Clone Sequence Records
BO06385.3prime Sequence
791 bp (790 high quality bases) assembled on 2005-12-03
> BO06385.3prime
ATGGTCTAGAAAGCTTGCTTGCTGCAACTGCTGTTGGATCCAATCGTAGT
TGGCCGCAATGCTAATGAATCGTTCGGGCAGCATTCCGCCGCACTCGCCA
AGGATCTGTGCACCCAGACCCACCAGCTGGCCCTGGTAGACGGCCGGTCC
TCCAATGTCCCCACTGCAGATTCCCTGACGACGGCCATGGCCCAGGCACA
GCACCTGGTCGTCCGCCACCAGCAGCTCATCCCGATTGGCCAGGGCGCAT
TCGCGTGGTGCCATCACCTCGGCGGCTCCTATTTGCAGGGTGCGATGCAT
GTTCACCTCGGACTCGGTGGTGCGGCCCCAGCCGGAGACCTCCACCTGGC
TGCCCATGGGCGGAACGTCCTGGGAGAGTGGAATGGCATTGACTGTCTCA
CTGAAAGTAATCTCCTCCTGCAGACGGAGCAGGGCGATTCCGGTCTTCAG
AGTGCTGTAGTTCGGGTTAATGGTGATCTCCTCCACGCGAATCTGCTTGC
CATTGTAGAGATCCACCGATCCTACGGTCACGGCGAACAGAACAGCAGCC
CATGGGGTATCCTTGCCGTCGGAGCAGACGCAAGAGAGGGCGGTGAGGGC
GTATCGCTGGCCAATGATCACGGCGCCGCAGTTGTAGCTTCCGCCGATGG
AGAGGGCCGCCTGGTAGGGCAGCTGGCCGAGAACGGCATCTTCTCCACCG
GCGATCCTGCCCTGCGGCTGGGCCTCCAGAACTCCGGCGGCCACAAGGAT
TAGTCCAATGGTGAGGGTCAGCTTCATGTCGACTGATAACT
BO06385.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9672-PA | 762 | CG9672-RA | 1..759 | 777..19 | 3795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9672-RA | 813 | CG9672-RA | 30..789 | 778..19 | 3800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16705995..16706529 | 19..553 | 2675 | 100 | Plus |
X | 23542271 | X | 16706621..16706845 | 554..778 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:32:54 has no hits.
BO06385.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:01 Download gff for
BO06385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-PA | 1..762 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:11 Download gff for
BO06385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-PA | 1..762 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:40 Download gff for
BO06385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 25..792 | 15..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:21 Download gff for
BO06385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 25..792 | 15..784 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:21 Download gff for
BO06385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16705991..16706529 | 15..553 | 99 | <- | Plus |
X | 16706621..16706850 | 554..784 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:40 Download gff for
BO06385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16600024..16600562 | 15..553 | 99 | <- | Plus |
arm_X | 16600654..16600883 | 554..784 | 99 | | Plus |
BO06385.5prime Sequence
791 bp (790 high quality bases) assembled on 2005-12-03
> BO06385.5prime
GAAGTTATCAGTCGACATGAAGCTGACCCTCACCATTGGACTAATCCTTG
TGGCCGCCGGAGTTCTGGAGGCCCAGCCGCAGGGCAGGATCGCCGGTGGA
GAAGATGCCGTTCTCGGCCAGCTGCCCTACCAGGCGGCCCTCTCCATCGG
CGGAAGCTACAACTGCGGCGCCGTGATCATTGGCCAGCGATACGCCCTCA
CCGCCCTCTCTTGCGTCTGCTCCGACGGCAAGGATACCCCATGGGCTGCT
GTTCTGTTCGCCGTGACCGTAGGATCGGTGGATCTCTACAATGGCAAGCA
GATTCGCGTGGAGGAGATCACCATTAACCCGAACTACAGCACTCTGAAGA
CCGGAATCGCCCTGCTCCGTCTGCAGGAGGAGATTACTTTCAGTGAGACA
GTCAATGCCATTCCACTCTCCCAGGACGTTCCGCCCATGGGCAGCCAGGT
GGAGGTCTCCGGCTGGGGCCGCACCACCGAGTCCGAGGTGAACATGCATC
GCACCCTGCAAATAGGAGCCGCCGAGGTGATGGCACCACGCGAATGCGCC
CTGGCCAATCGGGATGAGCTGCTGGTGGCGGACGACCAGGTGCTGTGCCT
GGGCCATGGCCGTCGTCAGGGAATCTGCAGTGGGGACATTGGAGGACCGG
CCGTCTACCAGGGCCAGCTGGTGGGTCTGGGTGCACAGATCCTTGGCGAG
TGCGGCGGAATGCTGCCCGAACGATTCATTAGCATTGCGGCCAACTACGA
TTGGATCCAACAGCAGTTGCAGCAAGCAAGCTTTCTAGACC
BO06385.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9672-PA | 762 | CG9672-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9672-RA | 813 | CG9672-RA | 30..789 | 16..775 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16705995..16706529 | 775..241 | 2675 | 100 | Minus |
X | 23542271 | X | 16706621..16706845 | 240..16 | 1125 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:44:51 has no hits.
BO06385.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:02 Download gff for
BO06385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:12 Download gff for
BO06385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:52 Download gff for
BO06385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 25..792 | 10..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:15:15 Download gff for
BO06385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 25..792 | 10..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:15:15 Download gff for
BO06385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16705991..16706529 | 241..779 | 99 | <- | Minus |
X | 16706621..16706850 | 10..240 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:52 Download gff for
BO06385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16600024..16600562 | 241..779 | 99 | <- | Minus |
arm_X | 16600654..16600883 | 10..240 | 99 | | Minus |
BO06385.complete Sequence
793 bp (793 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630370
> BO06385.complete
GAAGTTATCAGTCGACATGAAGCTGACCCTCACCATTGGACTAATCCTTG
TGGCCGCCGGAGTTCTGGAGGCCCAGCCGCAGGGCAGGATCGCCGGTGGA
GAAGATGCCGTTCTCGGCCAGCTGCCCTACCAGGCGGCCCTCTCCATCGG
CGGAAGCTACAACTGCGGCGCCGTGATCATTGGCCAGCGATACGCCCTCA
CCGCCCTCTCTTGCGTCTGCTCCGACGGCAAGGATACCCCATGGGCTGCT
GTTCTGTTCGCCGTGACCGTAGGATCGGTGGATCTCTACAATGGCAAGCA
GATTCGCGTGGAGGAGATCACCATTAACCCGAACTACAGCACTCTGAAGA
CCGGAATCGCCCTGCTCCGTCTGCAGGAGGAGATTACTTTCAGTGAGACA
GTCAATGCCATTCCACTCTCCCAGGACGTTCCGCCCATGGGCAGCCAGGT
GGAGGTCTCCGGCTGGGGCCGCACCACCGAGTCCGAGGTGAACATGCATC
GCACCCTGCAAATAGGAGCCGCCGAGGTGATGGCACCACGCGAATGCGCC
CTGGCCAATCGGGATGAGCTGCTGGTGGCGGACGACCAGGTGCTGTGCCT
GGGCCATGGCCGTCGTCAGGGAATCTGCAGTGGGGACATTGGAGGACCGG
CCGTCTACCAGGGCCAGCTGGTGGGTCTGGGTGCACAGATCCTTGGCGAG
TGCGGCGGAATGCTGCCCGAACGATTCATTAGCATTGCGGCCAACTACGA
TTGGATCCAACAGCAGTTGCAGCAAGCAAGCTTTCTAGACCAT
BO06385.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9672-RA | 762 | CG9672-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9672-RA | 813 | CG9672-RA | 30..789 | 16..775 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16705995..16706529 | 775..241 | 2675 | 100 | Minus |
X | 23542271 | X | 16706621..16706845 | 240..16 | 1125 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:11:52 has no hits.
BO06385.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:15 Download gff for
BO06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:26 Download gff for
BO06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 21..788 | 10..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:51 Download gff for
BO06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 31..789 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:15 Download gff for
BO06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 21..788 | 10..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:59 Download gff for
BO06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9672-RA | 31..789 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:59 Download gff for
BO06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16705993..16706529 | 241..777 | 99 | <- | Minus |
X | 16706621..16706844 | 17..240 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:51 Download gff for
BO06385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16600026..16600562 | 241..777 | 99 | <- | Minus |
arm_X | 16600654..16600877 | 17..240 | 100 | | Minus |
BO06385.pep Sequence
Translation from 16 to 793
> BO06385.pep
MKLTLTIGLILVAAGVLEAQPQGRIAGGEDAVLGQLPYQAALSIGGSYNC
GAVIIGQRYALTALSCVCSDGKDTPWAAVLFAVTVGSVDLYNGKQIRVEE
ITINPNYSTLKTGIALLRLQEEITFSETVNAIPLSQDVPPMGSQVEVSGW
GRTTESEVNMHRTLQIGAAEVMAPRECALANRDELLVADDQVLCLGHGRR
QGICSGDIGGPAVYQGQLVGLGAQILGECGGMLPERFISIAANYDWIQQQ
LQQASFLDH
BO06385.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9672-PA | 253 | CG9672-PA | 1..253 | 1..253 | 1297 | 100 | Plus |
spheroide-PA | 249 | CG9675-PA | 9..248 | 7..251 | 384 | 37.2 | Plus |
CG9676-PA | 251 | CG9676-PA | 9..248 | 9..250 | 348 | 33.3 | Plus |
CG1304-PA | 260 | CG1304-PA | 4..254 | 1..248 | 348 | 34.2 | Plus |
Ser6-PA | 259 | CG2071-PA | 30..255 | 23..249 | 341 | 34.5 | Plus |