Clone Sequence Records
BO06357.3prime Sequence
743 bp (742 high quality bases) assembled on 2005-12-03
> BO06357.3prime
ATGGTCTAGAAAGCTTGCGCAGTACATGTTGAGCTGGCGGAAGAAGTAGT
GGAAAATGAGCAGAACGCAGAAGGAGCTGGTCACGGGCAGACCAGCCGCC
TTGATCCATCCGAGGATGTTGAAGTCGTCCGGGTAGAACTCGAACTGCTC
CGTGGGTATCTCGCCGCAGTTGGAGATCACCACGGGTTCCACGGGGAAGT
CATCCGTATCGGTTTTTACATCCTCAATGGCATAGATGGTGTCCATTCCC
TCCAGCACCTTGCCGAAAACGGTGTGCTTTCCGTCCAGCCACTTGGCGCC
CACGGTGGTCACATAAAACTGGCAGCCATTGGTGTCCGGGCCCCGATTGG
CCATGCCCAAGTAACCGGGTCTGTTGTGCTCCACCGCCAGAGCCTTATCC
TCGTCCGGAAAGTAGTCCCCATAGATGCTAATGGAGCCAGTTCCGTCGCC
GTTCACAATGTCGCCGCCTTGGACGAGAAAGCGGTCCACCACGCGATGGA
ATCGCGAGCCCACGTAGCTGGTCCCGTTGATGCCGCGCAAGCAAATGTGC
CGGAAGTTGGCCACCGTCTTGGGAGCCAGCTTCCCGAACAGTCCAAACGT
GATCCTGCCCACCGGCTTCTTGTTGTGCTTCACATCCATGTAGATCCGAG
ACGTGACCGTGAAGCTCAGACCACTGGCCACGGCCAGAAAGGCGCTGCAC
AGGATTATCCGATTGAGCAATGACTTCATGTCGACTGATAACT
BO06357.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3966-PA | 714 | ninaA-RA | 1..711 | 729..19 | 3555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaA-RA | 871 | CG3966-RA | 60..771 | 730..19 | 3560 | 100 | Minus |
CG15824-RC | 7072 | CG15824-RC | 6371..6883 | 218..730 | 2565 | 100 | Plus |
CG15824-RC | 7072 | CG15824-RC | 6074..6274 | 19..219 | 1005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 877361..877873 | 730..218 | 2565 | 100 | Minus |
2L | 23513712 | 2L | 877970..878170 | 219..19 | 1005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:40:31 has no hits.
BO06357.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:15 Download gff for
BO06357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-PA | 1..714 | 16..729 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:08 Download gff for
BO06357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3966-PA | 1..714 | 16..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:00 Download gff for
BO06357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 60..781 | 10..730 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:57 Download gff for
BO06357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 60..781 | 10..730 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:57 Download gff for
BO06357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 877361..877871 | 220..730 | 100 | -> | Minus |
2L | 877970..878180 | 10..219 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:00 Download gff for
BO06357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 877361..877871 | 220..730 | 100 | -> | Minus |
arm_2L | 877970..878180 | 10..219 | 98 | | Minus |
BO06357.5prime Sequence
743 bp (742 high quality bases) assembled on 2005-12-03
> BO06357.5prime
GAAGTTATCAGTCGACATGAAGTCATTGCTCAATCGGATAATCCTGTGCA
GCGCCTTTCTGGCCGTGGCCAGTGGTCTGAGCTTCACGGTCACGTCTCGG
ATCTACATGGATGTGAAGCACAACAAGAAGCCGGTGGGCAGGATCACGTT
TGGACTGTTCGGGAAGCTGGCTCCCAAGACGGTGGCCAACTTCCGGCACA
TTTGCTTGCGCGGCATCAACGGGACCAGCTACGTGGGCTCGCGATTCCAT
CGCGTGGTGGACCGCTTTCTCGTCCAAGGCGGCGACATTGTGAACGGCGA
CGGAACTGGCTCCATTAGCATCTATGGGGACTACTTTCCGGACGAGGATA
AGGCTCTGGCGGTGGAGCACAACAGACCCGGTTACTTGGGCATGGCCAAT
CGGGGCCCGGACACCAATGGCTGCCAGTTTTATGTGACCACCGTGGGCGC
CAAGTGGCTGGACGGAAAGCACACCGTTTTCGGCAAGGTGCTGGAGGGAA
TGGACACCATCTATGCCATTGAGGATGTAAAAACCGATACGGATGACTTC
CCCGTGGAACCCGTGGTGATCTCCAACTGCGGCGAGATACCCACGGAGCA
GTTCGAGTTCTACCCGGACGACTTCAACATCCTCGGATGGATCAAGGCGG
CTGGTCTGCCCGTGACCAGCTCCTTCTGCGTTCTGCTCATTTTCCACTAC
TTCTTCCGCCAGCTCAACATGTACTGCGCAAGCTTTCTAGACC
BO06357.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3966-PA | 714 | ninaA-RA | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaA-RA | 871 | CG3966-RA | 60..771 | 16..727 | 3560 | 100 | Plus |
CG15824-RC | 7072 | CG15824-RC | 6371..6883 | 528..16 | 2565 | 100 | Minus |
CG15824-RC | 7072 | CG15824-RC | 6074..6274 | 727..527 | 1005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 877361..877873 | 16..528 | 2565 | 100 | Plus |
2L | 23513712 | 2L | 877970..878170 | 527..727 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:03:38 has no hits.
BO06357.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:16 Download gff for
BO06357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-PA | 1..714 | 17..730 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:09 Download gff for
BO06357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3966-PA | 1..714 | 17..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:31 Download gff for
BO06357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 60..781 | 16..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:43:47 Download gff for
BO06357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 60..781 | 16..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:47 Download gff for
BO06357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 877361..877871 | 16..526 | 100 | -> | Plus |
2L | 877970..878180 | 527..736 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:31 Download gff for
BO06357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 877970..878180 | 527..736 | 98 | | Plus |
arm_2L | 877361..877871 | 16..526 | 100 | -> | Plus |
BO06357.complete Sequence
745 bp (745 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630363
> BO06357.complete
GAAGTTATCAGTCGACATGAAGTCATTGCTCAATCGGATAATCCTGTGCA
GCGCCTTTCTGGCCGTGGCCAGTGGTCTGAGCTTCACGGTCACGTCTCGG
ATCTACATGGATGTGAAGCACAACAAGAAGCCGGTGGGCAGGATCACGTT
TGGACTGTTCGGGAAGCTGGCTCCCAAGACGGTGGCCAACTTCCGGCACA
TTTGCTTGCGCGGCATCAACGGGACCAGCTACGTGGGCTCGCGATTCCAT
CGCGTGGTGGACCGCTTTCTCGTCCAAGGCGGCGACATTGTGAACGGCGA
CGGAACTGGCTCCATTAGCATCTATGGGGACTACTTTCCGGACGAGGATA
AGGCTCTGGCGGTGGAGCACAACAGACCCGGTTACTTGGGCATGGCCAAT
CGGGGCCCGGACACCAATGGCTGCCAGTTTTATGTGACCACCGTGGGCGC
CAAGTGGCTGGACGGAAAGCACACCGTTTTCGGCAAGGTGCTGGAGGGAA
TGGACACCATCTATGCCATTGAGGATGTAAAAACCGATACGGATGACTTC
CCCGTGGAACCCGTGGTGATCTCCAACTGCGGCGAGATACCCACGGAGCA
GTTCGAGTTCTACCCGGACGACTTCAACATCCTCGGATGGATCAAGGCGG
CTGGTCTGCCCGTGACCAGCTCCTTCTGCGTTCTGCTCATTTTCCACTAC
TTCTTCCGCCAGCTCAACATGTACTGCGCAAGCTTTCTAGACCAT
BO06357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaA-RA | 714 | CG3966-PA | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaA-RA | 871 | CG3966-RA | 60..771 | 16..727 | 3560 | 100 | Plus |
CG15824-RC | 7072 | CG15824-RC | 6371..6883 | 528..16 | 2565 | 100 | Minus |
CG15824-RC | 7072 | CG15824-RC | 6074..6274 | 727..527 | 1005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:28:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 877361..877873 | 16..528 | 2565 | 100 | Plus |
2L | 23513712 | 2L | 877970..878170 | 527..727 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:28:17 has no hits.
BO06357.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:26 Download gff for
BO06357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 1..714 | 17..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:43 Download gff for
BO06357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 69..790 | 16..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:55 Download gff for
BO06357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 61..771 | 17..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:26 Download gff for
BO06357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 69..790 | 16..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:17 Download gff for
BO06357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ninaA-RA | 61..771 | 17..729 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:17 Download gff for
BO06357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 877970..878170 | 527..729 | 99 | | Plus |
2L | 877362..877871 | 17..526 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:55 Download gff for
BO06357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 877362..877871 | 17..526 | 100 | -> | Plus |
arm_2L | 877970..878170 | 527..729 | 99 | | Plus |
BO06357.pep Sequence
Translation from 16 to 745
> BO06357.pep
MKSLLNRIILCSAFLAVASGLSFTVTSRIYMDVKHNKKPVGRITFGLFGK
LAPKTVANFRHICLRGINGTSYVGSRFHRVVDRFLVQGGDIVNGDGTGSI
SIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDG
KHTVFGKVLEGMDTIYAIEDVKTDTDDFPVEPVVISNCGEIPTEQFEFYP
DDFNILGWIKAAGLPVTSSFCVLLIFHYFFRQLNMYCASFLDH
BO06357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ninaA-PA | 237 | CG3966-PA | 1..237 | 1..237 | 1269 | 100 | Plus |
CG2852-PD | 205 | CG2852-PD | 27..194 | 25..195 | 446 | 49.1 | Plus |
CG2852-PA | 205 | CG2852-PA | 27..194 | 25..195 | 446 | 49.1 | Plus |
CG17266-PB | 183 | CG17266-PB | 19..183 | 29..191 | 375 | 44.3 | Plus |
CG17266-PA | 183 | CG17266-PA | 19..183 | 29..191 | 375 | 44.3 | Plus |