Clone BO06376 Report

Search the DGRC for BO06376

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG11912-RA
Protein status:BO06376.pep: validated full length
Sequenced Size:847

Clone Sequence Records

BO06376.3prime Sequence

845 bp (757 high quality bases) assembled on 2005-12-03

> BO06376.3prime
ATGGTCTAGAAAGCTTGCTTTCGCCTTACGGTTCTCATCGATCCAAGGCA
AAAACGAAGACACTGATGTGTATACGGAAGGATAGGTTGTGGACAAACAG
GGTGTGTATCCCCAGGAGACGATGCCAATCAGCTCGGCTCCTCGACTGCT
GGATTGCGAGACCAGGGGGCCGCCACTGTCTCCGTTGCAGGATCCGTCGG
CTTTTCCGGGGGTGTGGGTGCATACATTGGTTTCTGCCAGCGAATTGTTG
GATGGCAACGCCGCCTTGCATTCGTTGTAGTCAACAATGATAGCGTCCAG
TTTCTGAAGGTTCAGCGGCAGCAATCCTGAGTTGTCGCGGCCCCAGCCGT
ACAGATATCCATCGCTAGTGCCTTGGAATGTCTTTGAAGGAAGACTTACT
GCGGAAACCGGATTGCTGCCATCACGGGCAACGGCATTCAGGTCAAAGGC
ATCCTCTTCCTTGAGGAGAATTAGGCCGATGTCGTTGGGTCCCACACCGC
CACCGTAGTTCTCGTGGATCACGTACTGGGCATTGGTGAACTTCCTAATC
TGAACGTTCTCCTGGTCAGTGCGGCTGTGTGCACCGGCAACTGCCTGACC
CTGATTGTAGGTCAGGCAGTGTGCGGCGGTCACAATGGTCACCTCATCGA
GCAAGCTTCCTGCACAGAAGTGCGAGTTGGATGTGGTCTGTAAGGACACA
ATATAGGGCGCCTCTCCCTTCGCCGCTTCATAGCCGTTGATGATGCGACC
TTCGGGGAATCCCGGCTGAGGGACAGAAATGGCCGAAACCGAAGCCAGAG
CCAGTGCGAATATAACCGCGAATTGTTTCATGTCGACTGATAACT

BO06376.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-PA 816 CG11912-RA 1..813 831..19 4065 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-RA 898 CG11912-RA 27..839 831..19 4065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 318421..319233 19..831 4065 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:43:56 has no hits.

BO06376.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:45 Download gff for BO06376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-PA 1..816 18..831 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:49 Download gff for BO06376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-PA 1..816 18..831 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:56 Download gff for BO06376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 22..839 19..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:13 Download gff for BO06376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 22..839 19..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:13 Download gff for BO06376.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 318421..319238 19..836 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:56 Download gff for BO06376.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 318421..319238 19..836 99   Plus

BO06376.5prime Sequence

846 bp (758 high quality bases) assembled on 2005-12-03

> BO06376.5prime
GAAGTTATCAGTCGACATGAAACAATTCGCGGTTATATTCGCACTGGCTC
TGGCTTCGGTTTCGGCCATTTCTGTCCCTCAGCCGGGATTCCCCGAAGGT
CGCATCATCAACGGCTATGAAGCGGCGAAGGGAGAGGCGCCCTATATTGT
GTCCTTACAGACCACATCCAACTCGCACTTCTGTGCAGGAAGCTTGCTCG
ATGAGGTGACCATTGTGACCGCCGCACACTGCCTGACCTACAATCAGGGT
CAGGCAGTTGCCGGTGCACACAGCCGCACTGACCAGGAGAACGTTCAGAT
TAGGAAGTTCACCAATGCCCAGTACGTGATCCACGAGAACTACGGTGGCG
GTGTGGGACCCAACGACATCGGCCTAATTCTCCTCAAGGAAGAGGATGCC
TTTGACCTGAATGCCGTTGCCCGTGATGGCAGCAATCCGGTTTCCGCAGT
AAGTCTTCCTTCAAAGACATTCCAAGGCACTAGCGATGGATATCTGTACG
GCTGGGGCCGCGACAACTCAGGATTGCTGCCGCTGAACCTTCAGAAACTG
GACGCTATCATTGTTGACTACAACGAATGCAAGGCGGCGTTGCCATCCAA
CAATTCGCTGGCAGAAACCAATGTATGCACCCACACCCCCGGAAAAGCCG
ACGGATCCTGCAACGGAGACAGTGGCGGCCCCCTGGTCTCGCAATCCAGC
AGTCGAGGAGCCGAGCTGATTGGCATCGTCTCCTGGGGATACACACCCTG
TTTGTCCACAACCTATCCTTCCGTATACACATCAGTGTCTTCGTTTTTGC
CTTGGATCGATGAGAACCGTAAGGCGAAAGCAAGCTTTCTAGACCA

BO06376.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-PA 816 CG11912-RA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-RA 898 CG11912-RA 27..839 17..829 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 318421..319233 829..17 4065 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:56:12 has no hits.

BO06376.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:46 Download gff for BO06376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-PA 1..816 17..830 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:50 Download gff for BO06376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-PA 1..816 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:47 Download gff for BO06376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 22..839 12..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:25 Download gff for BO06376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 22..839 12..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:25 Download gff for BO06376.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 318421..319238 12..829 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:47 Download gff for BO06376.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 318421..319238 12..829 99   Minus

BO06376.complete Sequence

847 bp (847 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630367

> BO06376.complete
GAAGTTATCAGTCGACATGAAACAATTCGCGGTTATATTCGCACTGGCTC
TGGCTTCGGTTTCGGCCATTTCTGTCCCTCAGCCGGGATTCCCCGAAGGT
CGCATCATCAACGGCTATGAAGCGGCGAAGGGAGAGGCGCCCTATATTGT
GTCCTTACAGACCACATCCAACTCGCACTTCTGTGCAGGAAGCTTGCTCG
ATGAGGTGACCATTGTGACCGCCGCACACTGCCTGACCTACAATCAGGGT
CAGGCAGTTGCCGGTGCACACAGCCGCACTGACCAGGAGAACGTTCAGAT
TAGGAAGTTCACCAATGCCCAGTACGTGATCCACGAGAACTACGGTGGCG
GTGTGGGACCCAACGACATCGGCCTAATTCTCCTCAAGGAAGAGGATGCC
TTTGACCTGAATGCCGTTGCCCGTGATGGCAGCAATCCGGTTTCCGCAGT
AAGTCTTCCTTCAAAGACATTCCAAGGCACTAGCGATGGATATCTGTACG
GCTGGGGCCGCGACAACTCAGGATTGCTGCCGCTGAACCTTCAGAAACTG
GACGCTATCATTGTTGACTACAACGAATGCAAGGCGGCGTTGCCATCCAA
CAATTCGCTGGCAGAAACCAATGTATGCACCCACACCCCCGGAAAAGCCG
ACGGATCCTGCAACGGAGACAGTGGCGGCCCCCTGGTCTCGCAATCCAGC
AGTCGAGGAGCCGAGCTGATTGGCATCGTCTCCTGGGGATACACACCCTG
TTTGTCCACAACCTATCCTTCCGTATACACATCAGTGTCTTCGTTTTTGC
CTTGGATCGATGAGAACCGTAAGGCGAAAGCAAGCTTTCTAGACCAT

BO06376.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-RA 816 CG11912-PA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-RA 898 CG11912-RA 27..839 17..829 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 318421..319233 829..17 4065 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:14:00 has no hits.

BO06376.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:12 Download gff for BO06376.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 1..816 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:23 Download gff for BO06376.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 17..834 12..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:05 Download gff for BO06376.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 27..839 17..831 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:13 Download gff for BO06376.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 17..834 12..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:44 Download gff for BO06376.complete
Subject Subject Range Query Range Percent Splice Strand
CG11912-RA 27..839 17..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:44 Download gff for BO06376.complete
Subject Subject Range Query Range Percent Splice Strand
2L 318419..319233 17..831 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:05 Download gff for BO06376.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 318419..319233 17..831 99   Minus

BO06376.pep Sequence

Translation from 16 to 847

> BO06376.pep
MKQFAVIFALALASVSAISVPQPGFPEGRIINGYEAAKGEAPYIVSLQTT
SNSHFCAGSLLDEVTIVTAAHCLTYNQGQAVAGAHSRTDQENVQIRKFTN
AQYVIHENYGGGVGPNDIGLILLKEEDAFDLNAVARDGSNPVSAVSLPSK
TFQGTSDGYLYGWGRDNSGLLPLNLQKLDAIIVDYNECKAALPSNNSLAE
TNVCTHTPGKADGSCNGDSGGPLVSQSSSRGAELIGIVSWGYTPCLSTTY
PSVYTSVSSFLPWIDENRKAKASFLDH

BO06376.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11912-PA 271 CG11912-PA 1..271 1..271 1415 100 Plus
CG11911-PA 277 CG11911-PA 30..272 23..270 459 39.9 Plus
Phae2-PC 265 CG16997-PC 11..264 6..269 375 38.2 Plus
Phae2-PB 265 CG16997-PB 11..264 6..269 375 38.2 Plus
Phae1-PB 270 CG16996-PB 15..268 6..269 362 36.9 Plus