Clone Sequence Records
BO06387.3prime Sequence
952 bp (854 high quality bases) assembled on 2005-12-03
> BO06387.3prime
ATGGTCTAGAAAGCTTGCAATGTGATACATTTTATCCAAGCATATCGTTA
TGACCTGCATATAGCGATCCCAAAGACATCTGGTTTCTTGGTCCCTTGAT
ATTTCCAGATCCAAAACGCTTTGCGTTATGGAAGCCAAAAATTTATTCAC
TTGCTCACGGTTCCAGCCATTCTGACGCCAAGGATCAATAAGCTTCTCAC
AGAGATCGACGAAAAGATCGCGCAGCTCCCGATTGCGATGCAAATTGCAG
GCGATGGTGATCAGGGCGCGCCAGTAAGAACGAAAGTTGCCATCCAGTTC
GTGAAAGGCGCGCTCGAGAAGAACGGGTTTGAGGCGCATGCAGACGAGGT
GCTTAATCTCCTTTTCCTTGTCGAGTAGACAGCGCAACTCCCGCAGGTCC
AAGAGAAACTCTTTGTCCATTTCGGTATCATAGTACTCCGGTCCAGTGTG
CTGGTAAGTATACGTCCAGTAGATCATGATGGCATGGGAGCAGGTCAACA
AATCACTGAAGCTCAGGTATTGCAACTTTTTTTTGGTGGTTTCGAAACGC
AGGCAGGCCAGGAAAACAATGCAGGCGTACTTTTTGGCTAGATCGGTGGA
TATGATGAAGTGTTGCTTGATGTTGTTGGTTAACGTGCCCGGCATTTCCT
CGACTGCCTTAAAAATGCGTTTTACGTTGTCAAATTGTCGGCGAACTGAT
TTTAGCTTGACGCACGTCTTCTCGGCCACCTCGTCGAGGTCCTTGCGGTA
GCGGGACGACAGCTTCTTGCCAAGAATTTCGCGAGCCACCACATCATCGA
TGGAATAGTACTTCTCGGTGATAAGGTCACGCATTTGTGGCTCCAGCTGG
AAGCAGGATTGCTCCATCAGTTTGGTGGGTGCGTTTAGGTATAGTTCAAT
CAGGGAATAGGTGCGGTAATGATCCAGTACATCCGATGCAATCAGGTCGC
TG
BO06387.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8660-PD | 1194 | Fibp-RD | 258..1191 | 952..19 | 4670 | 100 | Minus |
| CG8660-PB | 948 | Fibp-RB | 12..945 | 952..19 | 4670 | 100 | Minus |
| CG8660-PC | 948 | Fibp-RC | 12..945 | 952..19 | 4670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fibp-RF | 1233 | CG8660-RF | 179..1112 | 952..19 | 4670 | 100 | Minus |
| Fibp-RE | 1330 | CG8660-RE | 356..1289 | 952..19 | 4670 | 100 | Minus |
| Fibp-RC | 1274 | CG8660-RC | 300..1233 | 952..19 | 4670 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19817231..19817491 | 692..952 | 1305 | 100 | Plus |
| 3L | 28110227 | 3L | 19816345..19816532 | 94..281 | 940 | 100 | Plus |
| 3L | 28110227 | 3L | 19816871..19817003 | 451..583 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 19817060..19817168 | 584..692 | 545 | 100 | Plus |
| 3L | 28110227 | 3L | 19816720..19816823 | 350..453 | 520 | 100 | Plus |
| 3L | 28110227 | 3L | 19816206..19816283 | 19..96 | 390 | 100 | Plus |
| 3L | 28110227 | 3L | 19816593..19816661 | 281..349 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:09:23 has no hits.
BO06387.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:05 Download gff for
BO06387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fibp-PC | 12..948 | 15..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:16 Download gff for
BO06387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8660-PC | 12..948 | 15..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:53 Download gff for
BO06387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fibp-RC | 300..1237 | 14..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:17 Download gff for
BO06387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fibp-RC | 300..1237 | 14..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:10:17 Download gff for
BO06387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19816202..19816281 | 14..94 | 97 | <- | Plus |
| 3L | 19816346..19816531 | 95..280 | 100 | <- | Plus |
| 3L | 19816593..19816661 | 281..349 | 100 | <- | Plus |
| 3L | 19816720..19816820 | 350..450 | 100 | <- | Plus |
| 3L | 19816871..19817003 | 451..583 | 100 | <- | Plus |
| 3L | 19817060..19817167 | 584..691 | 100 | <- | Plus |
| 3L | 19817231..19817491 | 692..952 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:53 Download gff for
BO06387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19809302..19809381 | 14..94 | 97 | <- | Plus |
| arm_3L | 19809446..19809631 | 95..280 | 100 | <- | Plus |
| arm_3L | 19809693..19809761 | 281..349 | 100 | <- | Plus |
| arm_3L | 19809820..19809920 | 350..450 | 100 | <- | Plus |
| arm_3L | 19809971..19810103 | 451..583 | 100 | <- | Plus |
| arm_3L | 19810160..19810267 | 584..691 | 100 | <- | Plus |
| arm_3L | 19810331..19810591 | 692..952 | 100 | | Plus |
BO06387.5prime Sequence
879 bp (833 high quality bases) assembled on 2005-12-03
> BO06387.5prime
GAAGTTATCAGTCGACATGGGCGCTCCCAGCGACCTGATTGCATCGGATG
TACTGGATCATTACCGCACCTATTCCCTGATTGAACTATACCTAAACGCA
CCCACCAAACTGATGGAGCAATCCTGCTTCCAGCTGGAGCCACAAATGCG
TGACCTTATCACCGAGAAGTACTATTCCATCGATGATGTGGTGGCTCGCG
AAATTCTTGGCAAGAAGCTGTCGTCCCGCTACCGCAAGGACCTCGACGAG
GTGGCCGAGAAGACGTGCGTCAAGCTAAAATCAGTTCGCCGACAATTTGA
CAACGTAAAACGCATTTTTAAGGCAGTCGAGGAAATGCCGGGCACGTTAA
CCAACAACATCAAGCAACACTTCATCATATCCACCGATCTAGCCAAAAAG
TACGCCTGCATTGTTTTCCTGGCCTGCCTGCGTTTCGAAACCACCAAAAA
AAAGTTGCAATACCTGAGCTTCAGTGATTTGTTGACCTGCTCCCATGCCA
TCATGATCTACTGGACGTATACTTACCAGCACACTGGACCGGAGTACTAT
GATACCGAAATGGACAAAGAGTTTCTCTTGGACCTGCGGGAGTTGCGCTG
TCTACTCGACAAGGAAAAGGAGATTAAGCACCTCGTCTGCATGCGCCTCA
AACCCGTTCTTCTCGAGCGCGCCTTTCACGAACTGGATGGCAACTTTCGT
TCTTACTGGCGCGCCCTGATCACCATCGCCTGCAATTTGCATCGCAATCG
GGAGCTGCGCGATCTTTTCGTCGATCTCTGTGAGAAGCTTATTGATCCTT
GGCGTCAGAATGGCTGGAACCGTGAGCAAGTGAATAAATTTTTGGCTTCC
ATAACGCAAAGCGTTTTGGATCTGGAAAT
BO06387.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8660-PD | 1194 | Fibp-RD | 246..1109 | 16..879 | 4320 | 100 | Plus |
| CG8660-PB | 948 | Fibp-RB | 1..863 | 17..879 | 4315 | 100 | Plus |
| CG8660-PC | 948 | Fibp-RC | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fibp-RF | 1233 | CG8660-RF | 167..1030 | 16..879 | 4320 | 100 | Plus |
| Fibp-RE | 1330 | CG8660-RE | 344..1207 | 16..879 | 4320 | 100 | Plus |
| Fibp-RC | 1274 | CG8660-RC | 288..1151 | 16..879 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19817231..19817503 | 288..16 | 1365 | 100 | Minus |
| 3L | 28110227 | 3L | 19816352..19816532 | 879..699 | 905 | 100 | Minus |
| 3L | 28110227 | 3L | 19816871..19817003 | 529..397 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 19817060..19817168 | 396..288 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 19816720..19816823 | 630..527 | 520 | 100 | Minus |
| 3L | 28110227 | 3L | 19816593..19816661 | 699..631 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:11:17 has no hits.
BO06387.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:06 Download gff for
BO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8660-PA | 240..1109 | 8..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:18 Download gff for
BO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8660-PD | 240..1109 | 8..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:16:16 Download gff for
BO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fibp-RC | 282..1151 | 8..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:53 Download gff for
BO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fibp-RC | 282..1151 | 8..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:53 Download gff for
BO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19817060..19817167 | 289..396 | 100 | <- | Minus |
| 3L | 19816720..19816820 | 530..630 | 100 | <- | Minus |
| 3L | 19816871..19817003 | 397..529 | 100 | <- | Minus |
| 3L | 19816352..19816531 | 700..879 | 100 | <- | Minus |
| 3L | 19816593..19816661 | 631..699 | 100 | <- | Minus |
| 3L | 19817231..19817509 | 8..288 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:16:16 Download gff for
BO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19809452..19809631 | 700..879 | 100 | <- | Minus |
| arm_3L | 19809693..19809761 | 631..699 | 100 | <- | Minus |
| arm_3L | 19809820..19809920 | 530..630 | 100 | <- | Minus |
| arm_3L | 19809971..19810103 | 397..529 | 100 | <- | Minus |
| arm_3L | 19810160..19810267 | 289..396 | 100 | <- | Minus |
| arm_3L | 19810331..19810609 | 8..288 | 98 | | Minus |
BO06387.complete Sequence
979 bp (979 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630371
> BO06387.complete
GAAGTTATCAGTCGACATGGGCGCTCCCAGCGACCTGATTGCATCGGATG
TACTGGATCATTACCGCACCTATTCCCTGATTGAACTATACCTAAACGCA
CCCACCAAACTGATGGAGCAATCCTGCTTCCAGCTGGAGCCACAAATGCG
TGACCTTATCACCGAGAAGTACTATTCCATCGATGATGTGGTGGCTCGCG
AAATTCTTGGCAAGAAGCTGTCGTCCCGCTACCGCAAGGACCTCGACGAG
GTGGCCGAGAAGACGTGCGTCAAGCTAAAATCAGTTCGCCGACAATTTGA
CAACGTAAAACGCATTTTTAAGGCAGTCGAGGAAATGCCGGGCACGTTAA
CCAACAACATCAAGCAACACTTCATCATATCCACCGATCTAGCCAAAAAG
TACGCCTGCATTGTTTTCCTGGCCTGCCTGCGTTTCGAAACCACCAAAAA
AAAGTTGCAATACCTGAGCTTCAGTGATTTGTTGACCTGCTCCCATGCCA
TCATGATCTACTGGACGTATACTTACCAGCACACTGGACCGGAGTACTAT
GATACCGAAATGGACAAAGAGTTTCTCTTGGACCTGCGGGAGTTGCGCTG
TCTACTCGACAAGGAAAAGGAGATTAAGCACCTCGTCTGCATGCGCCTCA
AACCCGTTCTTCTCGAGCGCGCCTTTCACGAACTGGATGGCAACTTTCGT
TCTTACTGGCGCGCCCTGATCACCATCGCCTGCAATTTGCATCGCAATCG
GGAGCTGCGCGATCTTTTCGTCGATCTCTGTGAGAAGCTTATTGATCCTT
GGCGTCAGAATGGCTGGAACCGTGAGCAAGTGAATAAATTTTTGGCTTCC
ATAACGCAAAGCGTTTTGGATCTGGAAATATCAAGGGACCAAGAAACCAG
ATGTCTTTGGGATCGCTATATGCAGGTCATAACGATATGCTTGGATAAAA
TGTATCACATTGCAAGCTTTCTAGACCAT
BO06387.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fibp-RF | 948 | CG8660-PF | 1..945 | 17..961 | 4725 | 100 | Plus |
| Fibp-RE | 948 | CG8660-PE | 1..945 | 17..961 | 4725 | 100 | Plus |
| Fibp-RC | 948 | CG8660-PC | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fibp-RF | 1233 | CG8660-RF | 167..1112 | 16..961 | 4730 | 100 | Plus |
| Fibp-RE | 1330 | CG8660-RE | 344..1289 | 16..961 | 4730 | 100 | Plus |
| Fibp-RC | 1274 | CG8660-RC | 288..1233 | 16..961 | 4730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19817231..19817503 | 288..16 | 1365 | 100 | Minus |
| 3L | 28110227 | 3L | 19816345..19816532 | 886..699 | 940 | 100 | Minus |
| 3L | 28110227 | 3L | 19816871..19817003 | 529..397 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 19817060..19817168 | 396..288 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 19816720..19816823 | 630..527 | 520 | 100 | Minus |
| 3L | 28110227 | 3L | 19816206..19816283 | 961..884 | 390 | 100 | Minus |
| 3L | 28110227 | 3L | 19816593..19816661 | 699..631 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:06:58 has no hits.
BO06387.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:16 Download gff for
BO06387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fibp-RD | 240..1194 | 8..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:28 Download gff for
BO06387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fibp-RC | 459..1414 | 8..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:54 Download gff for
BO06387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fibp-RC | 289..1233 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:08 Download gff for
BO06387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fibp-RC | 289..1233 | 17..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:08 Download gff for
BO06387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19817231..19817502 | 17..288 | 100 | | Minus |
| 3L | 19816871..19817003 | 397..529 | 100 | <- | Minus |
| 3L | 19817060..19817167 | 289..396 | 100 | <- | Minus |
| 3L | 19816204..19816281 | 886..963 | 97 | <- | Minus |
| 3L | 19816346..19816531 | 700..885 | 100 | <- | Minus |
| 3L | 19816593..19816661 | 631..699 | 100 | <- | Minus |
| 3L | 19816720..19816820 | 530..630 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:54 Download gff for
BO06387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19809820..19809920 | 530..630 | 100 | <- | Minus |
| arm_3L | 19809971..19810103 | 397..529 | 100 | <- | Minus |
| arm_3L | 19810160..19810267 | 289..396 | 100 | <- | Minus |
| arm_3L | 19809304..19809381 | 886..963 | 97 | <- | Minus |
| arm_3L | 19809446..19809631 | 700..885 | 100 | <- | Minus |
| arm_3L | 19809693..19809761 | 631..699 | 100 | <- | Minus |
| arm_3L | 19810331..19810602 | 17..288 | 100 | | Minus |
BO06387.pep Sequence
Translation from 16 to 979
> BO06387.pep
MGAPSDLIASDVLDHYRTYSLIELYLNAPTKLMEQSCFQLEPQMRDLITE
KYYSIDDVVAREILGKKLSSRYRKDLDEVAEKTCVKLKSVRRQFDNVKRI
FKAVEEMPGTLTNNIKQHFIISTDLAKKYACIVFLACLRFETTKKKLQYL
SFSDLLTCSHAIMIYWTYTYQHTGPEYYDTEMDKEFLLDLRELRCLLDKE
KEIKHLVCMRLKPVLLERAFHELDGNFRSYWRALITIACNLHRNRELRDL
FVDLCEKLIDPWRQNGWNREQVNKFLASITQSVLDLEISRDQETRCLWDR
YMQVITICLDKMYHIASFLDH
BO06387.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fibp-PF | 315 | CG8660-PF | 1..315 | 1..315 | 1662 | 100 | Plus |
| Fibp-PE | 315 | CG8660-PE | 1..315 | 1..315 | 1662 | 100 | Plus |
| Fibp-PC | 315 | CG8660-PC | 1..315 | 1..315 | 1662 | 100 | Plus |
| Fibp-PB | 315 | CG8660-PB | 1..315 | 1..315 | 1662 | 100 | Plus |
| Fibp-PG | 208 | CG8660-PG | 1..205 | 1..205 | 1067 | 100 | Plus |
