Clone BO06351 Report

Search the DGRC for BO06351

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG9338-RA
Protein status:BO06351.pep: validated full length
Sequenced Size:475

Clone Sequence Records

BO06351.5prime Sequence

473 bp (472 high quality bases) assembled on 2005-12-03

> BO06351.5prime
GAAGTTATCAGTCGACATGGTGTCGAGTGTAAAAATGATCTTGGCTCTCA
CCGTCTTGGCCACCGTAGCCTGCACTGGCTACGCCATCAAGTGCTATCAG
TGCGATTCCTTGACTAATTCCGAGTGTGGAAAGGACATCAAGTCAGACAG
TAGCCTCGTTTTGGATTGCACCAAGATGGCTCCACCTCGATTCCTCCAGA
ACTTCTTCCCGGTTCGCAACGCCACCGGTTGCATGAAGCAGACCATCGAC
ATTCCCGGTAACCCGCAAATCGTGAGGTCCTGCTACTTTGGCAACATCGC
CGACACGAAGGTTGGATGCCAGACCGATCCCAGCCTGACGATCAACAAGT
TGCTGAGCTGCGAGGTTTGCACCGAGGACGAGTGCAACGGAACCTCCTCC
CTGGCCCCCATCGCCGGAGTCATACTCCTGTTCTTTGGCCTGGCCCGTCT
GCTAGCCGCAAGCTTTCTAGACC

BO06351.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9338-PA 444 CG9338-RA 1..441 17..457 2205 100 Plus
CG9336-PA 447 CG9336-RA 344..406 357..419 215 93.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9338-RB 1087 CG9338-RB 79..519 17..457 2205 100 Plus
CG9338-RA 689 CG9338-RA 79..519 17..457 2205 100 Plus
CG9336-RB 636 CG9336-RB 211..509 162..457 450 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20866936..20867141 252..457 1030 100 Plus
2L 23513712 2L 20865411..20865585 77..251 875 100 Plus
2L 23513712 2L 20860693..20860887 263..457 345 78.5 Plus
2L 23513712 2L 20865293..20865354 17..78 310 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:12:45 has no hits.

BO06351.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:07 Download gff for BO06351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9338-PA 1..444 17..460 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:57 Download gff for BO06351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9338-PA 1..444 17..460 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:05:42 Download gff for BO06351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9338-RA 79..523 17..461 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:17:58 Download gff for BO06351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9338-RA 79..523 17..461 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:17:58 Download gff for BO06351.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20865293..20865353 17..77 100 -> Plus
2L 20865412..20865585 78..251 100 -> Plus
2L 20866936..20867145 252..461 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:05:42 Download gff for BO06351.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20865293..20865353 17..77 100 -> Plus
arm_2L 20865412..20865585 78..251 100 -> Plus
arm_2L 20866936..20867145 252..461 99   Plus

BO06351.3prime Sequence

473 bp (472 high quality bases) assembled on 2005-12-03

> BO06351.3prime
ATGGTCTAGAAAGCTTGCGGCTAGCAGACGGGCCAGGCCAAAGAACAGGA
GTATGACTCCGGCGATGGGGGCCAGGGAGGAGGTTCCGTTGCACTCGTCC
TCGGTGCAAACCTCGCAGCTCAGCAACTTGTTGATCGTCAGGCTGGGATC
GGTCTGGCATCCAACCTTCGTGTCGGCGATGTTGCCAAAGTAGCAGGACC
TCACGATTTGCGGGTTACCGGGAATGTCGATGGTCTGCTTCATGCAACCG
GTGGCGTTGCGAACCGGGAAGAAGTTCTGGAGGAATCGAGGTGGAGCCAT
CTTGGTGCAATCCAAAACGAGGCTACTGTCTGACTTGATGTCCTTTCCAC
ACTCGGAATTAGTCAAGGAATCGCACTGATAGCACTTGATGGCGTAGCCA
GTGCAGGCTACGGTGGCCAAGACGGTGAGAGCCAAGATCATTTTTACACT
CGACACCATGTCGACTGATAACT

BO06351.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9338-PA 444 CG9338-RA 1..441 459..19 2205 100 Minus
CG9336-PA 447 CG9336-RA 344..406 119..57 215 93.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9338-RB 1087 CG9338-RB 79..519 459..19 2205 100 Minus
CG9338-RA 689 CG9338-RA 79..519 459..19 2205 100 Minus
CG9336-RB 636 CG9336-RB 211..509 314..19 450 77.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20866936..20867141 224..19 1030 100 Minus
2L 23513712 2L 20865411..20865585 399..225 875 100 Minus
2L 23513712 2L 20860693..20860887 213..19 345 78.5 Minus
2L 23513712 2L 20865293..20865354 459..398 310 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:07:13 has no hits.

BO06351.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:06 Download gff for BO06351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9338-PA 1..444 16..459 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:56 Download gff for BO06351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9338-PA 1..444 16..459 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:12 Download gff for BO06351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9338-RA 79..523 15..459 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:26:22 Download gff for BO06351.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9338-RA 79..523 15..459 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:26:22 Download gff for BO06351.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20865412..20865585 225..398 100 -> Minus
2L 20866936..20867145 15..224 99   Minus
2L 20865293..20865353 399..459 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:12 Download gff for BO06351.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20865293..20865353 399..459 100 -> Minus
arm_2L 20865412..20865585 225..398 100 -> Minus
arm_2L 20866936..20867145 15..224 99   Minus

BO06351.complete Sequence

475 bp (475 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630359

> BO06351.complete
GAAGTTATCAGTCGACATGGTGTCGAGTGTAAAAATGATCTTGGCTCTCA
CCGTCTTGGCCACCGTAGCCTGCACTGGCTACGCCATCAAGTGCTATCAG
TGCGATTCCTTGACTAATTCCGAGTGTGGAAAGGACATCAAGTCAGACAG
TAGCCTCGTTTTGGATTGCACCAAGATGGCTCCACCTCGATTCCTCCAGA
ACTTCTTCCCGGTTCGCAACGCCACCGGTTGCATGAAGCAGACCATCGAC
ATTCCCGGTAACCCGCAAATCGTGAGGTCCTGCTACTTTGGCAACATCGC
CGACACGAAGGTTGGATGCCAGACCGATCCCAGCCTGACGATCAACAAGT
TGCTGAGCTGCGAGGTTTGCACCGAGGACGAGTGCAACGGAACCTCCTCC
CTGGCCCCCATCGCCGGAGTCATACTCCTGTTCTTTGGCCTGGCCCGTCT
GCTAGCCGCAAGCTTTCTAGACCAT

BO06351.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9338-RB 444 CG9338-PB 1..441 17..457 2205 100 Plus
CG9338-RA 444 CG9338-PA 1..441 17..457 2205 100 Plus
CG9336-RB 348 CG9336-PB 47..345 162..457 425 76.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9338-RB 1087 CG9338-RB 79..519 17..457 2205 100 Plus
CG9338-RA 689 CG9338-RA 79..519 17..457 2205 100 Plus
CG9336-RB 636 CG9336-RB 211..509 162..457 425 76.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20866936..20867141 252..457 1030 100 Plus
2L 23513712 2L 20865411..20865585 77..251 875 100 Plus
2L 23513712 2L 20860693..20860887 263..457 345 78.5 Plus
2L 23513712 2L 20865293..20865354 17..78 310 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:15:53 has no hits.

BO06351.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:16 Download gff for BO06351.complete
Subject Subject Range Query Range Percent Splice Strand
CG9338-RA 1..444 17..460 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:29 Download gff for BO06351.complete
Subject Subject Range Query Range Percent Splice Strand
CG9338-RA 67..511 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:11 Download gff for BO06351.complete
Subject Subject Range Query Range Percent Splice Strand
CG9338-RA 79..519 17..459 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:17 Download gff for BO06351.complete
Subject Subject Range Query Range Percent Splice Strand
CG9338-RA 67..511 17..461 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:22 Download gff for BO06351.complete
Subject Subject Range Query Range Percent Splice Strand
CG9338-RA 79..519 17..459 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:22 Download gff for BO06351.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20865412..20865585 78..251 100 -> Plus
2L 20866936..20867141 252..459 99   Plus
2L 20865293..20865353 17..77 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:11 Download gff for BO06351.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20865293..20865353 17..77 100 -> Plus
arm_2L 20865412..20865585 78..251 100 -> Plus
arm_2L 20866936..20867141 252..459 99   Plus

BO06351.pep Sequence

Translation from 16 to 475

> BO06351.pep
MVSSVKMILALTVLATVACTGYAIKCYQCDSLTNSECGKDIKSDSSLVLD
CTKMAPPRFLQNFFPVRNATGCMKQTIDIPGNPQIVRSCYFGNIADTKVG
CQTDPSLTINKLLSCEVCTEDECNGTSSLAPIAGVILLFFGLARLLAASF
LDH

BO06351.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9338-PB 147 CG9338-PB 1..147 1..147 770 100 Plus
CG9338-PA 147 CG9338-PA 1..147 1..147 770 100 Plus
CG9336-PA 148 CG9336-PA 1..148 1..147 524 62.8 Plus
CG9336-PB 115 CG9336-PB 3..115 36..147 415 64.6 Plus
CG31675-PA 148 CG31675-PA 5..148 8..146 258 38.2 Plus