Clone BO06381 Report

Search the DGRC for BO06381

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG7054-RA
Protein status:BO06381.pep: validated full length
Sequenced Size:571

Clone Sequence Records

BO06381.3prime Sequence

569 bp (568 high quality bases) assembled on 2005-12-03

> BO06381.3prime
ATGGTCTAGAAAGCTTGCGCCTACGATCGTTTTATTCCGAATTGGCACAT
AGTCATCATACTGGGCCTGGTAATAATTGGCGGCAATGGGCTCGCCCAAT
CCATGTTTGGCGGCAAAGTCCCGGGCGTTGAAGTTCAAACGGCCTGTGCG
AGTAGTATTGGATATAGTGGGCGTCTCCTCGATCTTGTTCTCCTGGCGAT
AGAGGAGGAAAATATACCGATGCAGGCCAGTGTCCTTGGGCGGTCCAGAT
CCAACGTAGTCCGCTAGGGAGTGGCCACCAGAAGGATTCTCATTGCTGCC
GGGAATGTTGACCACAGACCAGTGCAGAATCTCACGGTACTTGGGATCTT
GACGAGTCGGTGCATCGGGATCCACCATGAGCAGGGTCAATAGGTTGGAC
TTTCCCTCCAGCCCAGACCAGCTGACAATCGGTTGGTCCTTCACCTGGGT
GGGGGTTAGCTCGTTGCCCTGCTTGACCTCCAAGTCATCGCCATAGATGA
CCTTAATGGTGCCAGCGGGAACCGCATCCAGCACATCGGGTACTATGTCA
TCCATGTCGACTGATAACT

BO06381.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7054-PA 540 CG7054-RA 1..537 555..19 2685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7054-RA 893 CG7054-RA 289..827 557..19 2695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22465273..22465675 557..155 2015 100 Minus
3R 32079331 3R 22465737..22465872 154..19 680 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:32:46 has no hits.

BO06381.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:53 Download gff for BO06381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-PA 1..540 18..555 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:00 Download gff for BO06381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-PA 1..540 18..555 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:37 Download gff for BO06381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 281..834 10..566 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:55 Download gff for BO06381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 281..834 10..566 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:55 Download gff for BO06381.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22465265..22465675 155..566 99 -> Minus
3R 22465737..22465879 10..154 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:37 Download gff for BO06381.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18290987..18291397 155..566 99 -> Minus
arm_3R 18291459..18291601 10..154 97   Minus

BO06381.5prime Sequence

569 bp (568 high quality bases) assembled on 2005-12-03

> BO06381.5prime
GAAGTTATCAGTCGACATGGATGACATAGTACCCGATGTGCTGGATGCGG
TTCCCGCTGGCACCATTAAGGTCATCTATGGCGATGACTTGGAGGTCAAG
CAGGGCAACGAGCTAACCCCCACCCAGGTGAAGGACCAACCGATTGTCAG
CTGGTCTGGGCTGGAGGGAAAGTCCAACCTATTGACCCTGCTCATGGTGG
ATCCCGATGCACCGACTCGTCAAGATCCCAAGTACCGTGAGATTCTGCAC
TGGTCTGTGGTCAACATTCCCGGCAGCAATGAGAATCCTTCTGGTGGCCA
CTCCCTAGCGGACTACGTTGGATCTGGACCGCCCAAGGACACTGGCCTGC
ATCGGTATATTTTCCTCCTCTATCGCCAGGAGAACAAGATCGAGGAGACG
CCCACTATATCCAATACTACTCGCACAGGCCGTTTGAACTTCAACGCCCG
GGACTTTGCCGCCAAACATGGATTGGGCGAGCCCATTGCCGCCAATTATT
ACCAGGCCCAGTATGATGACTATGTGCCAATTCGGAATAAAACGATCGTA
GGCGCAAGCTTTCTAGACC

BO06381.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7054-PA 540 CG7054-RA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7054-RA 893 CG7054-RA 289..827 15..553 2695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22465273..22465675 15..417 2015 100 Plus
3R 32079331 3R 22465737..22465872 418..553 680 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:09:40 has no hits.

BO06381.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:54 Download gff for BO06381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-PA 1..540 17..554 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:01 Download gff for BO06381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-PA 1..540 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:16:09 Download gff for BO06381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 281..834 6..562 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:31 Download gff for BO06381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 281..834 6..562 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:31 Download gff for BO06381.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22465265..22465675 6..417 99 -> Plus
3R 22465737..22465879 418..562 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:16:09 Download gff for BO06381.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18290987..18291397 6..417 99 -> Plus
arm_3R 18291459..18291601 418..562 97   Plus

BO06381.complete Sequence

571 bp (571 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630368

> BO06381.complete
GAAGTTATCAGTCGACATGGATGACATAGTACCCGATGTGCTGGATGCGG
TTCCCGCTGGCACCATTAAGGTCATCTATGGCGATGACTTGGAGGTCAAG
CAGGGCAACGAGCTAACCCCCACCCAGGTGAAGGACCAACCGATTGTCAG
CTGGTCTGGGCTGGAGGGAAAGTCCAACCTATTGACCCTGCTCATGGTGG
ATCCCGATGCACCGACTCGTCAAGATCCCAAGTACCGTGAGATTCTGCAC
TGGTCTGTGGTCAACATTCCCGGCAGCAATGAGAATCCTTCTGGTGGCCA
CTCCCTAGCGGACTACGTTGGATCTGGACCGCCCAAGGACACTGGCCTGC
ATCGGTATATTTTCCTCCTCTATCGCCAGGAGAACAAGATCGAGGAGACG
CCCACTATATCCAATACTACTCGCACAGGCCGTTTGAACTTCAACGCCCG
GGACTTTGCCGCCAAACATGGATTGGGCGAGCCCATTGCCGCCAATTATT
ACCAGGCCCAGTATGATGACTATGTGCCAATTCGGAATAAAACGATCGTA
GGCGCAAGCTTTCTAGACCAT

BO06381.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7054-RA 540 CG7054-PA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7054-RA 893 CG7054-RA 289..827 15..553 2695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22465273..22465675 15..417 2015 100 Plus
3R 32079331 3R 22465737..22465872 418..553 680 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:11:48 has no hits.

BO06381.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:13 Download gff for BO06381.complete
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 1..540 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:22 Download gff for BO06381.complete
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 353..906 6..562 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:36 Download gff for BO06381.complete
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 291..827 17..555 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:14 Download gff for BO06381.complete
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 353..906 6..562 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:58 Download gff for BO06381.complete
Subject Subject Range Query Range Percent Splice Strand
CG7054-RA 291..827 17..555 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:58 Download gff for BO06381.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22465275..22465675 17..417 100 -> Plus
3R 22465737..22465872 418..555 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:36 Download gff for BO06381.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18290997..18291397 17..417 100 -> Plus
arm_3R 18291459..18291594 418..555 98   Plus

BO06381.pep Sequence

Translation from 16 to 571

> BO06381.pep
MDDIVPDVLDAVPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLE
GKSNLLTLLMVDPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADY
VGSGPPKDTGLHRYIFLLYRQENKIEETPTISNTTRTGRLNFNARDFAAK
HGLGEPIAANYYQAQYDDYVPIRNKTIVGASFLDH

BO06381.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7054-PA 179 CG7054-PA 1..179 1..179 950 100 Plus
Pebp1-PA 176 CG18594-PA 6..175 4..177 477 49.4 Plus
CG17919-PA 202 CG17919-PA 29..199 4..177 457 50.3 Plus
CG6180-PA 257 CG6180-PA 85..255 4..177 442 52.6 Plus
CG10298-PA 187 CG10298-PA 13..185 4..179 422 48.6 Plus