Clone Sequence Records
BO06376.3prime Sequence
845 bp (757 high quality bases) assembled on 2005-12-03
> BO06376.3prime
ATGGTCTAGAAAGCTTGCTTTCGCCTTACGGTTCTCATCGATCCAAGGCA
AAAACGAAGACACTGATGTGTATACGGAAGGATAGGTTGTGGACAAACAG
GGTGTGTATCCCCAGGAGACGATGCCAATCAGCTCGGCTCCTCGACTGCT
GGATTGCGAGACCAGGGGGCCGCCACTGTCTCCGTTGCAGGATCCGTCGG
CTTTTCCGGGGGTGTGGGTGCATACATTGGTTTCTGCCAGCGAATTGTTG
GATGGCAACGCCGCCTTGCATTCGTTGTAGTCAACAATGATAGCGTCCAG
TTTCTGAAGGTTCAGCGGCAGCAATCCTGAGTTGTCGCGGCCCCAGCCGT
ACAGATATCCATCGCTAGTGCCTTGGAATGTCTTTGAAGGAAGACTTACT
GCGGAAACCGGATTGCTGCCATCACGGGCAACGGCATTCAGGTCAAAGGC
ATCCTCTTCCTTGAGGAGAATTAGGCCGATGTCGTTGGGTCCCACACCGC
CACCGTAGTTCTCGTGGATCACGTACTGGGCATTGGTGAACTTCCTAATC
TGAACGTTCTCCTGGTCAGTGCGGCTGTGTGCACCGGCAACTGCCTGACC
CTGATTGTAGGTCAGGCAGTGTGCGGCGGTCACAATGGTCACCTCATCGA
GCAAGCTTCCTGCACAGAAGTGCGAGTTGGATGTGGTCTGTAAGGACACA
ATATAGGGCGCCTCTCCCTTCGCCGCTTCATAGCCGTTGATGATGCGACC
TTCGGGGAATCCCGGCTGAGGGACAGAAATGGCCGAAACCGAAGCCAGAG
CCAGTGCGAATATAACCGCGAATTGTTTCATGTCGACTGATAACT
BO06376.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11912-PA | 816 | CG11912-RA | 1..813 | 831..19 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11912-RA | 898 | CG11912-RA | 27..839 | 831..19 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 318421..319233 | 19..831 | 4065 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:43:56 has no hits.
BO06376.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:45 Download gff for
BO06376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-PA | 1..816 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:49 Download gff for
BO06376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-PA | 1..816 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:56 Download gff for
BO06376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 22..839 | 19..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:13 Download gff for
BO06376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 22..839 | 19..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:13 Download gff for
BO06376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 318421..319238 | 19..836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:56 Download gff for
BO06376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 318421..319238 | 19..836 | 99 | | Plus |
BO06376.5prime Sequence
846 bp (758 high quality bases) assembled on 2005-12-03
> BO06376.5prime
GAAGTTATCAGTCGACATGAAACAATTCGCGGTTATATTCGCACTGGCTC
TGGCTTCGGTTTCGGCCATTTCTGTCCCTCAGCCGGGATTCCCCGAAGGT
CGCATCATCAACGGCTATGAAGCGGCGAAGGGAGAGGCGCCCTATATTGT
GTCCTTACAGACCACATCCAACTCGCACTTCTGTGCAGGAAGCTTGCTCG
ATGAGGTGACCATTGTGACCGCCGCACACTGCCTGACCTACAATCAGGGT
CAGGCAGTTGCCGGTGCACACAGCCGCACTGACCAGGAGAACGTTCAGAT
TAGGAAGTTCACCAATGCCCAGTACGTGATCCACGAGAACTACGGTGGCG
GTGTGGGACCCAACGACATCGGCCTAATTCTCCTCAAGGAAGAGGATGCC
TTTGACCTGAATGCCGTTGCCCGTGATGGCAGCAATCCGGTTTCCGCAGT
AAGTCTTCCTTCAAAGACATTCCAAGGCACTAGCGATGGATATCTGTACG
GCTGGGGCCGCGACAACTCAGGATTGCTGCCGCTGAACCTTCAGAAACTG
GACGCTATCATTGTTGACTACAACGAATGCAAGGCGGCGTTGCCATCCAA
CAATTCGCTGGCAGAAACCAATGTATGCACCCACACCCCCGGAAAAGCCG
ACGGATCCTGCAACGGAGACAGTGGCGGCCCCCTGGTCTCGCAATCCAGC
AGTCGAGGAGCCGAGCTGATTGGCATCGTCTCCTGGGGATACACACCCTG
TTTGTCCACAACCTATCCTTCCGTATACACATCAGTGTCTTCGTTTTTGC
CTTGGATCGATGAGAACCGTAAGGCGAAAGCAAGCTTTCTAGACCA
BO06376.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11912-PA | 816 | CG11912-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11912-RA | 898 | CG11912-RA | 27..839 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 318421..319233 | 829..17 | 4065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:56:12 has no hits.
BO06376.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:46 Download gff for
BO06376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-PA | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:50 Download gff for
BO06376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-PA | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:47 Download gff for
BO06376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 22..839 | 12..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:25 Download gff for
BO06376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 22..839 | 12..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:25 Download gff for
BO06376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 318421..319238 | 12..829 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:47 Download gff for
BO06376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 318421..319238 | 12..829 | 99 | | Minus |
BO06376.complete Sequence
847 bp (847 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630367
> BO06376.complete
GAAGTTATCAGTCGACATGAAACAATTCGCGGTTATATTCGCACTGGCTC
TGGCTTCGGTTTCGGCCATTTCTGTCCCTCAGCCGGGATTCCCCGAAGGT
CGCATCATCAACGGCTATGAAGCGGCGAAGGGAGAGGCGCCCTATATTGT
GTCCTTACAGACCACATCCAACTCGCACTTCTGTGCAGGAAGCTTGCTCG
ATGAGGTGACCATTGTGACCGCCGCACACTGCCTGACCTACAATCAGGGT
CAGGCAGTTGCCGGTGCACACAGCCGCACTGACCAGGAGAACGTTCAGAT
TAGGAAGTTCACCAATGCCCAGTACGTGATCCACGAGAACTACGGTGGCG
GTGTGGGACCCAACGACATCGGCCTAATTCTCCTCAAGGAAGAGGATGCC
TTTGACCTGAATGCCGTTGCCCGTGATGGCAGCAATCCGGTTTCCGCAGT
AAGTCTTCCTTCAAAGACATTCCAAGGCACTAGCGATGGATATCTGTACG
GCTGGGGCCGCGACAACTCAGGATTGCTGCCGCTGAACCTTCAGAAACTG
GACGCTATCATTGTTGACTACAACGAATGCAAGGCGGCGTTGCCATCCAA
CAATTCGCTGGCAGAAACCAATGTATGCACCCACACCCCCGGAAAAGCCG
ACGGATCCTGCAACGGAGACAGTGGCGGCCCCCTGGTCTCGCAATCCAGC
AGTCGAGGAGCCGAGCTGATTGGCATCGTCTCCTGGGGATACACACCCTG
TTTGTCCACAACCTATCCTTCCGTATACACATCAGTGTCTTCGTTTTTGC
CTTGGATCGATGAGAACCGTAAGGCGAAAGCAAGCTTTCTAGACCAT
BO06376.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11912-RA | 816 | CG11912-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11912-RA | 898 | CG11912-RA | 27..839 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 318421..319233 | 829..17 | 4065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:14:00 has no hits.
BO06376.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:12 Download gff for
BO06376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:23 Download gff for
BO06376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 17..834 | 12..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:05 Download gff for
BO06376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 27..839 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:13 Download gff for
BO06376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 17..834 | 12..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:44 Download gff for
BO06376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11912-RA | 27..839 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:44 Download gff for
BO06376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 318419..319233 | 17..831 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:05 Download gff for
BO06376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 318419..319233 | 17..831 | 99 | | Minus |
BO06376.pep Sequence
Translation from 16 to 847
> BO06376.pep
MKQFAVIFALALASVSAISVPQPGFPEGRIINGYEAAKGEAPYIVSLQTT
SNSHFCAGSLLDEVTIVTAAHCLTYNQGQAVAGAHSRTDQENVQIRKFTN
AQYVIHENYGGGVGPNDIGLILLKEEDAFDLNAVARDGSNPVSAVSLPSK
TFQGTSDGYLYGWGRDNSGLLPLNLQKLDAIIVDYNECKAALPSNNSLAE
TNVCTHTPGKADGSCNGDSGGPLVSQSSSRGAELIGIVSWGYTPCLSTTY
PSVYTSVSSFLPWIDENRKAKASFLDH
BO06376.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11912-PA | 271 | CG11912-PA | 1..271 | 1..271 | 1415 | 100 | Plus |
CG11911-PA | 277 | CG11911-PA | 30..272 | 23..270 | 459 | 39.9 | Plus |
Phae2-PC | 265 | CG16997-PC | 11..264 | 6..269 | 375 | 38.2 | Plus |
Phae2-PB | 265 | CG16997-PB | 11..264 | 6..269 | 375 | 38.2 | Plus |
Phae1-PB | 270 | CG16996-PB | 15..268 | 6..269 | 362 | 36.9 | Plus |