Clone BO06352 Report

Search the DGRC for BO06352

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptProsbeta4R2-RA
Protein status:BO06352.pep: validated full length
Sequenced Size:664

Clone Sequence Records

BO06352.3prime Sequence

662 bp (661 high quality bases) assembled on 2005-12-03

> BO06352.3prime
ATGGTCTAGAAAGCTTGCCCAACTCAGGCTTATCGACTCCTTGTTTAGGG
ATCCTGGATTGATGGCCTCCATCTTGCGCATTCCCTTGCTGTCCACTACA
TACACCTCAAAGTTCCGCTGGTTGATGATCAGTCGCCTTTGGATCTCCAG
GACGCACTTCTTCATCAGCGAGTAGGCATCCTCTTGGCTGAGCTTCGAGT
TCCAATATCTCTGCAGAATGCTGCCACAGAACATGCTGCCCCAACCATGA
CCTGCATGATTGATTGACTGAGCAGCGCCATAGGAGTCGATGTAGTGGAG
GTCAGGTCCCTCAACCGCATCGTATCCTGCCAGGAGCATTGCCACCTGGT
ATCTGGTGTTGGTCCTTATATAATCCGCCAGTGTTTTCCTGGTAAAATGG
GCAGCTGACTTCGCACTTAGATGGTATCCGTGGGAAATCTTGTACAGATG
CAAATTTTTGGATATGAAGTCGGTGAACTGAATGGTATCGCCACCATCAC
CCACCGTGGCCATCATATTGAAGTCTGATAGTCGGTGGATTTTTGATTGG
TCATCTTTCATGAAGACCAGCGATTTGGCCTGCATTGTATCTGATGCTAG
CATCACAAAGTCTGGTCCCTTGATCCCCAAAATAGTTTCCATCGCCATGT
CGACTGATAACT

BO06352.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17302-PA 633 CG17302-RA 1..630 648..19 3150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R2-RB 1647 CG17302-RB 66..696 649..19 3155 100 Minus
Prosbeta4R2-RA 757 CG17302-RA 66..696 649..19 3155 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2655618..2656151 552..19 2670 100 Minus
2L 23513712 2L 2655459..2655556 649..552 490 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:41:13 has no hits.

BO06352.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:08 Download gff for BO06352.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17302-PA 1..633 15..648 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:58 Download gff for BO06352.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17302-PA 1..633 15..648 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:40 Download gff for BO06352.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 66..702 13..649 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:16 Download gff for BO06352.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 66..702 13..649 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:16 Download gff for BO06352.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2655459..2655556 552..649 100 -> Minus
2L 2655619..2656157 13..551 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:40 Download gff for BO06352.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2655459..2655556 552..649 100 -> Minus
arm_2L 2655619..2656157 13..551 99   Minus

BO06352.5prime Sequence

662 bp (661 high quality bases) assembled on 2005-12-03

> BO06352.5prime
GAAGTTATCAGTCGACATGGCGATGGAAACTATTTTGGGGATCAAGGGAC
CAGACTTTGTGATGCTAGCATCAGATACAATGCAGGCCAAATCGCTGGTC
TTCATGAAAGATGACCAATCAAAAATCCACCGACTATCAGACTTCAATAT
GATGGCCACGGTGGGTGATGGTGGCGATACCATTCAGTTCACCGACTTCA
TATCCAAAAATTTGCATCTGTACAAGATTTCCCACGGATACCATCTAAGT
GCGAAGTCAGCTGCCCATTTTACCAGGAAAACACTGGCGGATTATATAAG
GACCAACACCAGATACCAGGTGGCAATGCTCCTGGCAGGATACGATGCGG
TTGAGGGACCTGACCTCCACTACATCGACTCCTATGGCGCTGCTCAGTCA
ATCAATCATGCAGGTCATGGTTGGGGCAGCATGTTCTGTGGCAGCATTCT
GCAGAGATATTGGAACTCGAAGCTCAGCCAAGAGGATGCCTACTCGCTGA
TGAAGAAGTGCGTCCTGGAGATCCAAAGGCGACTGATCATCAACCAGCGG
AACTTTGAGGTGTATGTAGTGGACAGCAAGGGAATGCGCAAGATGGAGGC
CATCAATCCAGGATCCCTAAACAAGGAGTCGATAAGCCTGAGTTGGGCAA
GCTTTCTAGACC

BO06352.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17302-PA 633 CG17302-RA 1..630 17..646 3150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R2-RB 1647 CG17302-RB 66..696 16..646 3155 100 Plus
Prosbeta4R2-RA 757 CG17302-RA 66..696 16..646 3155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2655618..2656151 113..646 2670 100 Plus
2L 23513712 2L 2655459..2655556 16..113 490 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:23:13 has no hits.

BO06352.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:09 Download gff for BO06352.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17302-PA 1..633 17..650 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:59 Download gff for BO06352.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17302-PA 1..633 17..650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:12 Download gff for BO06352.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 66..702 16..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:15 Download gff for BO06352.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 66..702 16..652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:15 Download gff for BO06352.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2655459..2655556 16..113 100 -> Plus
2L 2655619..2656157 114..652 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:12 Download gff for BO06352.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2655459..2655556 16..113 100 -> Plus
arm_2L 2655619..2656157 114..652 99   Plus

BO06352.complete Sequence

664 bp (664 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630360

> BO06352.complete
GAAGTTATCAGTCGACATGGCGATGGAAACTATTTTGGGGATCAAGGGAC
CAGACTTTGTGATGCTAGCATCAGATACAATGCAGGCCAAATCGCTGGTC
TTCATGAAAGATGACCAATCAAAAATCCACCGACTATCAGACTTCAATAT
GATGGCCACGGTGGGTGATGGTGGCGATACCATTCAGTTCACCGACTTCA
TATCCAAAAATTTGCATCTGTACAAGATTTCCCACGGATACCATCTAAGT
GCGAAGTCAGCTGCCCATTTTACCAGGAAAACACTGGCGGATTATATAAG
GACCAACACCAGATACCAGGTGGCAATGCTCCTGGCAGGATACGATGCGG
TTGAGGGACCTGACCTCCACTACATCGACTCCTATGGCGCTGCTCAGTCA
ATCAATCATGCAGGTCATGGTTGGGGCAGCATGTTCTGTGGCAGCATTCT
GCAGAGATATTGGAACTCGAAGCTCAGCCAAGAGGATGCCTACTCGCTGA
TGAAGAAGTGCGTCCTGGAGATCCAAAGGCGACTGATCATCAACCAGCGG
AACTTTGAGGTGTATGTAGTGGACAGCAAGGGAATGCGCAAGATGGAGGC
CATCAATCCAGGATCCCTAAACAAGGAGTCGATAAGCCTGAGTTGGGCAA
GCTTTCTAGACCAT

BO06352.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R2-RB 633 CG17302-PB 1..630 17..646 3150 100 Plus
Prosbeta4R2-RA 633 CG17302-PA 1..630 17..646 3150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R2-RB 1647 CG17302-RB 66..696 16..646 3155 100 Plus
Prosbeta4R2-RA 757 CG17302-RA 66..696 16..646 3155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2655618..2656151 113..646 2670 100 Plus
2L 23513712 2L 2655459..2655556 16..113 490 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:01:43 has no hits.

BO06352.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:34:51 Download gff for BO06352.complete
Subject Subject Range Query Range Percent Splice Strand
CG17302-RA 1..633 17..650 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:57 Download gff for BO06352.complete
Subject Subject Range Query Range Percent Splice Strand
CG17302-RA 66..702 16..652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:57 Download gff for BO06352.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 67..696 17..648 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:34:52 Download gff for BO06352.complete
Subject Subject Range Query Range Percent Splice Strand
CG17302-RA 66..702 16..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:18 Download gff for BO06352.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4R2-RA 67..696 17..648 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:18 Download gff for BO06352.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2655460..2655556 17..113 100 -> Plus
2L 2655619..2656151 114..648 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:57 Download gff for BO06352.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2655460..2655556 17..113 100 -> Plus
arm_2L 2655619..2656151 114..648 99   Plus

BO06352.pep Sequence

Translation from 16 to 664

> BO06352.pep
MAMETILGIKGPDFVMLASDTMQAKSLVFMKDDQSKIHRLSDFNMMATVG
DGGDTIQFTDFISKNLHLYKISHGYHLSAKSAAHFTRKTLADYIRTNTRY
QVAMLLAGYDAVEGPDLHYIDSYGAAQSINHAGHGWGSMFCGSILQRYWN
SKLSQEDAYSLMKKCVLEIQRRLIINQRNFEVYVVDSKGMRKMEAINPGS
LNKESISLSWASFLDH

BO06352.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta4R2-PB 210 CG17302-PB 1..210 1..210 1094 100 Plus
Prosbeta4R2-PA 210 CG17302-PA 1..210 1..210 1094 100 Plus
Prosbeta4-PB 201 CG17331-PB 1..199 3..201 609 55.3 Plus
Prosbeta4-PA 201 CG17331-PA 1..199 3..201 609 55.3 Plus
Prosbeta4R1-PA 215 CG17301-PA 1..205 3..207 525 43.9 Plus