Clone Sequence Records
BO06382.3prime Sequence
944 bp (782 high quality bases) assembled on 2005-12-03
> BO06382.3prime
ATGGTCTAGAAAGCTTGCAAAAGTGGGATATTGGGGAAGTGATGCCACTC
CACACATGTTGTTGGCGTTCCGAGCTAGCTTTAAGTAGCCACTTTCTCCC
CAATCGGTTCCATAGGAGTTCTTTATTATCCAGTAGTCTCCCCACTTCCG
ATGGGTTCCAAAGCCGACTAAAAGAACGGAGTGTGTAAGGTCCTGTCTCT
TAGATCTGCACGCCGGAATACTGAGGACTCCACCGGAGTACTGATCGAAT
TCCTCGTGGAGATGGTCAATGGACACCGCCACGGGTCCAATGTTGTAGAC
CACCTCCGCCAGTTCCCGTTCATCGTAGTTGCCGAGAGTGACGTAGCCCG
ACAATGTGCCTGCACTTCTGTCGCTTTTCCACAGGCATTCTCCTGATACA
GGCTCGTACGGATAGGATTCCTTTGTGGCGATGCCATGGTCCCTGGTGTA
GTTAAAGGCCACGCTCACCCAACCACCGCTGCAGCCGTTATTCGGATAGG
GAACACAGTCCACCAAGTGCTTGGGTGAAAGGGGAACCAGATTTCCATAC
TTCTTCGCCATATGTGCCTCAAGAACACCCGAGGTGGAGAAGGCCCAGCA
GCTCAGGCACTCGGTGCCCTGGTCTCCCACTGGCGATATATAGCCGTACT
GCCGCCAGTCGATTCCTTCGGTGATCTGGTCGTACCTCTTGTAGTTTACA
GTCTCCGTAAGTGCATTGGTACTCGTCTCCAGCGGCGCTGGGATCGACGA
GCGATAATTGAAGAGGATTCTCTGATCTGTGTCGGAGAACTTGTTTAGTC
CCATCTTGAATGCAACCTTTCCCTGCAAATAGAGCTGGTTGTGGCTTTCA
CCGCCAGGACCCTCTGTTCGTATAGCGCCCGGTGGTATTTGTCCCTGTTC
CTGTACTGCTTGTTGAACTTAGCCTTGTACTGGTCCCACTCCGT
BO06382.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11459-PA | 1011 | CG11459-RA | 178..1008 | 849..19 | 4155 | 100 | Minus |
| CG11459-PA | 1011 | CG11459-RA | 82..177 | 944..849 | 455 | 98.9 | Minus |
| CG1075-PA | 825 | CG1075-RA | 633..746 | 184..71 | 295 | 90.3 | Minus |
| CG1075-PA | 825 | CG1075-RA | 491..575 | 326..242 | 250 | 91.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11459-RB | 1413 | CG11459-RB | 118..1044 | 944..19 | 4595 | 99.8 | Minus |
| CG11459-RA | 1123 | CG11459-RA | 118..1044 | 944..19 | 4595 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6026195..6027121 | 19..944 | 4570 | 99.8 | Plus |
| 3R | 32079331 | 3R | 6028003..6028621 | 644..26 | 1380 | 82.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:10:32 has no hits.
BO06382.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:55 Download gff for
BO06382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-PA | 82..1011 | 16..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:02 Download gff for
BO06382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-PA | 82..1011 | 16..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:16:12 Download gff for
BO06382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 118..1048 | 15..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:09:46 Download gff for
BO06382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 118..1048 | 15..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:09:46 Download gff for
BO06382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6026191..6027121 | 15..944 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:16:12 Download gff for
BO06382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1851913..1852843 | 15..944 | 99 | | Plus |
BO06382.5prime Sequence
933 bp (734 high quality bases) assembled on 2005-12-03
> BO06382.5prime
GAAGTTATCAGTCGACATGGGCACGCCTCGTCTGACCGTAGTACACGGTC
TAATCCTTCTGCTCCTTGTGGAGCTAGGTTTGACTGCGGTCAGCGATACG
GAGTGGGACCAGTACAAGGCTAAGTACAACAAGCAGTACAGGAACAGGGA
CAAATACCACCGGGCGCTATACGAACAGAGGGTCCTGGCGGTGGAAAGCC
ACAACCAGCTCTATTTGCAGGGAAAGGTTGCATTCAAGATGGGACTAAAC
AAGTTCTCCGACACAGATCAGAGAATCCTCTTCAATTATCGCTCGTCGAT
CCCAGCGCCGCTGGAGACGAGTACCAATGCACTTACGGAGACTGTAAACT
ACAAGAGGTACGACCAGATCACCGAAGGAATCGACTGGCGGCAGTACGGC
TATATATCGCCAGTGGGAGACCAGGGCACCGAGTGCCTGAGCTGCTGGGC
CTTCTCCACCTCGGGTGTTCTTGAGGCACATATGGCGAAGAAGTATGGAA
ATCTGGTTCCCCTTTCACCCAAGCACTTGGTGGACTGTGTTCCCTATCCG
AATAACGGCTGCAGCGGTGGTTGGGTGAGCGTGGCCTTTAACTACACCAG
GGACCATGGCATCGCCACAAAGGAATCCTATCCGTACGAGCCTGTATCAG
GAGAATGCCTGTGGAAAAGCGACAGAAGTGCAGGCACATTGTCGGGCTAC
GTCACTCTCGGCAACTACGATGAACGGGAACTGGCGGAGGTGGTCTACAA
CATTGGACCCGTGGCGGTGTCCATTGACCATCTCCACGAGGAATTCGATC
AGTACTCCGGTGGAGTCCTCAGTATTCCGGCGTGCAGATCTAAGAGACAG
GACCTTACACACTCCGTTCTTTTAGTCGGCTTTGGGACCCATCGGAAGTG
GGGAGACTACTGGATAATAAAGAACTCCTATGG
BO06382.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11459-PA | 1011 | CG11459-RA | 1..917 | 17..933 | 4560 | 99.8 | Plus |
| CG1075-PA | 825 | CG1075-RA | 491..575 | 717..801 | 250 | 91.7 | Plus |
| CG1075-PA | 825 | CG1075-RA | 673..707 | 899..933 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11459-RB | 1413 | CG11459-RB | 37..953 | 17..933 | 4570 | 99.9 | Plus |
| CG11459-RA | 1123 | CG11459-RA | 37..953 | 17..933 | 4570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:44:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6026286..6027202 | 933..17 | 4570 | 99.9 | Minus |
| 3R | 32079331 | 3R | 6028003..6028536 | 399..933 | 1140 | 81.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:44:16 has no hits.
BO06382.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:47:56 Download gff for
BO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-PA | 1..917 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:04 Download gff for
BO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-PA | 1..917 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:57 Download gff for
BO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 26..953 | 7..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:17 Download gff for
BO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 26..953 | 7..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:17 Download gff for
BO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6026286..6027213 | 7..933 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:57 Download gff for
BO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1852008..1852935 | 7..933 | 99 | | Minus |
BO06382.complete Sequence
1042 bp (1042 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630369
> BO06382.complete
GAAGTTATCAGTCGACATGGGCACGCCTCGTCTGACCGTAGTACACGGTC
TAATCCTTCTGCTCCTTGTGGAGCTAGGTTTGACTGCGGTCAGCGATACG
GAGTGGGACCAGTACAAGGCTAAGTACAACAAGCAGTACAGGAACAGGGA
CAAATACCACCGGGCGCTATACGAACAGAGGGTCCTGGCGGTGGAAAGCC
ACAACCAGCTCTATTTGCAGGGAAAGGTTGCATTCAAGATGGGACTAAAC
AAGTTCTCCGACACAGATCAGAGAATCCTCTTCAATTATCGCTCGTCGAT
CCCAGCGCCGCTGGAGACGAGTACCAATGCACTTACGGAGACTGTAAACT
ACAAGAGGTACGACCAGATCACCGAAGGAATCGACTGGCGGCAGTACGGC
TATATATCGCCAGTGGGAGACCAGGGCACCGAGTGCCTGAGCTGCTGGGC
CTTCTCCACCTCGGGTGTTCTTGAGGCACATATGGCGAAGAAGTATGGAA
ATCTGGTTCCCCTTTCACCCAAGCACTTGGTGGACTGTGTTCCCTATCCG
AATAACGGCTGCAGCGGTGGTTGGGTGAGCGTGGCCTTTAACTACACCAG
GGACCATGGCATCGCCACAAAGGAATCCTATCCGTACGAGCCTGTATCAG
GAGAATGCCTGTGGAAAAGCGACAGAAGTGCAGGCACATTGTCGGGCTAC
GTCACTCTCGGCAACTACGATGAACGGGAACTGGCGGAGGTGGTCTACAA
CATTGGACCCGTGGCGGTGTCCATTGACCATCTCCACGAGGAATTCGATC
AGTACTCCGGTGGAGTCCTCAGTATTCCGGCGTGCAGATCTAAGAGACAG
GACCTTACACACTCCGTTCTTTTAGTCGGCTTTGGAACCCATCGGAAGTG
GGGAGACTACTGGATAATAAAGAACTCCTATGGAACCGATTGGGGAGAAA
GTGGCTACTTAAAGCTAGCTCGGAACGCCAACAACATGTGTGGAGTGGCA
TCACTTCCCCAATATCCCACTTTTGCAAGCTTTCTAGACCAT
BO06382.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11459-RB | 1011 | CG11459-PB | 1..1008 | 17..1024 | 5040 | 100 | Plus |
| CG11459-RA | 1011 | CG11459-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11459-RB | 1413 | CG11459-RB | 37..1044 | 17..1024 | 5040 | 100 | Plus |
| CG11459-RA | 1123 | CG11459-RA | 37..1044 | 17..1024 | 5040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6026195..6027202 | 1024..17 | 5040 | 100 | Minus |
| 3R | 32079331 | 3R | 6028003..6028621 | 399..1017 | 1380 | 82.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:50:42 has no hits.
BO06382.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:14 Download gff for
BO06382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 1..1011 | 17..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:24 Download gff for
BO06382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 28..1050 | 7..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:41 Download gff for
BO06382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 37..1044 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:14 Download gff for
BO06382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 28..1050 | 7..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:34 Download gff for
BO06382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 37..1044 | 17..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:34 Download gff for
BO06382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6026192..6027202 | 17..1026 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:41 Download gff for
BO06382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1851914..1852924 | 17..1026 | 99 | | Minus |
BO06382.pep Sequence
Translation from 16 to 1042
> BO06382.pep
MGTPRLTVVHGLILLLLVELGLTAVSDTEWDQYKAKYNKQYRNRDKYHRA
LYEQRVLAVESHNQLYLQGKVAFKMGLNKFSDTDQRILFNYRSSIPAPLE
TSTNALTETVNYKRYDQITEGIDWRQYGYISPVGDQGTECLSCWAFSTSG
VLEAHMAKKYGNLVPLSPKHLVDCVPYPNNGCSGGWVSVAFNYTRDHGIA
TKESYPYEPVSGECLWKSDRSAGTLSGYVTLGNYDERELAEVVYNIGPVA
VSIDHLHEEFDQYSGGVLSIPACRSKRQDLTHSVLLVGFGTHRKWGDYWI
IKNSYGTDWGESGYLKLARNANNMCGVASLPQYPTFASFLDH
BO06382.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11459-PB | 336 | CG11459-PB | 1..336 | 1..336 | 1818 | 100 | Plus |
| CG11459-PA | 336 | CG11459-PA | 1..336 | 1..336 | 1818 | 100 | Plus |
| Cp1-PC | 371 | CG6692-PC | 30..369 | 3..334 | 603 | 37.9 | Plus |
| Cp1-PA | 341 | CG6692-PA | 2..339 | 5..334 | 600 | 37.8 | Plus |
| Cp1-PE | 338 | CG6692-PE | 36..336 | 38..334 | 578 | 39.1 | Plus |
