Clone Sequence Records
BO06368.3prime Sequence
680 bp (679 high quality bases) assembled on 2005-12-03
> BO06368.3prime
ATGGTCTAGAAAGCTTGCCATATTTTCATCAACTATTCCGACGGCAACAG
CGATCGCTGCCTGGTCCAACTCGTTGAGCATTACAACGCCCCCGGCCGCC
TCGTCGACGGCTACCACGACTGCTGGACCAGCCACGCCTATAGCTGCGGG
TGCGACGGCCATACCGGCAGCGAGCTCAGCGTTATTGGGATGCGGATTAG
CCACTGCTATAGGGGGAATCGGATTTCCACTTGCGTCCAATTCCAGTGGC
GGATCTGCATTTGCTTCCGCTAGATTCGTTACAGACTTGGATTTTACACA
TTGGAAATCAACATGGCGACTCTTTGCTTCCTCCTTCTCCCAGGACATGT
GGATGAAAGGTCGCTGCACATAGCTGTAGATGACTTCAGCCCGTCCACCG
GGACGCCTTCGGATCTTCTCTTTGTGGGTGGGGTATCCCTCTATGCCACA
GCGTATCTTCTTCAGACCGCGATCCTTCATCACCTGTTTGGCCACATCGC
GGTTCTCGATGTACTTGAAGAATCGGTGCATGGCAGTGCTGTGCACGGTC
TGACAATACTCCTCGCCCATCTGAGGCGGAAACTCTTCATCCCACTCGAC
CATATCGTCTTCAAGGAGCACCACAACGTGACACTCTCGATCCCCGCGCT
GCGCCGAGGCCACCATGTCGACTGATAACT
BO06368.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1216-PB | 1320 | mri-RB | 669..1317 | 667..19 | 3245 | 100 | Minus |
CG1216-PA | 1320 | mri-RA | 669..1317 | 667..19 | 3245 | 100 | Minus |
CG1216-PC | 651 | mri-RC | 1..648 | 666..19 | 3240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mri-RE | 1736 | CG1216-RE | 964..1612 | 667..19 | 3245 | 100 | Minus |
mri-RA | 1739 | CG1216-RA | 967..1615 | 667..19 | 3245 | 100 | Minus |
mri-RB | 1647 | CG1216-RB | 875..1523 | 667..19 | 3245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:57:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 201441..201761 | 548..228 | 1605 | 100 | Minus |
3L | 28110227 | 3L | 201817..202028 | 230..19 | 1060 | 100 | Minus |
3L | 28110227 | 3L | 201250..201368 | 667..549 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:57:53 has no hits.
BO06368.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:34 Download gff for
BO06368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-PB | 669..1320 | 18..667 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:32 Download gff for
BO06368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1216-PA | 669..1320 | 18..667 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:25 Download gff for
BO06368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RB | 875..1523 | 19..667 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:34 Download gff for
BO06368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RB | 875..1523 | 19..667 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:34 Download gff for
BO06368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 201250..201368 | 549..667 | 100 | -> | Minus |
3L | 201441..201758 | 231..548 | 100 | -> | Minus |
3L | 201817..202028 | 19..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:25 Download gff for
BO06368.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 201250..201368 | 549..667 | 100 | -> | Minus |
arm_3L | 201441..201758 | 231..548 | 100 | -> | Minus |
arm_3L | 201817..202028 | 19..230 | 100 | | Minus |
BO06368.5prime Sequence
680 bp (679 high quality bases) assembled on 2005-12-03
> BO06368.5prime
GAAGTTATCAGTCGACATGGTGGCCTCGGCGCAGCGCGGGGATCGAGAGT
GTCACGTTGTGGTGCTCCTTGAAGACGATATGGTCGAGTGGGATGAAGAG
TTTCCGCCTCAGATGGGCGAGGAGTATTGTCAGACCGTGCACAGCACTGC
CATGCACCGATTCTTCAAGTACATCGAGAACCGCGATGTGGCCAAACAGG
TGATGAAGGATCGCGGTCTGAAGAAGATACGCTGTGGCATAGAGGGATAC
CCCACCCACAAAGAGAAGATCCGAAGGCGTCCCGGTGGACGGGCTGAAGT
CATCTACAGCTATGTGCAGCGACCTTTCATCCACATGTCCTGGGAGAAGG
AGGAAGCAAAGAGTCGCCATGTTGATTTCCAATGTGTAAAATCCAAGTCT
GTAACGAATCTAGCGGAAGCAAATGCAGATCCGCCACTGGAATTGGACGC
AAGTGGAAATCCGATTCCCCCTATAGCAGTGGCTAATCCGCATCCCAATA
ACGCTGAGCTCGCTGCCGGTATGGCCGTCGCACCCGCAGCTATAGGCGTG
GCTGGTCCAGCAGTCGTGGTAGCCGTCGACGAGGCGGCCGGGGGCGTTGT
AATGCTCAACGAGTTGGACCAGGCAGCGATCGCTGTTGCCGTCGGAATAG
TTGATGAAAATATGGCAAGCTTTCTAGACC
BO06368.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1216-PB | 1320 | mri-RB | 669..1317 | 16..664 | 3245 | 100 | Plus |
CG1216-PA | 1320 | mri-RA | 669..1317 | 16..664 | 3245 | 100 | Plus |
CG1216-PC | 651 | mri-RC | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mri-RE | 1736 | CG1216-RE | 964..1612 | 16..664 | 3245 | 100 | Plus |
mri-RA | 1739 | CG1216-RA | 967..1615 | 16..664 | 3245 | 100 | Plus |
mri-RB | 1647 | CG1216-RB | 875..1523 | 16..664 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 201441..201761 | 135..455 | 1605 | 100 | Plus |
3L | 28110227 | 3L | 201817..202028 | 453..664 | 1060 | 100 | Plus |
3L | 28110227 | 3L | 201250..201368 | 16..134 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:43:48 has no hits.
BO06368.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:34 Download gff for
BO06368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-PB | 669..1320 | 16..665 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:34 Download gff for
BO06368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1216-PA | 669..1320 | 16..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:53 Download gff for
BO06368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RB | 875..1523 | 16..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:12 Download gff for
BO06368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RB | 875..1523 | 16..664 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:12 Download gff for
BO06368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 201817..202028 | 453..664 | 100 | | Plus |
3L | 201250..201368 | 16..134 | 100 | -> | Plus |
3L | 201441..201758 | 135..452 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:53 Download gff for
BO06368.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 201250..201368 | 16..134 | 100 | -> | Plus |
arm_3L | 201441..201758 | 135..452 | 100 | -> | Plus |
arm_3L | 201817..202028 | 453..664 | 100 | | Plus |
BO06368.complete Sequence
682 bp (682 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630366
> BO06368.complete
GAAGTTATCAGTCGACATGGTGGCCTCGGCGCAGCGCGGGGATCGAGAGT
GTCACGTTGTGGTGCTCCTTGAAGACGATATGGTCGAGTGGGATGAAGAG
TTTCCGCCTCAGATGGGCGAGGAGTATTGTCAGACCGTGCACAGCACTGC
CATGCACCGATTCTTCAAGTACATCGAGAACCGCGATGTGGCCAAACAGG
TGATGAAGGATCGCGGTCTGAAGAAGATACGCTGTGGCATAGAGGGATAC
CCCACCCACAAAGAGAAGATCCGAAGGCGTCCCGGTGGACGGGCTGAAGT
CATCTACAGCTATGTGCAGCGACCTTTCATCCACATGTCCTGGGAGAAGG
AGGAAGCAAAGAGTCGCCATGTTGATTTCCAATGTGTAAAATCCAAGTCT
GTAACGAATCTAGCGGAAGCAAATGCAGATCCGCCACTGGAATTGGACGC
AAGTGGAAATCCGATTCCCCCTATAGCAGTGGCTAATCCGCATCCCAATA
ACGCTGAGCTCGCTGCCGGTATGGCCGTCGCACCCGCAGCTATAGGCGTG
GCTGGTCCAGCAGTCGTGGTAGCCGTCGACGAGGCGGCCGGGGGCGTTGT
AATGCTCAACGAGTTGGACCAGGCAGCGATCGCTGTTGCCGTCGGAATAG
TTGATGAAAATATGGCAAGCTTTCTAGACCAT
BO06368.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mri-RE | 1317 | CG1216-PE | 666..1314 | 16..664 | 3245 | 100 | Plus |
mri-RA | 1320 | CG1216-PA | 669..1317 | 16..664 | 3245 | 100 | Plus |
mri-RB | 1320 | CG1216-PB | 669..1317 | 16..664 | 3245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mri-RE | 1736 | CG1216-RE | 964..1612 | 16..664 | 3245 | 100 | Plus |
mri-RA | 1739 | CG1216-RA | 967..1615 | 16..664 | 3245 | 100 | Plus |
mri-RB | 1647 | CG1216-RB | 875..1523 | 16..664 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:54:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 201441..201761 | 135..455 | 1605 | 100 | Plus |
3L | 28110227 | 3L | 201817..202028 | 453..664 | 1060 | 100 | Plus |
3L | 28110227 | 3L | 201250..201368 | 16..134 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:54:26 has no hits.
BO06368.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:14:10 Download gff for
BO06368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RA | 669..1320 | 16..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:35:32 Download gff for
BO06368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RC | 130..778 | 16..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:08 Download gff for
BO06368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RB | 876..1523 | 17..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:14:11 Download gff for
BO06368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RC | 130..778 | 16..664 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:40 Download gff for
BO06368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mri-RB | 876..1523 | 17..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:40 Download gff for
BO06368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 201251..201368 | 17..134 | 100 | -> | Plus |
3L | 201441..201758 | 135..452 | 100 | -> | Plus |
3L | 201817..202028 | 453..666 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:08 Download gff for
BO06368.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 201251..201368 | 17..134 | 100 | -> | Plus |
arm_3L | 201441..201758 | 135..452 | 100 | -> | Plus |
arm_3L | 201817..202028 | 453..666 | 99 | | Plus |
BO06368.pep Sequence
Translation from 16 to 682
> BO06368.pep
MVASAQRGDRECHVVVLLEDDMVEWDEEFPPQMGEEYCQTVHSTAMHRFF
KYIENRDVAKQVMKDRGLKKIRCGIEGYPTHKEKIRRRPGGRAEVIYSYV
QRPFIHMSWEKEEAKSRHVDFQCVKSKSVTNLAEANADPPLELDASGNPI
PPIAVANPHPNNAELAAGMAVAPAAIGVAGPAVVVAVDEAAGGVVMLNEL
DQAAIAVAVGIVDENMASFLDH
BO06368.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mri-PE | 438 | CG1216-PE | 223..438 | 1..216 | 1126 | 100 | Plus |
mri-PA | 439 | CG1216-PA | 224..439 | 1..216 | 1126 | 100 | Plus |
mri-PB | 439 | CG1216-PB | 224..439 | 1..216 | 1126 | 100 | Plus |