Clone BO06341 Report

Search the DGRC for BO06341

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG32488-RA
Protein status:BO06341.pep: validated full length
Sequenced Size:955

Clone Sequence Records

BO06341.3prime Sequence

909 bp (821 high quality bases) assembled on 2005-12-03

> BO06341.3prime
ATGGTCTAGAAAGCTTGCGCAGAGGAACTCCAGCATGTGGCCGAGGCTGG
GAAGGTAGGTATCTGGCACCAGGATCTTCTTCTTGGGGTCACCCTCCTCG
ATGATCTGCTGCACTTCCTTCGGGGTGTTCACACCACTGCCGACCATCAG
GGATTGGAAACCACAGTTGGAAGCGAAGTGCATATCCGTCTGCAGTGTAT
CGCCCACCATTAGTGTGGTTTCCGGCTTTATGGCCCCGGACTGCATGAGT
GTAGACGCCATCCAGGGATTGGGTTTTCCCAGCACCAGCGGCGACCTTCC
GGTATAGGCTTTCATGGCCGCCAAGGTGGCACCGGCGCCCACCATCACCC
GGTTATTTCCGATGGGATAGGCGGCATCTAAACAGGTGCCGAGAAAAATG
ACATCGGGATTCAGCAGATAGCTGCCGGTTCGAACCAGCTTGGCCATGTT
GAAACCCTCATCCCGGCCCACAATTACTGCTCCCACATCGGGATCCAGTT
CCAACTCAGTGACGAACTCGTGCATGGGCTTCTCCAGCTTTTCGGACATT
TTCAGGGAGCAGATGCCAAATTTTTCCAGCTCAAAATGAACTCCTTTCTC
GCCCATGACGAAAACCTTCTTCTGAAAGTTTTTGACAGCCAGGAAATTGG
CACACGAAAAGGACGAAGTCAGTACATTATCCTCCTTGATCTCTATGCCA
AAACCTTTCGCCTTATCGGCCATCTCCTGCCTTGAAATCTCGGAATTGTT
AGAGATTATGAAAATCTTTCGGCCGGTGGTGTTCATGTAATTGAAAGTAT
CCACAGCTCCGTCAATTGCCTTCGAGAAGTGCCAAAGGACTCCATCGGCA
TCAAGGATCACGGATTCGAATGTGGATAGCCATTGGCGAACCCCGTTTGT
TCGCCACTT

BO06341.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG32488-PA 924 CG32488-RA 47..921 893..19 4375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG32488-RB 1245 CG32488-RB 68..942 893..19 4375 100 Minus
CG32488-RA 1040 CG32488-RA 68..942 893..19 4375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3015306..3016002 197..893 3485 100 Plus
3L 28110227 3L 3015064..3015241 19..196 890 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:56:09 has no hits.

BO06341.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:51 Download gff for BO06341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32488-PA 31..924 18..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:34 Download gff for BO06341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32488-PA 31..924 18..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:05 Download gff for BO06341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32488-RA 52..942 19..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:36:37 Download gff for BO06341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32488-RA 52..942 19..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:36:37 Download gff for BO06341.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3015064..3015241 19..196 100 <- Plus
3L 3015306..3016018 197..909 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:05 Download gff for BO06341.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3015064..3015241 19..196 100 <- Plus
arm_3L 3015306..3016018 197..909 99   Plus

BO06341.5prime Sequence

854 bp (731 high quality bases) assembled on 2005-12-03

> BO06341.5prime
GAAGTTATCAGTCGACATGTTCAAGCATACTTTCACAGATTTGACCAAGT
TGCCGAAACAACGGGTTCGCCAATGGCTATCCACATTCGAATCCGTGATC
CTTGATGCCGATGGAGTCCTTTGGCACTTCTCGAAGGCAATTGACGGAGC
TGTGGATACTTTCAATTACATGAACACCACCGGCCGAAAGATTTTCATAA
TCTCTAACAATTCCGAGATTTCAAGGCAGGAGATGGCCGATAAGGCGAAA
GGTTTTGGCATAGAGATCAAGGAGGATAATGTACTGACTTCGTCCTTTTC
GTGTGCCAATTTCCTGGCTGTCAAAAACTTTCAGAAGAAGGTTTTCGTCA
TGGGCGAGAAAGGAGTTCATTTTGAGCTGGAAAAATTTGGCATCTGCTCC
CTGAAAATGTCCGAAAAGCTGGAGAAGCCCATGCACGAGTTCGTCACTGA
GTTGGAACTGGATCCCGATGTGGGAGCAGTAATTGTGGGCCGGGATGAGG
GTTTCAACATGGCCAAGCTGGTTCGAACCGGCAGCTATCTGCTGAATCCC
GATGTCATTTTTCTCGGCACCTGTTTAGATGCCGCCTATCCCATCGGAAA
TAACCGGGTGATGGTGGGCGCCGGTGCCACCTTGGCGGCCATGAAAGCCT
ATACCGGAAGGTCGCCGCTGGTGCTGGGAAAACCCAATCCCTGGATGGCG
TCTACACTCATGCAGTCCGGGGCCATAAAGCCGGAAACCACACTAATGGT
GGGCGATACACTGCAGACGGATATGCACTTCGCTTCCAACTGTGGTTTCC
AATCCTGATGGTCGGCAGTGGTGTGAACACCCCGAAGAAGTGCAGCAGAT
CATC

BO06341.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG32488-PA 924 CG32488-RA 1..789 17..805 3945 100 Plus
CG32488-PA 924 CG32488-RA 789..822 804..837 170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32488-RB 1245 CG32488-RB 22..861 17..854 4150 99.8 Plus
CG32488-RA 1040 CG32488-RA 22..861 17..854 4150 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3015306..3016048 759..17 3715 100 Minus
3L 28110227 3L 3015145..3015241 854..760 385 97.9 Minus
Blast to na_te.dros performed on 2015-02-13 12:07:03 has no hits.

BO06341.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:52 Download gff for BO06341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32488-PA 1..840 17..854 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:35 Download gff for BO06341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32488-PA 1..840 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:08 Download gff for BO06341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32488-RA 18..861 10..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:26:04 Download gff for BO06341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32488-RA 18..861 10..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:26:04 Download gff for BO06341.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3015145..3015241 760..854 97 <- Minus
3L 3015306..3016052 10..759 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:08 Download gff for BO06341.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3015145..3015241 760..854 97 <- Minus
arm_3L 3015306..3016052 10..759 99   Minus

BO06341.complete Sequence

955 bp (955 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630357

> BO06341.complete
GAAGTTATCAGTCGACATGTTCAAGCATACTTTCACAGATTTGACCAAGT
TGCCGAAACAACGGGTTCGCCAATGGCTATCCACATTCGAATCCGTGATC
CTTGATGCCGATGGAGTCCTTTGGCACTTCTCGAAGGCAATTGACGGAGC
TGTGGATACTTTCAATTACATGAACACCACCGGCCGAAAGATTTTCATAA
TCTCTAACAATTCCGAGATTTCAAGGCAGGAGATGGCCGATAAGGCGAAA
GGTTTTGGCATAGAGATCAAGGAGGATAATGTACTGACTTCGTCCTTTTC
GTGTGCCAATTTCCTGGCTGTCAAAAACTTTCAGAAGAAGGTTTTCGTCA
TGGGCGAGAAAGGAGTTCATTTTGAGCTGGAAAAATTTGGCATCTGCTCC
CTGAAAATGTCCGAAAAGCTGGAGAAGCCCATGCACGAGTTCGTCACTGA
GTTGGAACTGGATCCCGATGTGGGAGCAGTAATTGTGGGCCGGGATGAGG
GTTTCAACATGGCCAAGCTGGTTCGAACCGGCAGCTATCTGCTGAATCCC
GATGTCATTTTTCTCGGCACCTGTTTAGATGCCGCCTATCCCATCGGAAA
TAACCGGGTGATGGTGGGCGCCGGTGCCACCTTGGCGGCCATGAAAGCCT
ATACCGGAAGGTCGCCGCTGGTGCTGGGAAAACCCAATCCCTGGATGGCG
TCTACACTCATGCAGTCCGGGGCCATAAAGCCGGAAACCACACTAATGGT
GGGCGATACACTGCAGACGGATATGCACTTCGCTTCCAACTGTGGTTTCC
AATCCCTGATGGTCGGCAGTGGTGTGAACACCCCGAAGGAAGTGCAGCAG
ATCATCGAGGAGGGTGACCCCAAGAAGAAGATCCTGGTGCCAGATACCTA
CCTTCCCAGCCTCGGCCACATGCTGGAGTTCCTCTGCGCAAGCTTTCTAG
ACCAT

BO06341.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32488-RB 924 CG32488-PB 1..921 17..937 4605 100 Plus
CG32488-RA 924 CG32488-PA 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG32488-RB 1245 CG32488-RB 22..942 17..937 4605 100 Plus
CG32488-RA 1040 CG32488-RA 22..942 17..937 4605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3015306..3016048 759..17 3715 100 Minus
3L 28110227 3L 3015064..3015241 937..760 890 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:50:35 has no hits.

BO06341.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:22 Download gff for BO06341.complete
Subject Subject Range Query Range Percent Splice Strand
CG32488-RA 1..924 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:38 Download gff for BO06341.complete
Subject Subject Range Query Range Percent Splice Strand
CG32488-RA 18..942 10..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:04 Download gff for BO06341.complete
Subject Subject Range Query Range Percent Splice Strand
CG32488-RA 27..942 22..939 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:23 Download gff for BO06341.complete
Subject Subject Range Query Range Percent Splice Strand
CG32488-RA 18..942 10..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:25 Download gff for BO06341.complete
Subject Subject Range Query Range Percent Splice Strand
CG32488-RA 27..942 22..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:25 Download gff for BO06341.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3015062..3015241 760..939 98 <- Minus
3L 3015306..3016043 22..759 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:04 Download gff for BO06341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3015062..3015241 760..939 98 <- Minus
arm_3L 3015306..3016043 22..759 100   Minus

BO06341.pep Sequence

Translation from 16 to 955

> BO06341.pep
MFKHTFTDLTKLPKQRVRQWLSTFESVILDADGVLWHFSKAIDGAVDTFN
YMNTTGRKIFIISNNSEISRQEMADKAKGFGIEIKEDNVLTSSFSCANFL
AVKNFQKKVFVMGEKGVHFELEKFGICSLKMSEKLEKPMHEFVTELELDP
DVGAVIVGRDEGFNMAKLVRTGSYLLNPDVIFLGTCLDAAYPIGNNRVMV
GAGATLAAMKAYTGRSPLVLGKPNPWMASTLMQSGAIKPETTLMVGDTLQ
TDMHFASNCGFQSLMVGSGVNTPKEVQQIIEEGDPKKKILVPDTYLPSLG
HMLEFLCASFLDH

BO06341.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG32488-PB 307 CG32488-PB 1..307 1..307 1595 100 Plus
CG32488-PA 307 CG32488-PA 1..307 1..307 1595 100 Plus
CG5567-PA 330 CG5567-PA 16..328 1..312 615 38.5 Plus
CG11291-PA 308 CG11291-PA 1..307 1..307 604 39.3 Plus
CG32487-PA 320 CG32487-PA 19..315 12..306 564 39.7 Plus