Clone Sequence Records
BO06355.3prime Sequence
905 bp (815 high quality bases) assembled on 2005-12-03
> BO06355.3prime
ATGGTCTAGAAAGCTTGCGAAGTTCTTTTCCGGATCCGAGCCAACCGCAT
TGCGAATCTCGTCCATGCGATCGTATGCGATTTCGGTGGCCCAGCACAGA
CGCTTCTCCAGCTCGCTGTTGCGCCGCCGCTGCTGACGCAGTGCATCCAG
TCCGCGTTCCAACTGAGTGCATGCCTGGAAGAAGGTGCTCAGCTCGGGTA
TGTCGCCGAATTCGCCGGGATGCCGACGGAATCCCTGCGTGGCGTCCGTG
GATAGCTTGTCCAGGCGATTTTGCAGGAAACGCTGGTCGAACATCATCTG
AAGCTCTGCAGTCGTCGCTTTGCCCAACTCGTTGTTGGATTCGTTTAGGT
GCAGGTCCCGTATGCGGTCCTTCAAGCCCGTGAAGCTAACCGACTCCAAT
TTCTCGCCAATGCCCTGGAAGAGTTCGTAGCTCTGCTTGAGCTCCAGCTG
CATCTTCCGGACATCTTCGTCGATGCTTTTGGCCGCTTGCGATTCAAGGA
AGTCGGCACGGGCACTGGCCTCCACGGGCGGAGCGTCATATCCTGATCTT
AGCGAATAGCTCGAGGATGTGGAGACCGGATCCGATGGCTTCTCCTGGGC
TCCACCTCCAGTTAAACGATCTTCAGATGATCTGGTACCCGACGACGAAC
TCTTTGTACTGCCAGCGGACGAGGAGGAGGCCTTACTATTGTTCTTCTTG
GAACTCCTCGATTTTGCTTTCCTTGTTTTCCTTATGGGCCCGAAAATGGG
CAGCGGATTGGGACTCAGGAGCAGTTCCTGTGACGCCTCCTTGTCGGAAT
CATCAGCAGCCTCTTGAGATAATATAGCTGTAAGCTCGTTCCGAATGCGA
TTCATGAGCTCATCGCTTTGTTTTTCCTTATCAGTTTCCATGTCGACTGA
TAACT
BO06355.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11656-PA | 876 | CG11656-RA | 1..873 | 891..19 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11656-RA | 1113 | CG11656-RA | 111..983 | 891..19 | 4365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13010164..13010956 | 811..19 | 3965 | 100 | Minus |
| 3R | 32079331 | 3R | 13010005..13010085 | 891..811 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:08:39 has no hits.
BO06355.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:12 Download gff for
BO06355.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-PA | 1..876 | 16..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:03 Download gff for
BO06355.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-PA | 1..876 | 16..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:16:05 Download gff for
BO06355.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 105..989 | 11..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:02 Download gff for
BO06355.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 105..989 | 11..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:02 Download gff for
BO06355.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13010007..13010084 | 812..889 | 100 | -> | Minus |
| 3R | 13010164..13010962 | 11..811 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:16:05 Download gff for
BO06355.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8835729..8835806 | 812..889 | 100 | -> | Minus |
| arm_3R | 8835886..8836684 | 11..811 | 99 | | Minus |
BO06355.5prime Sequence
905 bp (845 high quality bases) assembled on 2005-12-03
> BO06355.5prime
GAAGTTATCAGTCGACATGGAAACTGATAAGGAAAAACAAAGCGATGAGC
TCATGAATCGCATTCGGAACGAGCTTACAGCTATATTATCTCAAGAGGCT
GCTGATGATTCCGACAAGGAGGCGTCACAGGAACTGCTCCTGAGTCCCAA
TCCGCTGCCCATTTTCGGGCCCATAAGGAAAACAAGGAAAGCAAAATCGA
GGAGTTCCAAGAAGAACAATAGTAAGGCCTCCTCCTCGTCCGCTGGCAGT
ACAAAGAGTTCGTCGTCGGGTACCAGATCATCTGAAGATCGTTTAACTGG
AGGTGGAGCCCAGGAGAAGCCATCGGATCCGGTCTCCACATCCTCGAGCT
ATTCGCTAAGATCAGGATATGACGCTCCGCCCGTGGAGGCCAGTGCCCGT
GCCGACTTCCTTGAATCGCAAGCGGCCAAAAGCATCGACGAAGATGTCCG
GAAGATGCAGCTGGAGCTCAAGCAGAGCTACGAACTCTTCCAGGGCATTG
GCGAGAAATTGGAGTCGGTTAGCTTCACGGGCTTGAAGGACCGCATACGG
GACCTGCACCTAAACGAATCCAACAACGAGTTGGGCAAAGCGACGACTGC
AGAGCTTCAGATGATGTTCGACCAGCGTTTCCTGCAAAATCGCCTGGACA
AGCTATCCACGGACGCCACGCAGGGATTCCGTCGGCATCCCGGCGAATTC
GGCGACATACCCGAGCTGAGCACCTTCTTCCAGGCATGCACTCAGTTGGA
ACGCGGACTGGATGCACTGCGTCAGCAGCGGCGGCGCAACAGCGAGCTGG
AGAAGCGTCTGTGCTGGGCCACCGAAATCGCATACGATCGCATGGACGAG
ATTCGCAATGCGGTTGGCTCGGATCCGGAAAAGAACTTCGCAAGCTTTCT
AGACC
BO06355.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11656-PA | 876 | CG11656-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:43:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11656-RA | 1113 | CG11656-RA | 111..983 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13010164..13010956 | 97..889 | 3965 | 100 | Plus |
| 3R | 32079331 | 3R | 13010005..13010085 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:43:02 has no hits.
BO06355.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:13 Download gff for
BO06355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:04 Download gff for
BO06355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:45 Download gff for
BO06355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 105..989 | 8..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:05 Download gff for
BO06355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 105..989 | 8..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:05 Download gff for
BO06355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13010007..13010084 | 19..96 | 100 | -> | Plus |
| 3R | 13010164..13010962 | 97..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:45 Download gff for
BO06355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8835729..8835806 | 19..96 | 100 | -> | Plus |
| arm_3R | 8835886..8836684 | 97..897 | 99 | | Plus |
BO06355.complete Sequence
907 bp (907 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630362
> BO06355.complete
GAAGTTATCAGTCGACATGGAAACTGATAAGGAAAAACAAAGCGATGAGC
TCATGAATCGCATTCGGAACGAGCTTACAGCTATATTATCTCAAGAGGCT
GCTGATGATTCCGACAAGGAGGCGTCACAGGAACTGCTCCTGAGTCCCAA
TCCGCTGCCCATTTTCGGGCCCATAAGGAAAACAAGGAAAGCAAAATCGA
GGAGTTCCAAGAAGAACAATAGTAAGGCCTCCTCCTCGTCCGCTGGCAGT
ACAAAGAGTTCGTCGTCGGGTACCAGATCATCTGAAGATCGTTTAACTGG
AGGTGGAGCCCAGGAGAAGCCATCGGATCCGGTCTCCACATCCTCGAGCT
ATTCGCTAAGATCAGGATATGACGCTCCGCCCGTGGAGGCCAGTGCCCGT
GCCGACTTCCTTGAATCGCAAGCGGCCAAAAGCATCGACGAAGATGTCCG
GAAGATGCAGCTGGAGCTCAAGCAGAGCTACGAACTCTTCCAGGGCATTG
GCGAGAAATTGGAGTCGGTTAGCTTCACGGGCTTGAAGGACCGCATACGG
GACCTGCACCTAAACGAATCCAACAACGAGTTGGGCAAAGCGACGACTGC
AGAGCTTCAGATGATGTTCGACCAGCGTTTCCTGCAAAATCGCCTGGACA
AGCTATCCACGGACGCCACGCAGGGATTCCGTCGGCATCCCGGCGAATTC
GGCGACATACCCGAGCTGAGCACCTTCTTCCAGGCATGCACTCAGTTGGA
ACGCGGACTGGATGCACTGCGTCAGCAGCGGCGGCGCAACAGCGAGCTGG
AGAAGCGTCTGTGCTGGGCCACCGAAATCGCATACGATCGCATGGACGAG
ATTCGCAATGCGGTTGGCTCGGATCCGGAAAAGAACTTCGCAAGCTTTCT
AGACCAT
BO06355.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11656-RA | 876 | CG11656-PA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11656-RA | 1113 | CG11656-RA | 111..983 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13010164..13010956 | 97..889 | 3965 | 100 | Plus |
| 3R | 32079331 | 3R | 13010005..13010085 | 17..97 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:12:56 has no hits.
BO06355.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:25 Download gff for
BO06355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:41 Download gff for
BO06355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 105..989 | 8..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:46 Download gff for
BO06355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 111..983 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:25 Download gff for
BO06355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 105..989 | 8..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:05 Download gff for
BO06355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11656-RA | 111..983 | 17..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:05 Download gff for
BO06355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13010005..13010084 | 17..96 | 100 | -> | Plus |
| 3R | 13010164..13010956 | 97..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:46 Download gff for
BO06355.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8835727..8835806 | 17..96 | 100 | -> | Plus |
| arm_3R | 8835886..8836678 | 97..891 | 99 | | Plus |
BO06355.pep Sequence
Translation from 16 to 907
> BO06355.pep
METDKEKQSDELMNRIRNELTAILSQEAADDSDKEASQELLLSPNPLPIF
GPIRKTRKAKSRSSKKNNSKASSSSAGSTKSSSSGTRSSEDRLTGGGAQE
KPSDPVSTSSSYSLRSGYDAPPVEASARADFLESQAAKSIDEDVRKMQLE
LKQSYELFQGIGEKLESVSFTGLKDRIRDLHLNESNNELGKATTAELQMM
FDQRFLQNRLDKLSTDATQGFRRHPGEFGDIPELSTFFQACTQLERGLDA
LRQQRRRNSELEKRLCWATEIAYDRMDEIRNAVGSDPEKNFASFLDH
BO06355.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11656-PA | 291 | CG11656-PA | 1..291 | 1..291 | 1462 | 100 | Plus |
