTCATTGACCATCGCCGTCTTTTTGG
CCAGCCTGTGCCTCTTTGCCAGTTGTGGTCAAATGCAGGCAGCCTCCATT
GTCTGCGGATCGGAGGCTAAGTCTGCAGAGGATGGTGATTCGGTGACCAC
TCCCAGTACCAGTGAGGTCAACAAATTCGTCCACAGCCTGCAATGCACTC
TGGAGAAGGCCAAGCCCTGGATAGCCAATATCGAGAAGGAGGCCAAGATC
TTGGAGGAGAAGGCCAGGGATGCCACCATATCGCTCTTCCAGCGCATAAA
TAAACTGGTCAATGTGCTCGCCTCACCGGTTAAATTCGAAAAGGATAAGG
AAAAGGATAAGGATGAGCAGAAGGAACCGGAGGAGGTCACCACCACGACC
ACCCCTTCCACATCGGAGGCTTCGAGTTCCTCCAAAAACGATCTTAAGGA
GGAACTAACCACTTCTGCGCCGCCAGTTCACTTGGACTGGCTGGAGGATC
ATGCCAATGAGGTGGACTACATTCCAGAGAAGAATGCAAGCTTTCTAGAC
C
BO06340.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9689-PA | 522 | CG9689-RA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9689-RB | 688 | CG9689-RB | 76..594 | 17..535 | 2595 | 100 | Plus |
| CG9689-RA | 1655 | CG9689-RA | 76..594 | 17..535 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:55:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9882028..9882546 | 17..535 | 2595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:55:33 has no hits.
BO06340.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:50 Download gff for
BO06340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-PA | 1..522 | 17..536 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:32 Download gff for
BO06340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-PA | 1..522 | 17..536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:40 Download gff for
BO06340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 74..594 | 13..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:13 Download gff for
BO06340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 74..594 | 13..535 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:13 Download gff for
BO06340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9882026..9882546 | 13..535 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:40 Download gff for
BO06340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9776059..9776579 | 13..535 | 99 | | Plus |
BO06340.complete Sequence
553 bp (553 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630356
> BO06340.complete
GAAGTTATCAGTCGACATGACTAATTCATTGACCATCGCCGTCTTTTTGG
CCAGCCTGTGCCTCTTTGCCAGTTGTGGTCAAATGCAGGCAGCCTCCATT
GTCTGCGGATCGGAGGCTAAGTCTGCAGAGGATGGTGATTCGGTGACCAC
TCCCAGTACCAGTGAGGTCAACAAATTCGTCCACAGCCTGCAATGCACTC
TGGAGAAGGCCAAGCCCTGGATAGCCAATATCGAGAAGGAGGCCAAGATC
TTGGAGGAGAAGGCCAGGGATGCCACCATATCGCTCTTCCAGCGCATAAA
TAAACTGGTCAATGTGCTCGCCTCACCGGTTAAATTCGAAAAGGATAAGG
AAAAGGATAAGGATGAGCAGAAGGAACCGGAGGAGGTCACCACCACGACC
ACCCCTTCCACATCGGAGGCTTCGAGTTCCTCCAAAAACGATCTTAAGGA
GGAACTAACCACTTCTGCGCCGCCAGTTCACTTGGACTGGCTGGAGGATC
ATGCCAATGAGGTGGACTACATTCCAGAGAAGAATGCAAGCTTTCTAGAC
CAT
BO06340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9689-RB | 522 | CG9689-PB | 1..519 | 17..535 | 2595 | 100 | Plus |
| CG9689-RA | 522 | CG9689-PA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9689-RB | 688 | CG9689-RB | 76..594 | 17..535 | 2595 | 100 | Plus |
| CG9689-RA | 1655 | CG9689-RA | 76..594 | 17..535 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9882028..9882546 | 17..535 | 2595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:02:54 has no hits.
BO06340.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:24 Download gff for
BO06340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 1..522 | 17..536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:58 Download gff for
BO06340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 44..564 | 13..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:23 Download gff for
BO06340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 76..594 | 17..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:24 Download gff for
BO06340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 44..564 | 13..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:06 Download gff for
BO06340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9689-RA | 76..594 | 17..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:06 Download gff for
BO06340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9882028..9882546 | 17..537 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:23 Download gff for
BO06340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9776061..9776579 | 17..537 | 99 | | Plus |
BO06340.pep Sequence
Translation from 16 to 553
> BO06340.pep
MTNSLTIAVFLASLCLFASCGQMQAASIVCGSEAKSAEDGDSVTTPSTSE
VNKFVHSLQCTLEKAKPWIANIEKEAKILEEKARDATISLFQRINKLVNV
LASPVKFEKDKEKDKDEQKEPEEVTTTTTPSTSEASSSSKNDLKEELTTS
APPVHLDWLEDHANEVDYIPEKNASFLDH
BO06340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9689-PB | 173 | CG9689-PB | 1..173 | 1..173 | 878 | 100 | Plus |
| CG9689-PA | 173 | CG9689-PA | 1..173 | 1..173 | 878 | 100 | Plus |
