Clone BO06357 Report

Search the DGRC for BO06357

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptninaA-RA
Protein status:BO06357.pep: validated full length
Sequenced Size:745

Clone Sequence Records

BO06357.3prime Sequence

743 bp (742 high quality bases) assembled on 2005-12-03

> BO06357.3prime
ATGGTCTAGAAAGCTTGCGCAGTACATGTTGAGCTGGCGGAAGAAGTAGT
GGAAAATGAGCAGAACGCAGAAGGAGCTGGTCACGGGCAGACCAGCCGCC
TTGATCCATCCGAGGATGTTGAAGTCGTCCGGGTAGAACTCGAACTGCTC
CGTGGGTATCTCGCCGCAGTTGGAGATCACCACGGGTTCCACGGGGAAGT
CATCCGTATCGGTTTTTACATCCTCAATGGCATAGATGGTGTCCATTCCC
TCCAGCACCTTGCCGAAAACGGTGTGCTTTCCGTCCAGCCACTTGGCGCC
CACGGTGGTCACATAAAACTGGCAGCCATTGGTGTCCGGGCCCCGATTGG
CCATGCCCAAGTAACCGGGTCTGTTGTGCTCCACCGCCAGAGCCTTATCC
TCGTCCGGAAAGTAGTCCCCATAGATGCTAATGGAGCCAGTTCCGTCGCC
GTTCACAATGTCGCCGCCTTGGACGAGAAAGCGGTCCACCACGCGATGGA
ATCGCGAGCCCACGTAGCTGGTCCCGTTGATGCCGCGCAAGCAAATGTGC
CGGAAGTTGGCCACCGTCTTGGGAGCCAGCTTCCCGAACAGTCCAAACGT
GATCCTGCCCACCGGCTTCTTGTTGTGCTTCACATCCATGTAGATCCGAG
ACGTGACCGTGAAGCTCAGACCACTGGCCACGGCCAGAAAGGCGCTGCAC
AGGATTATCCGATTGAGCAATGACTTCATGTCGACTGATAACT

BO06357.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3966-PA 714 ninaA-RA 1..711 729..19 3555 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
ninaA-RA 871 CG3966-RA 60..771 730..19 3560 100 Minus
CG15824-RC 7072 CG15824-RC 6371..6883 218..730 2565 100 Plus
CG15824-RC 7072 CG15824-RC 6074..6274 19..219 1005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 877361..877873 730..218 2565 100 Minus
2L 23513712 2L 877970..878170 219..19 1005 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:40:31 has no hits.

BO06357.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:15 Download gff for BO06357.3prime
Subject Subject Range Query Range Percent Splice Strand
ninaA-PA 1..714 16..729 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:08 Download gff for BO06357.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3966-PA 1..714 16..729 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:00 Download gff for BO06357.3prime
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 60..781 10..730 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:57 Download gff for BO06357.3prime
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 60..781 10..730 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:57 Download gff for BO06357.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 877361..877871 220..730 100 -> Minus
2L 877970..878180 10..219 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:00 Download gff for BO06357.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 877361..877871 220..730 100 -> Minus
arm_2L 877970..878180 10..219 98   Minus

BO06357.5prime Sequence

743 bp (742 high quality bases) assembled on 2005-12-03

> BO06357.5prime
GAAGTTATCAGTCGACATGAAGTCATTGCTCAATCGGATAATCCTGTGCA
GCGCCTTTCTGGCCGTGGCCAGTGGTCTGAGCTTCACGGTCACGTCTCGG
ATCTACATGGATGTGAAGCACAACAAGAAGCCGGTGGGCAGGATCACGTT
TGGACTGTTCGGGAAGCTGGCTCCCAAGACGGTGGCCAACTTCCGGCACA
TTTGCTTGCGCGGCATCAACGGGACCAGCTACGTGGGCTCGCGATTCCAT
CGCGTGGTGGACCGCTTTCTCGTCCAAGGCGGCGACATTGTGAACGGCGA
CGGAACTGGCTCCATTAGCATCTATGGGGACTACTTTCCGGACGAGGATA
AGGCTCTGGCGGTGGAGCACAACAGACCCGGTTACTTGGGCATGGCCAAT
CGGGGCCCGGACACCAATGGCTGCCAGTTTTATGTGACCACCGTGGGCGC
CAAGTGGCTGGACGGAAAGCACACCGTTTTCGGCAAGGTGCTGGAGGGAA
TGGACACCATCTATGCCATTGAGGATGTAAAAACCGATACGGATGACTTC
CCCGTGGAACCCGTGGTGATCTCCAACTGCGGCGAGATACCCACGGAGCA
GTTCGAGTTCTACCCGGACGACTTCAACATCCTCGGATGGATCAAGGCGG
CTGGTCTGCCCGTGACCAGCTCCTTCTGCGTTCTGCTCATTTTCCACTAC
TTCTTCCGCCAGCTCAACATGTACTGCGCAAGCTTTCTAGACC

BO06357.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3966-PA 714 ninaA-RA 1..711 17..727 3555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
ninaA-RA 871 CG3966-RA 60..771 16..727 3560 100 Plus
CG15824-RC 7072 CG15824-RC 6371..6883 528..16 2565 100 Minus
CG15824-RC 7072 CG15824-RC 6074..6274 727..527 1005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 877361..877873 16..528 2565 100 Plus
2L 23513712 2L 877970..878170 527..727 1005 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:03:38 has no hits.

BO06357.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:16 Download gff for BO06357.5prime
Subject Subject Range Query Range Percent Splice Strand
ninaA-PA 1..714 17..730 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:09 Download gff for BO06357.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3966-PA 1..714 17..730 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:31 Download gff for BO06357.5prime
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 60..781 16..736 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:43:47 Download gff for BO06357.5prime
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 60..781 16..736 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:47 Download gff for BO06357.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 877361..877871 16..526 100 -> Plus
2L 877970..878180 527..736 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:31 Download gff for BO06357.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 877970..878180 527..736 98   Plus
arm_2L 877361..877871 16..526 100 -> Plus

BO06357.complete Sequence

745 bp (745 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630363

> BO06357.complete
GAAGTTATCAGTCGACATGAAGTCATTGCTCAATCGGATAATCCTGTGCA
GCGCCTTTCTGGCCGTGGCCAGTGGTCTGAGCTTCACGGTCACGTCTCGG
ATCTACATGGATGTGAAGCACAACAAGAAGCCGGTGGGCAGGATCACGTT
TGGACTGTTCGGGAAGCTGGCTCCCAAGACGGTGGCCAACTTCCGGCACA
TTTGCTTGCGCGGCATCAACGGGACCAGCTACGTGGGCTCGCGATTCCAT
CGCGTGGTGGACCGCTTTCTCGTCCAAGGCGGCGACATTGTGAACGGCGA
CGGAACTGGCTCCATTAGCATCTATGGGGACTACTTTCCGGACGAGGATA
AGGCTCTGGCGGTGGAGCACAACAGACCCGGTTACTTGGGCATGGCCAAT
CGGGGCCCGGACACCAATGGCTGCCAGTTTTATGTGACCACCGTGGGCGC
CAAGTGGCTGGACGGAAAGCACACCGTTTTCGGCAAGGTGCTGGAGGGAA
TGGACACCATCTATGCCATTGAGGATGTAAAAACCGATACGGATGACTTC
CCCGTGGAACCCGTGGTGATCTCCAACTGCGGCGAGATACCCACGGAGCA
GTTCGAGTTCTACCCGGACGACTTCAACATCCTCGGATGGATCAAGGCGG
CTGGTCTGCCCGTGACCAGCTCCTTCTGCGTTCTGCTCATTTTCCACTAC
TTCTTCCGCCAGCTCAACATGTACTGCGCAAGCTTTCTAGACCAT

BO06357.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
ninaA-RA 714 CG3966-PA 1..711 17..727 3555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
ninaA-RA 871 CG3966-RA 60..771 16..727 3560 100 Plus
CG15824-RC 7072 CG15824-RC 6371..6883 528..16 2565 100 Minus
CG15824-RC 7072 CG15824-RC 6074..6274 727..527 1005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 877361..877873 16..528 2565 100 Plus
2L 23513712 2L 877970..878170 527..727 1005 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:28:17 has no hits.

BO06357.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:26 Download gff for BO06357.complete
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 1..714 17..730 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:43 Download gff for BO06357.complete
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 69..790 16..736 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:55 Download gff for BO06357.complete
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 61..771 17..729 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:26 Download gff for BO06357.complete
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 69..790 16..736 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:17 Download gff for BO06357.complete
Subject Subject Range Query Range Percent Splice Strand
ninaA-RA 61..771 17..729 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:17 Download gff for BO06357.complete
Subject Subject Range Query Range Percent Splice Strand
2L 877970..878170 527..729 99   Plus
2L 877362..877871 17..526 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:55 Download gff for BO06357.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 877362..877871 17..526 100 -> Plus
arm_2L 877970..878170 527..729 99   Plus

BO06357.pep Sequence

Translation from 16 to 745

> BO06357.pep
MKSLLNRIILCSAFLAVASGLSFTVTSRIYMDVKHNKKPVGRITFGLFGK
LAPKTVANFRHICLRGINGTSYVGSRFHRVVDRFLVQGGDIVNGDGTGSI
SIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDG
KHTVFGKVLEGMDTIYAIEDVKTDTDDFPVEPVVISNCGEIPTEQFEFYP
DDFNILGWIKAAGLPVTSSFCVLLIFHYFFRQLNMYCASFLDH

BO06357.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
ninaA-PA 237 CG3966-PA 1..237 1..237 1269 100 Plus
CG2852-PD 205 CG2852-PD 27..194 25..195 446 49.1 Plus
CG2852-PA 205 CG2852-PA 27..194 25..195 446 49.1 Plus
CG17266-PB 183 CG17266-PB 19..183 29..191 375 44.3 Plus
CG17266-PA 183 CG17266-PA 19..183 29..191 375 44.3 Plus