Clone Sequence Records
BO06381.3prime Sequence
569 bp (568 high quality bases) assembled on 2005-12-03
> BO06381.3prime
ATGGTCTAGAAAGCTTGCGCCTACGATCGTTTTATTCCGAATTGGCACAT
AGTCATCATACTGGGCCTGGTAATAATTGGCGGCAATGGGCTCGCCCAAT
CCATGTTTGGCGGCAAAGTCCCGGGCGTTGAAGTTCAAACGGCCTGTGCG
AGTAGTATTGGATATAGTGGGCGTCTCCTCGATCTTGTTCTCCTGGCGAT
AGAGGAGGAAAATATACCGATGCAGGCCAGTGTCCTTGGGCGGTCCAGAT
CCAACGTAGTCCGCTAGGGAGTGGCCACCAGAAGGATTCTCATTGCTGCC
GGGAATGTTGACCACAGACCAGTGCAGAATCTCACGGTACTTGGGATCTT
GACGAGTCGGTGCATCGGGATCCACCATGAGCAGGGTCAATAGGTTGGAC
TTTCCCTCCAGCCCAGACCAGCTGACAATCGGTTGGTCCTTCACCTGGGT
GGGGGTTAGCTCGTTGCCCTGCTTGACCTCCAAGTCATCGCCATAGATGA
CCTTAATGGTGCCAGCGGGAACCGCATCCAGCACATCGGGTACTATGTCA
TCCATGTCGACTGATAACT
BO06381.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7054-PA | 540 | CG7054-RA | 1..537 | 555..19 | 2685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7054-RA | 893 | CG7054-RA | 289..827 | 557..19 | 2695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22465273..22465675 | 557..155 | 2015 | 100 | Minus |
3R | 32079331 | 3R | 22465737..22465872 | 154..19 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:32:46 has no hits.
BO06381.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:53 Download gff for
BO06381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-PA | 1..540 | 18..555 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:00 Download gff for
BO06381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-PA | 1..540 | 18..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:37 Download gff for
BO06381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 281..834 | 10..566 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:55 Download gff for
BO06381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 281..834 | 10..566 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:55 Download gff for
BO06381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22465265..22465675 | 155..566 | 99 | -> | Minus |
3R | 22465737..22465879 | 10..154 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:37 Download gff for
BO06381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18290987..18291397 | 155..566 | 99 | -> | Minus |
arm_3R | 18291459..18291601 | 10..154 | 97 | | Minus |
BO06381.5prime Sequence
569 bp (568 high quality bases) assembled on 2005-12-03
> BO06381.5prime
GAAGTTATCAGTCGACATGGATGACATAGTACCCGATGTGCTGGATGCGG
TTCCCGCTGGCACCATTAAGGTCATCTATGGCGATGACTTGGAGGTCAAG
CAGGGCAACGAGCTAACCCCCACCCAGGTGAAGGACCAACCGATTGTCAG
CTGGTCTGGGCTGGAGGGAAAGTCCAACCTATTGACCCTGCTCATGGTGG
ATCCCGATGCACCGACTCGTCAAGATCCCAAGTACCGTGAGATTCTGCAC
TGGTCTGTGGTCAACATTCCCGGCAGCAATGAGAATCCTTCTGGTGGCCA
CTCCCTAGCGGACTACGTTGGATCTGGACCGCCCAAGGACACTGGCCTGC
ATCGGTATATTTTCCTCCTCTATCGCCAGGAGAACAAGATCGAGGAGACG
CCCACTATATCCAATACTACTCGCACAGGCCGTTTGAACTTCAACGCCCG
GGACTTTGCCGCCAAACATGGATTGGGCGAGCCCATTGCCGCCAATTATT
ACCAGGCCCAGTATGATGACTATGTGCCAATTCGGAATAAAACGATCGTA
GGCGCAAGCTTTCTAGACC
BO06381.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7054-PA | 540 | CG7054-RA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7054-RA | 893 | CG7054-RA | 289..827 | 15..553 | 2695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22465273..22465675 | 15..417 | 2015 | 100 | Plus |
3R | 32079331 | 3R | 22465737..22465872 | 418..553 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:09:40 has no hits.
BO06381.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:54 Download gff for
BO06381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-PA | 1..540 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:01 Download gff for
BO06381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-PA | 1..540 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:16:09 Download gff for
BO06381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 281..834 | 6..562 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:31 Download gff for
BO06381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 281..834 | 6..562 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:31 Download gff for
BO06381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22465265..22465675 | 6..417 | 99 | -> | Plus |
3R | 22465737..22465879 | 418..562 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:16:09 Download gff for
BO06381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18290987..18291397 | 6..417 | 99 | -> | Plus |
arm_3R | 18291459..18291601 | 418..562 | 97 | | Plus |
BO06381.complete Sequence
571 bp (571 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630368
> BO06381.complete
GAAGTTATCAGTCGACATGGATGACATAGTACCCGATGTGCTGGATGCGG
TTCCCGCTGGCACCATTAAGGTCATCTATGGCGATGACTTGGAGGTCAAG
CAGGGCAACGAGCTAACCCCCACCCAGGTGAAGGACCAACCGATTGTCAG
CTGGTCTGGGCTGGAGGGAAAGTCCAACCTATTGACCCTGCTCATGGTGG
ATCCCGATGCACCGACTCGTCAAGATCCCAAGTACCGTGAGATTCTGCAC
TGGTCTGTGGTCAACATTCCCGGCAGCAATGAGAATCCTTCTGGTGGCCA
CTCCCTAGCGGACTACGTTGGATCTGGACCGCCCAAGGACACTGGCCTGC
ATCGGTATATTTTCCTCCTCTATCGCCAGGAGAACAAGATCGAGGAGACG
CCCACTATATCCAATACTACTCGCACAGGCCGTTTGAACTTCAACGCCCG
GGACTTTGCCGCCAAACATGGATTGGGCGAGCCCATTGCCGCCAATTATT
ACCAGGCCCAGTATGATGACTATGTGCCAATTCGGAATAAAACGATCGTA
GGCGCAAGCTTTCTAGACCAT
BO06381.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7054-RA | 540 | CG7054-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7054-RA | 893 | CG7054-RA | 289..827 | 15..553 | 2695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22465273..22465675 | 15..417 | 2015 | 100 | Plus |
3R | 32079331 | 3R | 22465737..22465872 | 418..553 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:11:48 has no hits.
BO06381.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:13 Download gff for
BO06381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 1..540 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:22 Download gff for
BO06381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 353..906 | 6..562 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:36 Download gff for
BO06381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 291..827 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:14 Download gff for
BO06381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 353..906 | 6..562 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:58 Download gff for
BO06381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7054-RA | 291..827 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:58 Download gff for
BO06381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22465275..22465675 | 17..417 | 100 | -> | Plus |
3R | 22465737..22465872 | 418..555 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:36 Download gff for
BO06381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18290997..18291397 | 17..417 | 100 | -> | Plus |
arm_3R | 18291459..18291594 | 418..555 | 98 | | Plus |
BO06381.pep Sequence
Translation from 16 to 571
> BO06381.pep
MDDIVPDVLDAVPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLE
GKSNLLTLLMVDPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADY
VGSGPPKDTGLHRYIFLLYRQENKIEETPTISNTTRTGRLNFNARDFAAK
HGLGEPIAANYYQAQYDDYVPIRNKTIVGASFLDH
BO06381.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7054-PA | 179 | CG7054-PA | 1..179 | 1..179 | 950 | 100 | Plus |
Pebp1-PA | 176 | CG18594-PA | 6..175 | 4..177 | 477 | 49.4 | Plus |
CG17919-PA | 202 | CG17919-PA | 29..199 | 4..177 | 457 | 50.3 | Plus |
CG6180-PA | 257 | CG6180-PA | 85..255 | 4..177 | 442 | 52.6 | Plus |
CG10298-PA | 187 | CG10298-PA | 13..185 | 4..179 | 422 | 48.6 | Plus |