Clone Sequence Records
BO06354.3prime Sequence
875 bp (802 high quality bases) assembled on 2005-12-03
> BO06354.3prime
ATGGTCTAGAAAGCTTGCCACCATGTAGTGTCGTATATCAAGATTGCGTT
CCCTTAGCTTCAAATCGATCCACTGCCGGTACAACTTGACGTTTGTGTAA
ATTCCAAGAAGTTGCGGGCCATCGCAGCGAGCCGTGCGGGTCAAAAGACC
GGCCAGGTGGAAACGATCATCGTGACCGGAAAGAGGACACATCAGCGGCA
CAGCGGTCATGTCCACATCACCGCAGACGAAGTCACCCTTGTCGCCGCCG
GCACACAGCAGGCTATCGTTGTGGGCGTGGCGTCGCCCCAAGAGGGACAA
TCGCAACTTGGTCCTGCATTGATCGGGTGGTAGGACGTAGAGTGTCCAAC
GCTTGGGCAGGATTGCAGCTCTACCAAAATCACTCCTCTGCCAACCGGAC
ACATAGCACTGGCTGTAGTTGTACATTATTCGCGGAGGCGGCAAGCAAAT
GGGCTGTACATTAGGAGCCAGCTGGAAAGGTTTCTCCTTGTCCACCAGAA
GTATCGCTATGTTGTGGGCCAATGGCATTTGAGTGTAATTGGGATGCACT
AATGTCTCAACAACCGATCTTTGCTGGTGCGGCTGGGGCTCCAGCTCCAC
GGCGGCATCCCATTCCCCGGCCAACAGACGAACCTTCTCCATTTCCGAAT
TCTGAACGCAGTGCGCGGTGGTGATCACCGCCAGCGGAGTGATAAGTGCT
CCACTGCAGAGATAAGTATCCGACCCGTAGACCGCCACCAACCAGGGAAA
CTCCCCGAACTTGGCCTCTTGCTGTTTATATCCCAGCGGTCGAAGGTAGT
ACCAGAGATCATGGCGTCCTCCACACGGGCAGCTCATCATCTCCTCTGGA
ATTTTCGGAGTCGGGAGTTTATCGG
BO06354.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9377-PA | 1068 | CG9377-RA | 209..1065 | 875..19 | 4285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:43:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9377-RA | 1191 | CG9377-RA | 291..1147 | 875..19 | 4285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13359945..13360793 | 19..867 | 4245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:43:19 has no hits.
BO06354.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:10 Download gff for
BO06354.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-PA | 209..1068 | 16..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:01 Download gff for
BO06354.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-PA | 209..1068 | 16..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:51 Download gff for
BO06354.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-RA | 291..1151 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:08 Download gff for
BO06354.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-RA | 291..1151 | 15..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:08 Download gff for
BO06354.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13359940..13360800 | 15..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:51 Download gff for
BO06354.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13359940..13360800 | 15..875 | 99 | | Plus |
BO06354.5prime Sequence
856 bp (801 high quality bases) assembled on 2005-12-03
> BO06354.5prime
GAAGTTATCAGTCGACATGTGCTTCTATCGGATTGTGGTCATCTGTCTTC
TAGGCTCCCTAGTGCCCTCCATAGCGGCATCCAAAGTCTGCGGACCGGAA
AAGCATTGCGTTCCCTACGAGCAGTGCAACGAGGGCTTAATGGTGGACGG
AAAATTCTATCCGGATCGCAGCAGAACGACTTTGGATGAGAATTGTCACT
ATATGGAAAAGTGCTGTAATATCCCCGATAAACTCCCGACTCCGAAAATT
CCAGAGGAGATGATGAGCTGCCCGTGTGGAGGACGCCATGATCTCTGGTA
CTACCTTCGACCGCTGGGATATAAACAGCAAGAGGCCAAGTTCGGGGAGT
TTCCCTGGTTGGTGGCGGTCTACGGGTCGGATACTTATCTCTGCAGTGGA
GCACTTATCACTCCGCTGGCGGTGATCACCACCGCGCACTGCGTTCAGAA
TTCGGAAATGGAGAAGGTTCGTCTGTTGGCCGGGGAATGGGATGCCGCCG
TGGAGCTGGAGCCCCAGCCGCACCAGCAAAGATCGGTTGTTGAGACATTA
GTGCATCCCAATTACACTCAAATGCCATTGGCCCACAACATAGCGATACT
TCTGGTGGACAAGGAGAAACCTTTCCAGCTGGCTCCTAATGTACAGCCCA
TTTGCTTGCCGCCTCCGCGAATAATGTACAACTACAGCCAGTGCTATGTG
TCCGGTTGGCAGAGGAGTGATTTTGGTAGAGCTGCAATCCTGCCCAAGCG
TTGGACACTCTACGTCCTACCACCCGATCAATGCANGACCAAGTTGCGAT
TGTCCCTCTTGGGGCGACGCCACGCCCCACACGATAGCCTGCTGTGTGCC
GGCGGC
BO06354.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9377-PA | 1068 | CG9377-RA | 1..811 | 17..827 | 4036 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9377-RA | 1191 | CG9377-RA | 83..922 | 17..856 | 4144 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13360170..13360793 | 856..233 | 3064 | 99.4 | Minus |
| 2L | 23513712 | 2L | 13361268..13361483 | 232..17 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:42:32 has no hits.
BO06354.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:11 Download gff for
BO06354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:02 Download gff for
BO06354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:43 Download gff for
BO06354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-RA | 73..922 | 7..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:08 Download gff for
BO06354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-RA | 73..922 | 7..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:08 Download gff for
BO06354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13360170..13360793 | 233..856 | 99 | <- | Minus |
| 2L | 13361268..13361493 | 7..232 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:43 Download gff for
BO06354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13360170..13360793 | 233..856 | 99 | <- | Minus |
| arm_2L | 13361268..13361493 | 7..232 | 98 | | Minus |
BO06354.complete Sequence
1099 bp (1099 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630361
> BO06354.complete
GAAGTTATCAGTCGACATGTGCTTCTATCGGATTGTGGTCATCTGTCTTC
TAGGCTCCCTAGTGCCCTCCATAGCGGCATCCAAAGTCTGCGGACCGGAA
AAGCATTGCGTTCCCTACGAGCAGTGCAACGAGGGCTTAATGGTGGACGG
AAAATTCTATCCGGATCGCAGCAGAACGACTTTGGATGAGAATTGTCACT
ATATGGAAAAGTGCTGTAATATCCCCGATAAACTCCCGACTCCGAAAATT
CCAGAGGAGATGATGAGCTGCCCGTGTGGAGGACGCCATGATCTCTGGTA
CTACCTTCGACCGCTGGGATATAAACAGCAAGAGGCCAAGTTCGGGGAGT
TTCCCTGGTTGGTGGCGGTCTACGGGTCGGATACTTATCTCTGCAGTGGA
GCACTTATCACTCCGCTGGCGGTGATCACCACCGCGCACTGCGTTCAGAA
TTCGGAAATGGAGAAGGTTCGTCTGTTGGCCGGGGAATGGGATGCCGCCG
TGGAGCTGGAGCCCCAGCCGCACCAGCAAAGATCGGTTGTTGAGACATTA
GTGCATCCCAATTACACTCAAATGCCATTGGCCCACAACATAGCGATACT
TCTGGTGGACAAGGAGAAACCTTTCCAGCTGGCTCCTAATGTACAGCCCA
TTTGCTTGCCGCCTCCGCGAATAATGTACAACTACAGCCAGTGCTATGTG
TCCGGTTGGCAGAGGAGTGATTTTGGTAGAGCTGCAATCCTGCCCAAGCG
TTGGACACTCTACGTCCTACCACCCGATCAATGCAGGACCAAGTTGCGAT
TGTCCCTCTTGGGGCGACGCCACGCCCACAACGATAGCCTGCTGTGTGCC
GGCGGCGACAAGGGTGACTTCGTCTGCGGTGATGTGGACATGACCGCTGT
GCCGCTGATGTGTCCTCTTTCCGGTCACGATGATCGTTTCCACCTGGCCG
GTCTTTTGACCCGCACGGCTCGCTGCGATGGCCCGCAACTTCTTGGAATT
TACACAAACGTCAAGTTGTACCGGCAGTGGATCGATTTGAAGCTAAGGGA
ACGCAATCTTGATATACGACACTACATGGTGGCAAGCTTTCTAGACCAT
BO06354.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9377-RA | 1068 | CG9377-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9377-RA | 1191 | CG9377-RA | 83..1147 | 17..1081 | 5325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13359945..13360793 | 1081..233 | 4245 | 100 | Minus |
| 2L | 23513712 | 2L | 13361268..13361483 | 232..17 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:25:38 has no hits.
BO06354.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:23 Download gff for
BO06354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-RA | 1..1068 | 17..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:40 Download gff for
BO06354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-RA | 35..1113 | 7..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:38 Download gff for
BO06354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-RA | 83..1147 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:24 Download gff for
BO06354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-RA | 35..1113 | 7..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:40 Download gff for
BO06354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9377-RA | 83..1147 | 17..1083 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:40 Download gff for
BO06354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13359942..13360793 | 233..1083 | 99 | <- | Minus |
| 2L | 13361268..13361483 | 17..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:38 Download gff for
BO06354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13359942..13360793 | 233..1083 | 99 | <- | Minus |
| arm_2L | 13361268..13361483 | 17..232 | 100 | | Minus |
BO06354.pep Sequence
Translation from 16 to 1099
> BO06354.pep
MCFYRIVVICLLGSLVPSIAASKVCGPEKHCVPYEQCNEGLMVDGKFYPD
RSRTTLDENCHYMEKCCNIPDKLPTPKIPEEMMSCPCGGRHDLWYYLRPL
GYKQQEAKFGEFPWLVAVYGSDTYLCSGALITPLAVITTAHCVQNSEMEK
VRLLAGEWDAAVELEPQPHQQRSVVETLVHPNYTQMPLAHNIAILLVDKE
KPFQLAPNVQPICLPPPRIMYNYSQCYVSGWQRSDFGRAAILPKRWTLYV
LPPDQCRTKLRLSLLGRRHAHNDSLLCAGGDKGDFVCGDVDMTAVPLMCP
LSGHDDRFHLAGLLTRTARCDGPQLLGIYTNVKLYRQWIDLKLRERNLDI
RHYMVASFLDH
BO06354.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9377-PA | 355 | CG9377-PA | 1..355 | 1..355 | 1958 | 100 | Plus |
| CG5390-PB | 406 | CG5390-PB | 71..404 | 25..353 | 543 | 35.6 | Plus |
| CG5390-PA | 406 | CG5390-PA | 71..404 | 25..353 | 543 | 35.6 | Plus |
| CG8738-PA | 459 | CG8738-PA | 117..445 | 23..340 | 477 | 33.8 | Plus |
| CG8586-PC | 444 | CG8586-PC | 105..435 | 25..344 | 440 | 31.5 | Plus |
