Clone Sequence Records
BO06388.3prime Sequence
817 bp (800 high quality bases) assembled on 2005-12-03
> BO06388.3prime
ATGGTCTAGAAAGCTTGCTACAGCAATGCCCGTTTTGTCTGCAATGAAGC
CGAGGAAGGACGAGACCCGTGCGTATCCAGATGGTAGCCGGTATGTGCAT
TGATCCTCAGCGACGAATGAGTTGATGCCAATTTGTTGCCATTGTTGGAT
GGTTTTGTTGTACAGAATGAGAGGACCGCCAGAGTCGCCGGTGCAAGTGG
ACATGTCGCTACCATCGAATCCTTTGGCACACATGGTCGAGTCCACTACA
ACATATTTACCATAGATGGCCACACAATCCGCATTGTCAATGATCTCGAC
TTGGGCATACAAAAGGGTTTCCGAGTAGTCCAGGTACTCATCTTCCGTAT
AACCGAATCCAGCGATTGTGGCCACGCTGCCCACATAATCGATCGAGTCC
CCGTACTGGCCGACCAGTTGTATGGCCTGAATGTTGGCCGAGAATGTCAG
TGGTTCTGGCAGTTGGATCAGCGAGACATCGTTATTCAATTTGTCATTGT
AGTCCGGATGGATTATGATATTGTTGGACGTCATGTTCAGGGCATTCGCG
TTAAACAGATCCACAGTGCCGAACATCAGGAAGATGGAGCTCAGGCCATT
TGTACAATGGGCCGCCGTGAGCACCCAGGTGTCCGATATGATCGATCCTC
CGCAAAGTAGATCATCCCAGGCATCTCTCTTCAGTATGACCTGCCAGGGA
AACTGGCCCAATTTCGCATCGCTACCGGACACTATGCGATTATCTATTTT
TATCGGTGAACTGTTGGCAGGATCAAAGGGTTGGCCAACAACGGAGATGG
CAGCCAATTAGACTAGC
BO06388.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8952-PA | 831 | CG8952-RA | 39..828 | 808..19 | 3950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8952-RA | 902 | CG8952-RA | 64..862 | 817..19 | 3965 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15765510..15766235 | 19..744 | 3630 | 100 | Plus |
| X | 23542271 | X | 15766309..15766382 | 744..817 | 340 | 97.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:57:13 has no hits.
BO06388.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:06 Download gff for
BO06388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8952-PA | 30..831 | 16..817 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:19 Download gff for
BO06388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8952-PA | 30..831 | 16..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:17 Download gff for
BO06388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8952-RA | 64..866 | 15..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:21:03 Download gff for
BO06388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8952-RA | 64..866 | 15..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:21:03 Download gff for
BO06388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15765505..15766235 | 15..744 | 99 | <- | Plus |
| X | 15766310..15766382 | 745..817 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:17 Download gff for
BO06388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15659538..15660268 | 15..744 | 99 | <- | Plus |
| arm_X | 15660343..15660415 | 745..817 | 97 | | Plus |
BO06388.5prime Sequence
860 bp (754 high quality bases) assembled on 2005-12-03
> BO06388.5prime
GAAGTTATCAGTCGACATGGCGCTGAATAGCGAGCGATCCTTGATGCTAG
TCCTATTGGCTGCCATCTCCGTTGTTGGCCAACCCTTTGATCCTGCCAAC
AGTTCACCGATAAAAATAGATAATCGCATAGTGTCCGGTAGCGATGCGAA
ATTGGGCCAGTTTCCCTGGCAGGTCATACTGAAGAGAGATGCCTGGGATG
ATCTACTTTGCGGAGGATCGATCATATCGGACACCTGGGTGCTCACGGCG
GCCCATTGTACAAATGGCCTGAGCTCCATCTTCCTGATGTTCGGCACTGT
GGATCTGTTTAACGCGAATGCCCTGAACATGACGTCCAACAATATCATAA
TCCATCCGGACTACAATGACAAATTGAATAACGATGTCTCGCTGATCCAA
CTGCCAGAACCACTGACATTCTCGGCCAACATTCAGGCCATACAACTGGT
CGGCCAGTACGGGGACTCGATCGATTATGTGGGCAGCGTGGCCACAATCG
CTGGATTCGGTTATACGGAAGATGAGTACCTGGACTACTCGGAAACCCTT
TTGTATGCCCAAGTCGAGATCATTGACAATGCGGATTGTGTGGCCATCTA
TGGTAAATATGTTGTAGTGGACTCGACCATGTGTGCCAAAGGATTCGATG
GTAGCGACATGTCCACTTGCACCGGCGACTCTGGCGGTCCTCTCATTCTG
TACAACAAAACCATCCAACAATGGCAACAAATTGGCATCAACTCATTCGT
CGCTGAGGATCAATGCACATACCGGCTACCATCTGGATACGCACGGGTCT
CGTCCTTCCTCGGCTTCATTGCAGACAAAACGGGCATTGCTGTAACAAGC
TTTCTAAACC
BO06388.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8952-PA | 831 | CG8952-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8952-RA | 902 | CG8952-RA | 32..862 | 14..844 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15765510..15766235 | 844..119 | 3630 | 100 | Minus |
| X | 23542271 | X | 15766309..15766414 | 119..14 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:33:05 has no hits.
BO06388.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:07 Download gff for
BO06388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8952-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:20 Download gff for
BO06388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8952-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:41 Download gff for
BO06388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8952-RA | 29..866 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:44 Download gff for
BO06388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8952-RA | 29..866 | 9..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:44 Download gff for
BO06388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15765506..15766235 | 119..848 | 99 | <- | Minus |
| X | 15766310..15766417 | 9..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:41 Download gff for
BO06388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15659539..15660268 | 119..848 | 99 | <- | Minus |
| arm_X | 15660343..15660450 | 9..118 | 97 | | Minus |
BO06388.complete Sequence
862 bp (862 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630372
> BO06388.complete
GAAGTTATCAGTCGACATGGCGCTGAATAGCGAGCGATCCTTGATGCTAG
TCCTATTGGCTGCCATCTCCGTTGTTGGCCAACCCTTTGATCCTGCCAAC
AGTTCACCGATAAAAATAGATAATCGCATAGTGTCCGGTAGCGATGCGAA
ATTGGGCCAGTTTCCCTGGCAGGTCATACTGAAGAGAGATGCCTGGGATG
ATCTACTTTGCGGAGGATCGATCATATCGGACACCTGGGTGCTCACGGCG
GCCCATTGTACAAATGGCCTGAGCTCCATCTTCCTGATGTTCGGCACTGT
GGATCTGTTTAACGCGAATGCCCTGAACATGACGTCCAACAATATCATAA
TCCATCCGGACTACAATGACAAATTGAATAACGATGTCTCGCTGATCCAA
CTGCCAGAACCACTGACATTCTCGGCCAACATTCAGGCCATACAACTGGT
CGGCCAGTACGGGGACTCGATCGATTATGTGGGCAGCGTGGCCACAATCG
CTGGATTCGGTTATACGGAAGATGAGTACCTGGACTACTCGGAAACCCTT
TTGTATGCCCAAGTCGAGATCATTGACAATGCGGATTGTGTGGCCATCTA
TGGTAAATATGTTGTAGTGGACTCGACCATGTGTGCCAAAGGATTCGATG
GTAGCGACATGTCCACTTGCACCGGCGACTCTGGCGGTCCTCTCATTCTG
TACAACAAAACCATCCAACAATGGCAACAAATTGGCATCAACTCATTCGT
CGCTGAGGATCAATGCACATACCGGCTACCATCTGGATACGCACGGGTCT
CGTCCTTCCTCGGCTTCATTGCAGACAAAACGGGCATTGCTGTAGCAAGC
TTTCTAGACCAT
BO06388.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8952-RA | 831 | CG8952-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8952-RA | 902 | CG8952-RA | 32..862 | 14..844 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15765510..15766235 | 844..119 | 3630 | 100 | Minus |
| X | 23542271 | X | 15766309..15766414 | 119..14 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:45:52 has no hits.
BO06388.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:17 Download gff for
BO06388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8952-RA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:29 Download gff for
BO06388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8952-RA | 13..850 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:17 Download gff for
BO06388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8952-RA | 35..862 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:17 Download gff for
BO06388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8952-RA | 13..850 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:58 Download gff for
BO06388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8952-RA | 35..862 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:58 Download gff for
BO06388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15765507..15766235 | 119..846 | 99 | <- | Minus |
| X | 15766310..15766411 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:17 Download gff for
BO06388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15659540..15660268 | 119..846 | 99 | <- | Minus |
| arm_X | 15660343..15660444 | 17..118 | 100 | | Minus |
BO06388.pep Sequence
Translation from 16 to 862
> BO06388.pep
MALNSERSLMLVLLAAISVVGQPFDPANSSPIKIDNRIVSGSDAKLGQFP
WQVILKRDAWDDLLCGGSIISDTWVLTAAHCTNGLSSIFLMFGTVDLFNA
NALNMTSNNIIIHPDYNDKLNNDVSLIQLPEPLTFSANIQAIQLVGQYGD
SIDYVGSVATIAGFGYTEDEYLDYSETLLYAQVEIIDNADCVAIYGKYVV
VDSTMCAKGFDGSDMSTCTGDSGGPLILYNKTIQQWQQIGINSFVAEDQC
TYRLPSGYARVSSFLGFIADKTGIAVASFLDH
BO06388.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8952-PA | 276 | CG8952-PA | 1..276 | 1..276 | 1431 | 100 | Plus |
| Jon65Aiv-PA | 271 | CG6467-PA | 34..271 | 34..274 | 426 | 40.8 | Plus |
| CG10477-PB | 272 | CG10477-PB | 6..270 | 12..274 | 418 | 37.6 | Plus |
| CG10477-PA | 272 | CG10477-PA | 6..270 | 12..274 | 418 | 37.6 | Plus |
| Jon65Aiii-PA | 274 | CG6483-PA | 36..273 | 34..275 | 390 | 36.7 | Plus |
