Clone BO06368 Report

Search the DGRC for BO06368

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:68
Vector:pDNR-Dual
Associated Gene/Transcriptmri-RC
Protein status:BO06368.pep: validated not full length
Sequenced Size:682

Clone Sequence Records

BO06368.3prime Sequence

680 bp (679 high quality bases) assembled on 2005-12-03

> BO06368.3prime
ATGGTCTAGAAAGCTTGCCATATTTTCATCAACTATTCCGACGGCAACAG
CGATCGCTGCCTGGTCCAACTCGTTGAGCATTACAACGCCCCCGGCCGCC
TCGTCGACGGCTACCACGACTGCTGGACCAGCCACGCCTATAGCTGCGGG
TGCGACGGCCATACCGGCAGCGAGCTCAGCGTTATTGGGATGCGGATTAG
CCACTGCTATAGGGGGAATCGGATTTCCACTTGCGTCCAATTCCAGTGGC
GGATCTGCATTTGCTTCCGCTAGATTCGTTACAGACTTGGATTTTACACA
TTGGAAATCAACATGGCGACTCTTTGCTTCCTCCTTCTCCCAGGACATGT
GGATGAAAGGTCGCTGCACATAGCTGTAGATGACTTCAGCCCGTCCACCG
GGACGCCTTCGGATCTTCTCTTTGTGGGTGGGGTATCCCTCTATGCCACA
GCGTATCTTCTTCAGACCGCGATCCTTCATCACCTGTTTGGCCACATCGC
GGTTCTCGATGTACTTGAAGAATCGGTGCATGGCAGTGCTGTGCACGGTC
TGACAATACTCCTCGCCCATCTGAGGCGGAAACTCTTCATCCCACTCGAC
CATATCGTCTTCAAGGAGCACCACAACGTGACACTCTCGATCCCCGCGCT
GCGCCGAGGCCACCATGTCGACTGATAACT

BO06368.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1216-PB 1320 mri-RB 669..1317 667..19 3245 100 Minus
CG1216-PA 1320 mri-RA 669..1317 667..19 3245 100 Minus
CG1216-PC 651 mri-RC 1..648 666..19 3240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
mri-RE 1736 CG1216-RE 964..1612 667..19 3245 100 Minus
mri-RA 1739 CG1216-RA 967..1615 667..19 3245 100 Minus
mri-RB 1647 CG1216-RB 875..1523 667..19 3245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 201441..201761 548..228 1605 100 Minus
3L 28110227 3L 201817..202028 230..19 1060 100 Minus
3L 28110227 3L 201250..201368 667..549 595 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:57:53 has no hits.

BO06368.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:34 Download gff for BO06368.3prime
Subject Subject Range Query Range Percent Splice Strand
mri-PB 669..1320 18..667 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:32 Download gff for BO06368.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1216-PA 669..1320 18..667 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:25 Download gff for BO06368.3prime
Subject Subject Range Query Range Percent Splice Strand
mri-RB 875..1523 19..667 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:34 Download gff for BO06368.3prime
Subject Subject Range Query Range Percent Splice Strand
mri-RB 875..1523 19..667 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:34 Download gff for BO06368.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 201250..201368 549..667 100 -> Minus
3L 201441..201758 231..548 100 -> Minus
3L 201817..202028 19..230 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:25 Download gff for BO06368.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 201250..201368 549..667 100 -> Minus
arm_3L 201441..201758 231..548 100 -> Minus
arm_3L 201817..202028 19..230 100   Minus

BO06368.5prime Sequence

680 bp (679 high quality bases) assembled on 2005-12-03

> BO06368.5prime
GAAGTTATCAGTCGACATGGTGGCCTCGGCGCAGCGCGGGGATCGAGAGT
GTCACGTTGTGGTGCTCCTTGAAGACGATATGGTCGAGTGGGATGAAGAG
TTTCCGCCTCAGATGGGCGAGGAGTATTGTCAGACCGTGCACAGCACTGC
CATGCACCGATTCTTCAAGTACATCGAGAACCGCGATGTGGCCAAACAGG
TGATGAAGGATCGCGGTCTGAAGAAGATACGCTGTGGCATAGAGGGATAC
CCCACCCACAAAGAGAAGATCCGAAGGCGTCCCGGTGGACGGGCTGAAGT
CATCTACAGCTATGTGCAGCGACCTTTCATCCACATGTCCTGGGAGAAGG
AGGAAGCAAAGAGTCGCCATGTTGATTTCCAATGTGTAAAATCCAAGTCT
GTAACGAATCTAGCGGAAGCAAATGCAGATCCGCCACTGGAATTGGACGC
AAGTGGAAATCCGATTCCCCCTATAGCAGTGGCTAATCCGCATCCCAATA
ACGCTGAGCTCGCTGCCGGTATGGCCGTCGCACCCGCAGCTATAGGCGTG
GCTGGTCCAGCAGTCGTGGTAGCCGTCGACGAGGCGGCCGGGGGCGTTGT
AATGCTCAACGAGTTGGACCAGGCAGCGATCGCTGTTGCCGTCGGAATAG
TTGATGAAAATATGGCAAGCTTTCTAGACC

BO06368.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1216-PB 1320 mri-RB 669..1317 16..664 3245 100 Plus
CG1216-PA 1320 mri-RA 669..1317 16..664 3245 100 Plus
CG1216-PC 651 mri-RC 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
mri-RE 1736 CG1216-RE 964..1612 16..664 3245 100 Plus
mri-RA 1739 CG1216-RA 967..1615 16..664 3245 100 Plus
mri-RB 1647 CG1216-RB 875..1523 16..664 3245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 201441..201761 135..455 1605 100 Plus
3L 28110227 3L 201817..202028 453..664 1060 100 Plus
3L 28110227 3L 201250..201368 16..134 595 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:43:48 has no hits.

BO06368.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:34 Download gff for BO06368.5prime
Subject Subject Range Query Range Percent Splice Strand
mri-PB 669..1320 16..665 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:34 Download gff for BO06368.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1216-PA 669..1320 16..665 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:53 Download gff for BO06368.5prime
Subject Subject Range Query Range Percent Splice Strand
mri-RB 875..1523 16..664 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:12 Download gff for BO06368.5prime
Subject Subject Range Query Range Percent Splice Strand
mri-RB 875..1523 16..664 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:12 Download gff for BO06368.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 201817..202028 453..664 100   Plus
3L 201250..201368 16..134 100 -> Plus
3L 201441..201758 135..452 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:53 Download gff for BO06368.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 201250..201368 16..134 100 -> Plus
arm_3L 201441..201758 135..452 100 -> Plus
arm_3L 201817..202028 453..664 100   Plus

BO06368.complete Sequence

682 bp (682 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630366

> BO06368.complete
GAAGTTATCAGTCGACATGGTGGCCTCGGCGCAGCGCGGGGATCGAGAGT
GTCACGTTGTGGTGCTCCTTGAAGACGATATGGTCGAGTGGGATGAAGAG
TTTCCGCCTCAGATGGGCGAGGAGTATTGTCAGACCGTGCACAGCACTGC
CATGCACCGATTCTTCAAGTACATCGAGAACCGCGATGTGGCCAAACAGG
TGATGAAGGATCGCGGTCTGAAGAAGATACGCTGTGGCATAGAGGGATAC
CCCACCCACAAAGAGAAGATCCGAAGGCGTCCCGGTGGACGGGCTGAAGT
CATCTACAGCTATGTGCAGCGACCTTTCATCCACATGTCCTGGGAGAAGG
AGGAAGCAAAGAGTCGCCATGTTGATTTCCAATGTGTAAAATCCAAGTCT
GTAACGAATCTAGCGGAAGCAAATGCAGATCCGCCACTGGAATTGGACGC
AAGTGGAAATCCGATTCCCCCTATAGCAGTGGCTAATCCGCATCCCAATA
ACGCTGAGCTCGCTGCCGGTATGGCCGTCGCACCCGCAGCTATAGGCGTG
GCTGGTCCAGCAGTCGTGGTAGCCGTCGACGAGGCGGCCGGGGGCGTTGT
AATGCTCAACGAGTTGGACCAGGCAGCGATCGCTGTTGCCGTCGGAATAG
TTGATGAAAATATGGCAAGCTTTCTAGACCAT

BO06368.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
mri-RE 1317 CG1216-PE 666..1314 16..664 3245 100 Plus
mri-RA 1320 CG1216-PA 669..1317 16..664 3245 100 Plus
mri-RB 1320 CG1216-PB 669..1317 16..664 3245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
mri-RE 1736 CG1216-RE 964..1612 16..664 3245 100 Plus
mri-RA 1739 CG1216-RA 967..1615 16..664 3245 100 Plus
mri-RB 1647 CG1216-RB 875..1523 16..664 3245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 201441..201761 135..455 1605 100 Plus
3L 28110227 3L 201817..202028 453..664 1060 100 Plus
3L 28110227 3L 201250..201368 16..134 595 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:54:26 has no hits.

BO06368.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:10 Download gff for BO06368.complete
Subject Subject Range Query Range Percent Splice Strand
mri-RA 669..1320 16..665 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:32 Download gff for BO06368.complete
Subject Subject Range Query Range Percent Splice Strand
mri-RC 130..778 16..664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:08 Download gff for BO06368.complete
Subject Subject Range Query Range Percent Splice Strand
mri-RB 876..1523 17..666 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:11 Download gff for BO06368.complete
Subject Subject Range Query Range Percent Splice Strand
mri-RC 130..778 16..664 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:40 Download gff for BO06368.complete
Subject Subject Range Query Range Percent Splice Strand
mri-RB 876..1523 17..666 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:40 Download gff for BO06368.complete
Subject Subject Range Query Range Percent Splice Strand
3L 201251..201368 17..134 100 -> Plus
3L 201441..201758 135..452 100 -> Plus
3L 201817..202028 453..666 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:08 Download gff for BO06368.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 201251..201368 17..134 100 -> Plus
arm_3L 201441..201758 135..452 100 -> Plus
arm_3L 201817..202028 453..666 99   Plus

BO06368.pep Sequence

Translation from 16 to 682

> BO06368.pep
MVASAQRGDRECHVVVLLEDDMVEWDEEFPPQMGEEYCQTVHSTAMHRFF
KYIENRDVAKQVMKDRGLKKIRCGIEGYPTHKEKIRRRPGGRAEVIYSYV
QRPFIHMSWEKEEAKSRHVDFQCVKSKSVTNLAEANADPPLELDASGNPI
PPIAVANPHPNNAELAAGMAVAPAAIGVAGPAVVVAVDEAAGGVVMLNEL
DQAAIAVAVGIVDENMASFLDH

BO06368.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
mri-PE 438 CG1216-PE 223..438 1..216 1126 100 Plus
mri-PA 439 CG1216-PA 224..439 1..216 1126 100 Plus
mri-PB 439 CG1216-PB 224..439 1..216 1126 100 Plus