Clone Sequence Records
BO06389.3prime Sequence
860 bp (803 high quality bases) assembled on 2005-12-03
> BO06389.3prime
ATGGTCTAGAAAGCTTGCGAATGTCTTCTTGGAAATGACAACAATTAAAT
CGATTAACCAATAGAACGACTGGTGGAGATCACCCTCGCACAAGTACGGC
GCCTTGGTCCATGCCTCCACGCGGTAGCCACAGTTCTCCAGCAGCTCCAT
AAACCTGGCCGCCTCCTCCTCGAACGACGCCTGTCGCCCGTTGTTCTCCA
GCAGCGGGCGCAGCGGCAGATGCGAGGTATTCGTCTCCACGTAGTGCATG
TAGGGAAGTACTAAGGCCACAACTGCTCGACCATTGGGAGCTAGTGCCAG
GTGAATGTCCTCGAGCAGCTTGAATGAATCGAAGCAGCGGTCCAATACGT
TGAGGCACAGAATCAATTCCAGGTTCTGCAGACCGTCTATCTCGGTGATT
ACGTTGAAGTTCAGCTTCTTCAGCCGATCGCGCATGGTCCAACTGGCCTC
GGTGGCGAAGACCCGCAGCCCGGCACTTCCGCTCAGCTCGGAAACGGTGT
TGGCCACGCGCAGCGAAATCTCACCGTCCCCGGCTCCGATATCCAGCAAC
GTGACAGGTTCTTGACCGCTGGCAGGCTGAAAGCCGCCTGCTACTAGCAG
CTTGCGAAACTGTTCCTCGGACAGTATGAACATGGAGCCGCGCTTCAGGA
ACCCGTTGATGTCCGTCTGGGTCATGAAGAACTGCAGGATTGAGCGAGCC
AGGGCGTGCCACAAGTGGGTCCAGATGTTTGCCGAAAGCGCCTTGGTGCG
CTCCAGCCAGCTCACGGTGGTGGCATCCGGCTCGAGCGGCACGAACTTGG
ACTGGAATCTCGGCGGCAGCTCGTGGTTCAGGCAGTACCACTTCCGAGTG
TCTATGTCCT
BO06389.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5339-PA | 918 | CG5339-RA | 74..915 | 860..19 | 4210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5339-RA | 1239 | CG5339-RA | 173..1014 | 860..19 | 4210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23897121..23897657 | 19..555 | 2685 | 100 | Plus |
2R | 25286936 | 2R | 23897713..23898001 | 554..842 | 1445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:08:30 has no hits.
BO06389.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:08 Download gff for
BO06389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-PA | 74..918 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:22 Download gff for
BO06389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-PA | 74..918 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:33 Download gff for
BO06389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 173..1014 | 19..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:00 Download gff for
BO06389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 173..1014 | 19..860 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:00 Download gff for
BO06389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23897121..23897657 | 19..555 | 100 | <- | Plus |
2R | 23897715..23897999 | 556..840 | 100 | <- | Plus |
2R | 23898055..23898074 | 841..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:33 Download gff for
BO06389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19784644..19785180 | 19..555 | 100 | <- | Plus |
arm_2R | 19785238..19785522 | 556..840 | 100 | <- | Plus |
arm_2R | 19785578..19785597 | 841..860 | 100 | | Plus |
BO06389.5prime Sequence
860 bp (751 high quality bases) assembled on 2005-12-03
> BO06389.5prime
GAAGTTATCAGTCGACATGGCTGTGTATCGTCCCCGCGGCACCCTGGCCA
GGGTAATCCACGCCAAATTCCACAACGACAACTCTCTGGAGGACATAGAC
ACTCGGAAGTGGTACTGCCTGAACCACGAGCTGCCGCCGAGATTCCAGTC
CAAGTTCGTGCCGCTCGAGCCGGATGCCACCACCGTGAGCTGGCTGGAGC
GCACCAAGGCGCTTTCGGCAAACATCTGGACCCACTTGTGGCACGCCCTG
GCTCGCTCAATCCTGCAGTTCTTCATGACCCAGACGGACATCAACGGGTT
CCTGAAGCGCGGCTCCATGTTCATACTGTCCGAGGAACAGTTTCGCAAGC
TGCTAGTAGCAGGCGGCTTTCAGCCTGCCAGCGGTCAAGAACCTGTCACG
TTGCTGGATATCGGAGCCGGGGACGGTGAGATTTCGCTGCGCGTGGCCAA
CACCGTTTCCGAGCTGAGCGGAAGTGCCGGGCTGCGGGTCTTCGCCACCG
AGGCCAGTTGGACCATGCGCGATCGGCTGAAGAAGCTGAACTTCAACGTA
ATCACCGAGATAGACGGTCTGCAGAACCTGGAATTGATTCTGTGCCTCAA
CGTATTGGACCGCTGCTTCGATTCATTCAAGCTGCTCGAGGACATTCACC
TGGCACTAGCTCCCAATGGTCGAGCAGTTGTGGCCTTAGTACTTCCCTAC
ATGCACTACGTGGAGACGAATACCTCGCATCTGCCGCTGCGCCCGCTGCT
GGAGACAACGGGCGACAGGCGTCGTTCGAGGAGGAGGCGGCCAGGTTTAT
GGAGCTGCTGGAGAACTGTGGCTACCGCGTGGAGGCATGGACCAAGGCGC
CGTACTTGTG
BO06389.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5339-PA | 918 | CG5339-RA | 1..739 | 17..755 | 3695 | 100 | Plus |
CG5339-PA | 918 | CG5339-RA | 740..845 | 755..860 | 530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5339-RA | 1239 | CG5339-RA | 99..944 | 16..860 | 4205 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23897191..23897657 | 860..395 | 2285 | 99.8 | Minus |
2R | 25286936 | 2R | 23897713..23898001 | 396..108 | 1445 | 100 | Minus |
2R | 25286936 | 2R | 23898055..23898148 | 109..16 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:44:37 has no hits.
BO06389.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:09 Download gff for
BO06389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-PA | 1..845 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:23 Download gff for
BO06389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-PA | 1..845 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:59 Download gff for
BO06389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 91..944 | 8..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:20 Download gff for
BO06389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 91..944 | 8..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:20 Download gff for
BO06389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23897191..23897657 | 395..860 | 99 | <- | Minus |
2R | 23897715..23897999 | 110..394 | 100 | <- | Minus |
2R | 23898055..23898156 | 8..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:59 Download gff for
BO06389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19784714..19785180 | 395..860 | 99 | <- | Minus |
arm_2R | 19785238..19785522 | 110..394 | 100 | <- | Minus |
arm_2R | 19785578..19785679 | 8..109 | 96 | | Minus |
BO06389.complete Sequence
949 bp (949 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630373
> BO06389.complete
GAAGTTATCAGTCGACATGGCTGTGTATCGTCCCCGCGGCACCCTGGCCA
GGGTAATCCACGCCAAATTCCACAACGACAACTCTCTGGAGGACATAGAC
ACTCGGAAGTGGTACTGCCTGAACCACGAGCTGCCGCCGAGATTCCAGTC
CAAGTTCGTGCCGCTCGAGCCGGATGCCACCACCGTGAGCTGGCTGGAGC
GCACCAAGGCGCTTTCGGCAAACATCTGGACCCACTTGTGGCACGCCCTG
GCTCGCTCAATCCTGCAGTTCTTCATGACCCAGACGGACATCAACGGGTT
CCTGAAGCGCGGCTCCATGTTCATACTGTCCGAGGAACAGTTTCGCAAGC
TGCTAGTAGCAGGCGGCTTTCAGCCTGCCAGCGGTCAAGAACCTGTCACG
TTGCTGGATATCGGAGCCGGGGACGGTGAGATTTCGCTGCGCGTGGCCAA
CACCGTTTCCGAGCTGAGCGGAAGTGCCGGGCTGCGGGTCTTCGCCACCG
AGGCCAGTTGGACCATGCGCGATCGGCTGAAGAAGCTGAACTTCAACGTA
ATCACCGAGATAGACGGTCTGCAGAACCTGGAATTGATTCTGTGCCTCAA
CGTATTGGACCGCTGCTTCGATTCATTCAAGCTGCTCGAGGACATTCACC
TGGCACTAGCTCCCAATGGTCGAGCAGTTGTGGCCTTAGTACTTCCCTAC
ATGCACTACGTGGAGACGAATACCTCGCATCTGCCGCTGCGCCCGCTGCT
GGAGAACAACGGGCGACAGGCGTCGTTCGAGGAGGAGGCGGCCAGGTTTA
TGGAGCTGCTGGAGAACTGTGGCTACCGCGTGGAGGCATGGACCAAGGCG
CCGTACTTGTGCGAGGGTGATCTCCACCAGTCGTTCTATTGGTTAATCGA
TTTAATTGTTGTCATTTCCAAGAAGACATTCGCAAGCTTTCTAGACCAT
BO06389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5339-RA | 918 | CG5339-PA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5339-RA | 1239 | CG5339-RA | 99..1014 | 16..931 | 4580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23897121..23897657 | 931..395 | 2685 | 100 | Minus |
2R | 25286936 | 2R | 23897713..23898001 | 396..108 | 1445 | 100 | Minus |
2R | 25286936 | 2R | 23898055..23898148 | 109..16 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:29:50 has no hits.
BO06389.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:18 Download gff for
BO06389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 1..918 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:32 Download gff for
BO06389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 79..1002 | 8..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:24 Download gff for
BO06389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 100..1014 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:19 Download gff for
BO06389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 79..1002 | 8..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:44 Download gff for
BO06389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5339-RA | 100..1014 | 17..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:44 Download gff for
BO06389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23897119..23897657 | 395..933 | 99 | <- | Minus |
2R | 23897715..23897999 | 110..394 | 100 | <- | Minus |
2R | 23898055..23898147 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:24 Download gff for
BO06389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19784642..19785180 | 395..933 | 99 | <- | Minus |
arm_2R | 19785238..19785522 | 110..394 | 100 | <- | Minus |
arm_2R | 19785578..19785670 | 17..109 | 100 | | Minus |
BO06389.pep Sequence
Translation from 16 to 949
> BO06389.pep
MAVYRPRGTLARVIHAKFHNDNSLEDIDTRKWYCLNHELPPRFQSKFVPL
EPDATTVSWLERTKALSANIWTHLWHALARSILQFFMTQTDINGFLKRGS
MFILSEEQFRKLLVAGGFQPASGQEPVTLLDIGAGDGEISLRVANTVSEL
SGSAGLRVFATEASWTMRDRLKKLNFNVITEIDGLQNLELILCLNVLDRC
FDSFKLLEDIHLALAPNGRAVVALVLPYMHYVETNTSHLPLRPLLENNGR
QASFEEEAARFMELLENCGYRVEAWTKAPYLCEGDLHQSFYWLIDLIVVI
SKKTFASFLDH
BO06389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5339-PA | 305 | CG5339-PA | 1..305 | 1..305 | 1596 | 100 | Plus |