Clone Sequence Records
BO06341.3prime Sequence
909 bp (821 high quality bases) assembled on 2005-12-03
> BO06341.3prime
ATGGTCTAGAAAGCTTGCGCAGAGGAACTCCAGCATGTGGCCGAGGCTGG
GAAGGTAGGTATCTGGCACCAGGATCTTCTTCTTGGGGTCACCCTCCTCG
ATGATCTGCTGCACTTCCTTCGGGGTGTTCACACCACTGCCGACCATCAG
GGATTGGAAACCACAGTTGGAAGCGAAGTGCATATCCGTCTGCAGTGTAT
CGCCCACCATTAGTGTGGTTTCCGGCTTTATGGCCCCGGACTGCATGAGT
GTAGACGCCATCCAGGGATTGGGTTTTCCCAGCACCAGCGGCGACCTTCC
GGTATAGGCTTTCATGGCCGCCAAGGTGGCACCGGCGCCCACCATCACCC
GGTTATTTCCGATGGGATAGGCGGCATCTAAACAGGTGCCGAGAAAAATG
ACATCGGGATTCAGCAGATAGCTGCCGGTTCGAACCAGCTTGGCCATGTT
GAAACCCTCATCCCGGCCCACAATTACTGCTCCCACATCGGGATCCAGTT
CCAACTCAGTGACGAACTCGTGCATGGGCTTCTCCAGCTTTTCGGACATT
TTCAGGGAGCAGATGCCAAATTTTTCCAGCTCAAAATGAACTCCTTTCTC
GCCCATGACGAAAACCTTCTTCTGAAAGTTTTTGACAGCCAGGAAATTGG
CACACGAAAAGGACGAAGTCAGTACATTATCCTCCTTGATCTCTATGCCA
AAACCTTTCGCCTTATCGGCCATCTCCTGCCTTGAAATCTCGGAATTGTT
AGAGATTATGAAAATCTTTCGGCCGGTGGTGTTCATGTAATTGAAAGTAT
CCACAGCTCCGTCAATTGCCTTCGAGAAGTGCCAAAGGACTCCATCGGCA
TCAAGGATCACGGATTCGAATGTGGATAGCCATTGGCGAACCCCGTTTGT
TCGCCACTT
BO06341.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32488-PA | 924 | CG32488-RA | 47..921 | 893..19 | 4375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32488-RB | 1245 | CG32488-RB | 68..942 | 893..19 | 4375 | 100 | Minus |
CG32488-RA | 1040 | CG32488-RA | 68..942 | 893..19 | 4375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3015306..3016002 | 197..893 | 3485 | 100 | Plus |
3L | 28110227 | 3L | 3015064..3015241 | 19..196 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:56:09 has no hits.
BO06341.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:51 Download gff for
BO06341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32488-PA | 31..924 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:34 Download gff for
BO06341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32488-PA | 31..924 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:05 Download gff for
BO06341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32488-RA | 52..942 | 19..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:36:37 Download gff for
BO06341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32488-RA | 52..942 | 19..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:36:37 Download gff for
BO06341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3015064..3015241 | 19..196 | 100 | <- | Plus |
3L | 3015306..3016018 | 197..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:05 Download gff for
BO06341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3015064..3015241 | 19..196 | 100 | <- | Plus |
arm_3L | 3015306..3016018 | 197..909 | 99 | | Plus |
BO06341.5prime Sequence
854 bp (731 high quality bases) assembled on 2005-12-03
> BO06341.5prime
GAAGTTATCAGTCGACATGTTCAAGCATACTTTCACAGATTTGACCAAGT
TGCCGAAACAACGGGTTCGCCAATGGCTATCCACATTCGAATCCGTGATC
CTTGATGCCGATGGAGTCCTTTGGCACTTCTCGAAGGCAATTGACGGAGC
TGTGGATACTTTCAATTACATGAACACCACCGGCCGAAAGATTTTCATAA
TCTCTAACAATTCCGAGATTTCAAGGCAGGAGATGGCCGATAAGGCGAAA
GGTTTTGGCATAGAGATCAAGGAGGATAATGTACTGACTTCGTCCTTTTC
GTGTGCCAATTTCCTGGCTGTCAAAAACTTTCAGAAGAAGGTTTTCGTCA
TGGGCGAGAAAGGAGTTCATTTTGAGCTGGAAAAATTTGGCATCTGCTCC
CTGAAAATGTCCGAAAAGCTGGAGAAGCCCATGCACGAGTTCGTCACTGA
GTTGGAACTGGATCCCGATGTGGGAGCAGTAATTGTGGGCCGGGATGAGG
GTTTCAACATGGCCAAGCTGGTTCGAACCGGCAGCTATCTGCTGAATCCC
GATGTCATTTTTCTCGGCACCTGTTTAGATGCCGCCTATCCCATCGGAAA
TAACCGGGTGATGGTGGGCGCCGGTGCCACCTTGGCGGCCATGAAAGCCT
ATACCGGAAGGTCGCCGCTGGTGCTGGGAAAACCCAATCCCTGGATGGCG
TCTACACTCATGCAGTCCGGGGCCATAAAGCCGGAAACCACACTAATGGT
GGGCGATACACTGCAGACGGATATGCACTTCGCTTCCAACTGTGGTTTCC
AATCCTGATGGTCGGCAGTGGTGTGAACACCCCGAAGAAGTGCAGCAGAT
CATC
BO06341.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32488-PA | 924 | CG32488-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG32488-PA | 924 | CG32488-RA | 789..822 | 804..837 | 170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32488-RB | 1245 | CG32488-RB | 22..861 | 17..854 | 4150 | 99.8 | Plus |
CG32488-RA | 1040 | CG32488-RA | 22..861 | 17..854 | 4150 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3015306..3016048 | 759..17 | 3715 | 100 | Minus |
3L | 28110227 | 3L | 3015145..3015241 | 854..760 | 385 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:07:03 has no hits.
BO06341.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:52 Download gff for
BO06341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32488-PA | 1..840 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:35 Download gff for
BO06341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32488-PA | 1..840 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:08 Download gff for
BO06341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32488-RA | 18..861 | 10..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:26:04 Download gff for
BO06341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32488-RA | 18..861 | 10..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:26:04 Download gff for
BO06341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3015145..3015241 | 760..854 | 97 | <- | Minus |
3L | 3015306..3016052 | 10..759 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:08 Download gff for
BO06341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3015145..3015241 | 760..854 | 97 | <- | Minus |
arm_3L | 3015306..3016052 | 10..759 | 99 | | Minus |
BO06341.complete Sequence
955 bp (955 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630357
> BO06341.complete
GAAGTTATCAGTCGACATGTTCAAGCATACTTTCACAGATTTGACCAAGT
TGCCGAAACAACGGGTTCGCCAATGGCTATCCACATTCGAATCCGTGATC
CTTGATGCCGATGGAGTCCTTTGGCACTTCTCGAAGGCAATTGACGGAGC
TGTGGATACTTTCAATTACATGAACACCACCGGCCGAAAGATTTTCATAA
TCTCTAACAATTCCGAGATTTCAAGGCAGGAGATGGCCGATAAGGCGAAA
GGTTTTGGCATAGAGATCAAGGAGGATAATGTACTGACTTCGTCCTTTTC
GTGTGCCAATTTCCTGGCTGTCAAAAACTTTCAGAAGAAGGTTTTCGTCA
TGGGCGAGAAAGGAGTTCATTTTGAGCTGGAAAAATTTGGCATCTGCTCC
CTGAAAATGTCCGAAAAGCTGGAGAAGCCCATGCACGAGTTCGTCACTGA
GTTGGAACTGGATCCCGATGTGGGAGCAGTAATTGTGGGCCGGGATGAGG
GTTTCAACATGGCCAAGCTGGTTCGAACCGGCAGCTATCTGCTGAATCCC
GATGTCATTTTTCTCGGCACCTGTTTAGATGCCGCCTATCCCATCGGAAA
TAACCGGGTGATGGTGGGCGCCGGTGCCACCTTGGCGGCCATGAAAGCCT
ATACCGGAAGGTCGCCGCTGGTGCTGGGAAAACCCAATCCCTGGATGGCG
TCTACACTCATGCAGTCCGGGGCCATAAAGCCGGAAACCACACTAATGGT
GGGCGATACACTGCAGACGGATATGCACTTCGCTTCCAACTGTGGTTTCC
AATCCCTGATGGTCGGCAGTGGTGTGAACACCCCGAAGGAAGTGCAGCAG
ATCATCGAGGAGGGTGACCCCAAGAAGAAGATCCTGGTGCCAGATACCTA
CCTTCCCAGCCTCGGCCACATGCTGGAGTTCCTCTGCGCAAGCTTTCTAG
ACCAT
BO06341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32488-RB | 924 | CG32488-PB | 1..921 | 17..937 | 4605 | 100 | Plus |
CG32488-RA | 924 | CG32488-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32488-RB | 1245 | CG32488-RB | 22..942 | 17..937 | 4605 | 100 | Plus |
CG32488-RA | 1040 | CG32488-RA | 22..942 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3015306..3016048 | 759..17 | 3715 | 100 | Minus |
3L | 28110227 | 3L | 3015064..3015241 | 937..760 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:50:35 has no hits.
BO06341.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:22 Download gff for
BO06341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32488-RA | 1..924 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:38 Download gff for
BO06341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32488-RA | 18..942 | 10..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:04 Download gff for
BO06341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32488-RA | 27..942 | 22..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:23 Download gff for
BO06341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32488-RA | 18..942 | 10..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:25 Download gff for
BO06341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32488-RA | 27..942 | 22..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:25 Download gff for
BO06341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3015062..3015241 | 760..939 | 98 | <- | Minus |
3L | 3015306..3016043 | 22..759 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:04 Download gff for
BO06341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3015062..3015241 | 760..939 | 98 | <- | Minus |
arm_3L | 3015306..3016043 | 22..759 | 100 | | Minus |
BO06341.pep Sequence
Translation from 16 to 955
> BO06341.pep
MFKHTFTDLTKLPKQRVRQWLSTFESVILDADGVLWHFSKAIDGAVDTFN
YMNTTGRKIFIISNNSEISRQEMADKAKGFGIEIKEDNVLTSSFSCANFL
AVKNFQKKVFVMGEKGVHFELEKFGICSLKMSEKLEKPMHEFVTELELDP
DVGAVIVGRDEGFNMAKLVRTGSYLLNPDVIFLGTCLDAAYPIGNNRVMV
GAGATLAAMKAYTGRSPLVLGKPNPWMASTLMQSGAIKPETTLMVGDTLQ
TDMHFASNCGFQSLMVGSGVNTPKEVQQIIEEGDPKKKILVPDTYLPSLG
HMLEFLCASFLDH
BO06341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32488-PB | 307 | CG32488-PB | 1..307 | 1..307 | 1595 | 100 | Plus |
CG32488-PA | 307 | CG32488-PA | 1..307 | 1..307 | 1595 | 100 | Plus |
CG5567-PA | 330 | CG5567-PA | 16..328 | 1..312 | 615 | 38.5 | Plus |
CG11291-PA | 308 | CG11291-PA | 1..307 | 1..307 | 604 | 39.3 | Plus |
CG32487-PA | 320 | CG32487-PA | 19..315 | 12..306 | 564 | 39.7 | Plus |