Clone Sequence Records
BO06351.5prime Sequence
473 bp (472 high quality bases) assembled on 2005-12-03
> BO06351.5prime
GAAGTTATCAGTCGACATGGTGTCGAGTGTAAAAATGATCTTGGCTCTCA
CCGTCTTGGCCACCGTAGCCTGCACTGGCTACGCCATCAAGTGCTATCAG
TGCGATTCCTTGACTAATTCCGAGTGTGGAAAGGACATCAAGTCAGACAG
TAGCCTCGTTTTGGATTGCACCAAGATGGCTCCACCTCGATTCCTCCAGA
ACTTCTTCCCGGTTCGCAACGCCACCGGTTGCATGAAGCAGACCATCGAC
ATTCCCGGTAACCCGCAAATCGTGAGGTCCTGCTACTTTGGCAACATCGC
CGACACGAAGGTTGGATGCCAGACCGATCCCAGCCTGACGATCAACAAGT
TGCTGAGCTGCGAGGTTTGCACCGAGGACGAGTGCAACGGAACCTCCTCC
CTGGCCCCCATCGCCGGAGTCATACTCCTGTTCTTTGGCCTGGCCCGTCT
GCTAGCCGCAAGCTTTCTAGACC
BO06351.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9338-PA | 444 | CG9338-RA | 1..441 | 17..457 | 2205 | 100 | Plus |
CG9336-PA | 447 | CG9336-RA | 344..406 | 357..419 | 215 | 93.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:12:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9338-RB | 1087 | CG9338-RB | 79..519 | 17..457 | 2205 | 100 | Plus |
CG9338-RA | 689 | CG9338-RA | 79..519 | 17..457 | 2205 | 100 | Plus |
CG9336-RB | 636 | CG9336-RB | 211..509 | 162..457 | 450 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20866936..20867141 | 252..457 | 1030 | 100 | Plus |
2L | 23513712 | 2L | 20865411..20865585 | 77..251 | 875 | 100 | Plus |
2L | 23513712 | 2L | 20860693..20860887 | 263..457 | 345 | 78.5 | Plus |
2L | 23513712 | 2L | 20865293..20865354 | 17..78 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:12:45 has no hits.
BO06351.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:07 Download gff for
BO06351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9338-PA | 1..444 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:57 Download gff for
BO06351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9338-PA | 1..444 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:05:42 Download gff for
BO06351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9338-RA | 79..523 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:17:58 Download gff for
BO06351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9338-RA | 79..523 | 17..461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:17:58 Download gff for
BO06351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20865293..20865353 | 17..77 | 100 | -> | Plus |
2L | 20865412..20865585 | 78..251 | 100 | -> | Plus |
2L | 20866936..20867145 | 252..461 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:05:42 Download gff for
BO06351.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20865293..20865353 | 17..77 | 100 | -> | Plus |
arm_2L | 20865412..20865585 | 78..251 | 100 | -> | Plus |
arm_2L | 20866936..20867145 | 252..461 | 99 | | Plus |
BO06351.3prime Sequence
473 bp (472 high quality bases) assembled on 2005-12-03
> BO06351.3prime
ATGGTCTAGAAAGCTTGCGGCTAGCAGACGGGCCAGGCCAAAGAACAGGA
GTATGACTCCGGCGATGGGGGCCAGGGAGGAGGTTCCGTTGCACTCGTCC
TCGGTGCAAACCTCGCAGCTCAGCAACTTGTTGATCGTCAGGCTGGGATC
GGTCTGGCATCCAACCTTCGTGTCGGCGATGTTGCCAAAGTAGCAGGACC
TCACGATTTGCGGGTTACCGGGAATGTCGATGGTCTGCTTCATGCAACCG
GTGGCGTTGCGAACCGGGAAGAAGTTCTGGAGGAATCGAGGTGGAGCCAT
CTTGGTGCAATCCAAAACGAGGCTACTGTCTGACTTGATGTCCTTTCCAC
ACTCGGAATTAGTCAAGGAATCGCACTGATAGCACTTGATGGCGTAGCCA
GTGCAGGCTACGGTGGCCAAGACGGTGAGAGCCAAGATCATTTTTACACT
CGACACCATGTCGACTGATAACT
BO06351.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9338-PA | 444 | CG9338-RA | 1..441 | 459..19 | 2205 | 100 | Minus |
CG9336-PA | 447 | CG9336-RA | 344..406 | 119..57 | 215 | 93.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9338-RB | 1087 | CG9338-RB | 79..519 | 459..19 | 2205 | 100 | Minus |
CG9338-RA | 689 | CG9338-RA | 79..519 | 459..19 | 2205 | 100 | Minus |
CG9336-RB | 636 | CG9336-RB | 211..509 | 314..19 | 450 | 77.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20866936..20867141 | 224..19 | 1030 | 100 | Minus |
2L | 23513712 | 2L | 20865411..20865585 | 399..225 | 875 | 100 | Minus |
2L | 23513712 | 2L | 20860693..20860887 | 213..19 | 345 | 78.5 | Minus |
2L | 23513712 | 2L | 20865293..20865354 | 459..398 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:07:13 has no hits.
BO06351.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:06 Download gff for
BO06351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9338-PA | 1..444 | 16..459 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:56 Download gff for
BO06351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9338-PA | 1..444 | 16..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:12 Download gff for
BO06351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9338-RA | 79..523 | 15..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:26:22 Download gff for
BO06351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9338-RA | 79..523 | 15..459 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:26:22 Download gff for
BO06351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20865412..20865585 | 225..398 | 100 | -> | Minus |
2L | 20866936..20867145 | 15..224 | 99 | | Minus |
2L | 20865293..20865353 | 399..459 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:12 Download gff for
BO06351.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20865293..20865353 | 399..459 | 100 | -> | Minus |
arm_2L | 20865412..20865585 | 225..398 | 100 | -> | Minus |
arm_2L | 20866936..20867145 | 15..224 | 99 | | Minus |
BO06351.complete Sequence
475 bp (475 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630359
> BO06351.complete
GAAGTTATCAGTCGACATGGTGTCGAGTGTAAAAATGATCTTGGCTCTCA
CCGTCTTGGCCACCGTAGCCTGCACTGGCTACGCCATCAAGTGCTATCAG
TGCGATTCCTTGACTAATTCCGAGTGTGGAAAGGACATCAAGTCAGACAG
TAGCCTCGTTTTGGATTGCACCAAGATGGCTCCACCTCGATTCCTCCAGA
ACTTCTTCCCGGTTCGCAACGCCACCGGTTGCATGAAGCAGACCATCGAC
ATTCCCGGTAACCCGCAAATCGTGAGGTCCTGCTACTTTGGCAACATCGC
CGACACGAAGGTTGGATGCCAGACCGATCCCAGCCTGACGATCAACAAGT
TGCTGAGCTGCGAGGTTTGCACCGAGGACGAGTGCAACGGAACCTCCTCC
CTGGCCCCCATCGCCGGAGTCATACTCCTGTTCTTTGGCCTGGCCCGTCT
GCTAGCCGCAAGCTTTCTAGACCAT
BO06351.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9338-RB | 444 | CG9338-PB | 1..441 | 17..457 | 2205 | 100 | Plus |
CG9338-RA | 444 | CG9338-PA | 1..441 | 17..457 | 2205 | 100 | Plus |
CG9336-RB | 348 | CG9336-PB | 47..345 | 162..457 | 425 | 76.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9338-RB | 1087 | CG9338-RB | 79..519 | 17..457 | 2205 | 100 | Plus |
CG9338-RA | 689 | CG9338-RA | 79..519 | 17..457 | 2205 | 100 | Plus |
CG9336-RB | 636 | CG9336-RB | 211..509 | 162..457 | 425 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20866936..20867141 | 252..457 | 1030 | 100 | Plus |
2L | 23513712 | 2L | 20865411..20865585 | 77..251 | 875 | 100 | Plus |
2L | 23513712 | 2L | 20860693..20860887 | 263..457 | 345 | 78.5 | Plus |
2L | 23513712 | 2L | 20865293..20865354 | 17..78 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:15:53 has no hits.
BO06351.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:16 Download gff for
BO06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9338-RA | 1..444 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:29 Download gff for
BO06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9338-RA | 67..511 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:11 Download gff for
BO06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9338-RA | 79..519 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:17 Download gff for
BO06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9338-RA | 67..511 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:22 Download gff for
BO06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9338-RA | 79..519 | 17..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:22 Download gff for
BO06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20865412..20865585 | 78..251 | 100 | -> | Plus |
2L | 20866936..20867141 | 252..459 | 99 | | Plus |
2L | 20865293..20865353 | 17..77 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:11 Download gff for
BO06351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20865293..20865353 | 17..77 | 100 | -> | Plus |
arm_2L | 20865412..20865585 | 78..251 | 100 | -> | Plus |
arm_2L | 20866936..20867141 | 252..459 | 99 | | Plus |
BO06351.pep Sequence
Translation from 16 to 475
> BO06351.pep
MVSSVKMILALTVLATVACTGYAIKCYQCDSLTNSECGKDIKSDSSLVLD
CTKMAPPRFLQNFFPVRNATGCMKQTIDIPGNPQIVRSCYFGNIADTKVG
CQTDPSLTINKLLSCEVCTEDECNGTSSLAPIAGVILLFFGLARLLAASF
LDH
BO06351.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9338-PB | 147 | CG9338-PB | 1..147 | 1..147 | 770 | 100 | Plus |
CG9338-PA | 147 | CG9338-PA | 1..147 | 1..147 | 770 | 100 | Plus |
CG9336-PA | 148 | CG9336-PA | 1..148 | 1..147 | 524 | 62.8 | Plus |
CG9336-PB | 115 | CG9336-PB | 3..115 | 36..147 | 415 | 64.6 | Plus |
CG31675-PA | 148 | CG31675-PA | 5..148 | 8..146 | 258 | 38.2 | Plus |