Clone BO06389 Report

Search the DGRC for BO06389

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG5339-RA
Protein status:BO06389.pep: validated full length
Sequenced Size:949

Clone Sequence Records

BO06389.3prime Sequence

860 bp (803 high quality bases) assembled on 2005-12-03

> BO06389.3prime
ATGGTCTAGAAAGCTTGCGAATGTCTTCTTGGAAATGACAACAATTAAAT
CGATTAACCAATAGAACGACTGGTGGAGATCACCCTCGCACAAGTACGGC
GCCTTGGTCCATGCCTCCACGCGGTAGCCACAGTTCTCCAGCAGCTCCAT
AAACCTGGCCGCCTCCTCCTCGAACGACGCCTGTCGCCCGTTGTTCTCCA
GCAGCGGGCGCAGCGGCAGATGCGAGGTATTCGTCTCCACGTAGTGCATG
TAGGGAAGTACTAAGGCCACAACTGCTCGACCATTGGGAGCTAGTGCCAG
GTGAATGTCCTCGAGCAGCTTGAATGAATCGAAGCAGCGGTCCAATACGT
TGAGGCACAGAATCAATTCCAGGTTCTGCAGACCGTCTATCTCGGTGATT
ACGTTGAAGTTCAGCTTCTTCAGCCGATCGCGCATGGTCCAACTGGCCTC
GGTGGCGAAGACCCGCAGCCCGGCACTTCCGCTCAGCTCGGAAACGGTGT
TGGCCACGCGCAGCGAAATCTCACCGTCCCCGGCTCCGATATCCAGCAAC
GTGACAGGTTCTTGACCGCTGGCAGGCTGAAAGCCGCCTGCTACTAGCAG
CTTGCGAAACTGTTCCTCGGACAGTATGAACATGGAGCCGCGCTTCAGGA
ACCCGTTGATGTCCGTCTGGGTCATGAAGAACTGCAGGATTGAGCGAGCC
AGGGCGTGCCACAAGTGGGTCCAGATGTTTGCCGAAAGCGCCTTGGTGCG
CTCCAGCCAGCTCACGGTGGTGGCATCCGGCTCGAGCGGCACGAACTTGG
ACTGGAATCTCGGCGGCAGCTCGTGGTTCAGGCAGTACCACTTCCGAGTG
TCTATGTCCT

BO06389.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-PA 918 CG5339-RA 74..915 860..19 4210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-RA 1239 CG5339-RA 173..1014 860..19 4210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23897121..23897657 19..555 2685 100 Plus
2R 25286936 2R 23897713..23898001 554..842 1445 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:08:30 has no hits.

BO06389.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:08 Download gff for BO06389.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-PA 74..918 18..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:22 Download gff for BO06389.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-PA 74..918 18..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:33 Download gff for BO06389.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 173..1014 19..860 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:00 Download gff for BO06389.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 173..1014 19..860 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:00 Download gff for BO06389.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23897121..23897657 19..555 100 <- Plus
2R 23897715..23897999 556..840 100 <- Plus
2R 23898055..23898074 841..860 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:33 Download gff for BO06389.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19784644..19785180 19..555 100 <- Plus
arm_2R 19785238..19785522 556..840 100 <- Plus
arm_2R 19785578..19785597 841..860 100   Plus

BO06389.5prime Sequence

860 bp (751 high quality bases) assembled on 2005-12-03

> BO06389.5prime
GAAGTTATCAGTCGACATGGCTGTGTATCGTCCCCGCGGCACCCTGGCCA
GGGTAATCCACGCCAAATTCCACAACGACAACTCTCTGGAGGACATAGAC
ACTCGGAAGTGGTACTGCCTGAACCACGAGCTGCCGCCGAGATTCCAGTC
CAAGTTCGTGCCGCTCGAGCCGGATGCCACCACCGTGAGCTGGCTGGAGC
GCACCAAGGCGCTTTCGGCAAACATCTGGACCCACTTGTGGCACGCCCTG
GCTCGCTCAATCCTGCAGTTCTTCATGACCCAGACGGACATCAACGGGTT
CCTGAAGCGCGGCTCCATGTTCATACTGTCCGAGGAACAGTTTCGCAAGC
TGCTAGTAGCAGGCGGCTTTCAGCCTGCCAGCGGTCAAGAACCTGTCACG
TTGCTGGATATCGGAGCCGGGGACGGTGAGATTTCGCTGCGCGTGGCCAA
CACCGTTTCCGAGCTGAGCGGAAGTGCCGGGCTGCGGGTCTTCGCCACCG
AGGCCAGTTGGACCATGCGCGATCGGCTGAAGAAGCTGAACTTCAACGTA
ATCACCGAGATAGACGGTCTGCAGAACCTGGAATTGATTCTGTGCCTCAA
CGTATTGGACCGCTGCTTCGATTCATTCAAGCTGCTCGAGGACATTCACC
TGGCACTAGCTCCCAATGGTCGAGCAGTTGTGGCCTTAGTACTTCCCTAC
ATGCACTACGTGGAGACGAATACCTCGCATCTGCCGCTGCGCCCGCTGCT
GGAGACAACGGGCGACAGGCGTCGTTCGAGGAGGAGGCGGCCAGGTTTAT
GGAGCTGCTGGAGAACTGTGGCTACCGCGTGGAGGCATGGACCAAGGCGC
CGTACTTGTG

BO06389.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-PA 918 CG5339-RA 1..739 17..755 3695 100 Plus
CG5339-PA 918 CG5339-RA 740..845 755..860 530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-RA 1239 CG5339-RA 99..944 16..860 4205 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23897191..23897657 860..395 2285 99.8 Minus
2R 25286936 2R 23897713..23898001 396..108 1445 100 Minus
2R 25286936 2R 23898055..23898148 109..16 470 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:44:37 has no hits.

BO06389.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:09 Download gff for BO06389.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-PA 1..845 17..860 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:23 Download gff for BO06389.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-PA 1..845 17..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:59 Download gff for BO06389.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 91..944 8..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:20 Download gff for BO06389.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 91..944 8..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:20 Download gff for BO06389.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23897191..23897657 395..860 99 <- Minus
2R 23897715..23897999 110..394 100 <- Minus
2R 23898055..23898156 8..109 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:59 Download gff for BO06389.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19784714..19785180 395..860 99 <- Minus
arm_2R 19785238..19785522 110..394 100 <- Minus
arm_2R 19785578..19785679 8..109 96   Minus

BO06389.complete Sequence

949 bp (949 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630373

> BO06389.complete
GAAGTTATCAGTCGACATGGCTGTGTATCGTCCCCGCGGCACCCTGGCCA
GGGTAATCCACGCCAAATTCCACAACGACAACTCTCTGGAGGACATAGAC
ACTCGGAAGTGGTACTGCCTGAACCACGAGCTGCCGCCGAGATTCCAGTC
CAAGTTCGTGCCGCTCGAGCCGGATGCCACCACCGTGAGCTGGCTGGAGC
GCACCAAGGCGCTTTCGGCAAACATCTGGACCCACTTGTGGCACGCCCTG
GCTCGCTCAATCCTGCAGTTCTTCATGACCCAGACGGACATCAACGGGTT
CCTGAAGCGCGGCTCCATGTTCATACTGTCCGAGGAACAGTTTCGCAAGC
TGCTAGTAGCAGGCGGCTTTCAGCCTGCCAGCGGTCAAGAACCTGTCACG
TTGCTGGATATCGGAGCCGGGGACGGTGAGATTTCGCTGCGCGTGGCCAA
CACCGTTTCCGAGCTGAGCGGAAGTGCCGGGCTGCGGGTCTTCGCCACCG
AGGCCAGTTGGACCATGCGCGATCGGCTGAAGAAGCTGAACTTCAACGTA
ATCACCGAGATAGACGGTCTGCAGAACCTGGAATTGATTCTGTGCCTCAA
CGTATTGGACCGCTGCTTCGATTCATTCAAGCTGCTCGAGGACATTCACC
TGGCACTAGCTCCCAATGGTCGAGCAGTTGTGGCCTTAGTACTTCCCTAC
ATGCACTACGTGGAGACGAATACCTCGCATCTGCCGCTGCGCCCGCTGCT
GGAGAACAACGGGCGACAGGCGTCGTTCGAGGAGGAGGCGGCCAGGTTTA
TGGAGCTGCTGGAGAACTGTGGCTACCGCGTGGAGGCATGGACCAAGGCG
CCGTACTTGTGCGAGGGTGATCTCCACCAGTCGTTCTATTGGTTAATCGA
TTTAATTGTTGTCATTTCCAAGAAGACATTCGCAAGCTTTCTAGACCAT

BO06389.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-RA 918 CG5339-PA 1..915 17..931 4575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-RA 1239 CG5339-RA 99..1014 16..931 4580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23897121..23897657 931..395 2685 100 Minus
2R 25286936 2R 23897713..23898001 396..108 1445 100 Minus
2R 25286936 2R 23898055..23898148 109..16 470 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:29:50 has no hits.

BO06389.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:18 Download gff for BO06389.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 1..918 17..932 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:32 Download gff for BO06389.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 79..1002 8..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:24 Download gff for BO06389.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 100..1014 17..933 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:19 Download gff for BO06389.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 79..1002 8..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:44 Download gff for BO06389.complete
Subject Subject Range Query Range Percent Splice Strand
CG5339-RA 100..1014 17..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:44 Download gff for BO06389.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23897119..23897657 395..933 99 <- Minus
2R 23897715..23897999 110..394 100 <- Minus
2R 23898055..23898147 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:24 Download gff for BO06389.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19784642..19785180 395..933 99 <- Minus
arm_2R 19785238..19785522 110..394 100 <- Minus
arm_2R 19785578..19785670 17..109 100   Minus

BO06389.pep Sequence

Translation from 16 to 949

> BO06389.pep
MAVYRPRGTLARVIHAKFHNDNSLEDIDTRKWYCLNHELPPRFQSKFVPL
EPDATTVSWLERTKALSANIWTHLWHALARSILQFFMTQTDINGFLKRGS
MFILSEEQFRKLLVAGGFQPASGQEPVTLLDIGAGDGEISLRVANTVSEL
SGSAGLRVFATEASWTMRDRLKKLNFNVITEIDGLQNLELILCLNVLDRC
FDSFKLLEDIHLALAPNGRAVVALVLPYMHYVETNTSHLPLRPLLENNGR
QASFEEEAARFMELLENCGYRVEAWTKAPYLCEGDLHQSFYWLIDLIVVI
SKKTFASFLDH

BO06389.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5339-PA 305 CG5339-PA 1..305 1..305 1596 100 Plus