Clone Sequence Records
BO06390.3prime Sequence
614 bp (613 high quality bases) assembled on 2005-12-03
> BO06390.3prime
ATGGTCTAGAAAGCTTGCTTTCTCCTCCATCTGCTTGTCGCGGGCGATGA
CAAAGTCCTCAAATTTGACCATGTACGTGGTGCCCTTGTGCCAGTGGGCG
GTGACCTTGCACGGAAATCCGCAGTTCGTGAGCACAGCTTCCACGATGCC
AGCGGTGAAATTAGCGCAATTCAGCGAGCCCTTATCCTTTGGCACGCTTA
TGAATGTGTTGACAAGCGGTTCCTTTTCAATTATGTAGTATGTCCTTTCG
TCGTCGTTGGCATGTTCCAGTTTCTCCGCCTCTTTGCCAAAGAGATTCTT
CCACACCGTGGTCTTAACAAAGAGAAGCATTTGGGTTAGTTTTGTTTCTC
GCTTGGAGCTGCGCTCCCTCACGAAATACAGGTCGATTATGCGGGTGCCT
ACATCTTGACCCAGATCGTGGAGTCTTGTTTGCAATTCTGGGACTGTAAA
CACTCGGCTCTGCGAGTACTGGACGATTTCGCTGAAAAGCAGCGCCACAA
TGCTCTGGGAAACCTCCGTTTTGCCCTTGGATAGTGGTCTGTCTAGGATG
TTGCTGCGCGGACGCATCGAGGATATTTTTAGGGCCTCCAGTTTTTCCAT
GTCGACTGATAACT
BO06390.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10153-PA | 585 | CG10153-RA | 1..582 | 600..19 | 2910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs31-RA | 666 | CG10153-RA | 66..647 | 600..19 | 2910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14757241..14757552 | 115..426 | 1560 | 100 | Plus |
2R | 25286936 | 2R | 14757606..14757781 | 425..600 | 880 | 100 | Plus |
2R | 25286936 | 2R | 14757083..14757178 | 19..114 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:08:27 has no hits.
BO06390.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:10 Download gff for
BO06390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-PA | 1..585 | 15..600 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:24 Download gff for
BO06390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-PA | 1..585 | 15..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:54 Download gff for
BO06390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-RA | 55..650 | 15..612 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:03 Download gff for
BO06390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs31-RA | 55..650 | 15..612 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:03 Download gff for
BO06390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14757079..14757178 | 15..114 | 98 | <- | Plus |
2R | 14757241..14757550 | 115..424 | 100 | <- | Plus |
2R | 14757606..14757792 | 425..612 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:54 Download gff for
BO06390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10644584..10644683 | 15..114 | 98 | <- | Plus |
arm_2R | 10644746..10645055 | 115..424 | 100 | <- | Plus |
arm_2R | 10645111..10645297 | 425..612 | 97 | | Plus |
BO06390.5prime Sequence
614 bp (613 high quality bases) assembled on 2005-12-03
> BO06390.5prime
GAAGTTATCAGTCGACATGGAAAAACTGGAGGCCCTAAAAATATCCTCGA
TGCGTCCGCGCAGCAACATCCTAGACAGACCACTATCCAAGGGCAAAACG
GAGGTTTCCCAGAGCATTGTGGCGCTGCTTTTCAGCGAAATCGTCCAGTA
CTCGCAGAGCCGAGTGTTTACAGTCCCAGAATTGCAAACAAGACTCCACG
ATCTGGGTCAAGATGTAGGCACCCGCATAATCGACCTGTATTTCGTGAGG
GAGCGCAGCTCCAAGCGAGAAACAAAACTAACCCAAATGCTTCTCTTTGT
TAAGACCACGGTGTGGAAGAATCTCTTTGGCAAAGAGGCGGAGAAACTGG
AACATGCCAACGACGACGAAAGGACATACTACATAATTGAAAAGGAACCG
CTTGTCAACACATTCATAAGCGTGCCAAAGGATAAGGGCTCGCTGAATTG
CGCTAATTTCACCGCTGGCATCGTGGAAGCTGTGCTCACGAACTGCGGAT
TTCCGTGCAAGGTCACCGCCCACTGGCACAAGGGCACCACGTACATGGTC
AAATTTGAGGACTTTGTCATCGCCCGCGACAAGCAGATGGAGGAGAAAGC
AAGCTTTCTAGACC
BO06390.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10153-PA | 585 | CG10153-RA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs31-RA | 666 | CG10153-RA | 66..647 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:41:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14757241..14757552 | 502..191 | 1560 | 100 | Minus |
2R | 25286936 | 2R | 14757606..14757781 | 192..17 | 880 | 100 | Minus |
2R | 25286936 | 2R | 14757083..14757178 | 598..503 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:41:47 has no hits.
BO06390.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:11 Download gff for
BO06390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-PA | 1..585 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:26 Download gff for
BO06390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-PA | 1..585 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:08 Download gff for
BO06390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-RA | 55..650 | 5..602 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:06 Download gff for
BO06390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs31-RA | 55..650 | 5..602 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:06 Download gff for
BO06390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14757079..14757178 | 503..602 | 98 | <- | Minus |
2R | 14757241..14757550 | 193..502 | 100 | <- | Minus |
2R | 14757606..14757792 | 5..192 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:08 Download gff for
BO06390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10644584..10644683 | 503..602 | 98 | <- | Minus |
arm_2R | 10644746..10645055 | 193..502 | 100 | <- | Minus |
arm_2R | 10645111..10645297 | 5..192 | 97 | | Minus |
BO06390.complete Sequence
616 bp (616 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630374
> BO06390.complete
GAAGTTATCAGTCGACATGGAAAAACTGGAGGCCCTAAAAATATCCTCGA
TGCGTCCGCGCAGCAACATCCTAGACAGACCACTATCCAAGGGCAAAACG
GAGGTTTCCCAGAGCATTGTGGCGCTGCTTTTCAGCGAAATCGTCCAGTA
CTCGCAGAGCCGAGTGTTTACAGTCCCAGAATTGCAAACAAGACTCCACG
ATCTGGGTCAAGATGTAGGCACCCGCATAATCGACCTGTATTTCGTGAGG
GAGCGCAGCTCCAAGCGAGAAACAAAACTAACCCAAATGCTTCTCTTTGT
TAAGACCACGGTGTGGAAGAATCTCTTTGGCAAAGAGGCGGAGAAACTGG
AACATGCCAACGACGACGAAAGGACATACTACATAATTGAAAAGGAACCG
CTTGTCAACACATTCATAAGCGTGCCAAAGGATAAGGGCTCGCTGAATTG
CGCTAATTTCACCGCTGGCATCGTGGAAGCTGTGCTCACGAACTGCGGAT
TTCCGTGCAAGGTCACCGCCCACTGGCACAAGGGCACCACGTACATGGTC
AAATTTGAGGACTTTGTCATCGCCCGCGACAAGCAGATGGAGGAGAAAGC
AAGCTTTCTAGACCAT
BO06390.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs31-RA | 585 | CG10153-PA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs31-RA | 666 | CG10153-RA | 66..647 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14757241..14757552 | 502..191 | 1560 | 100 | Minus |
2R | 25286936 | 2R | 14757606..14757781 | 192..17 | 880 | 100 | Minus |
2R | 25286936 | 2R | 14757083..14757178 | 598..503 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:35:55 has no hits.
BO06390.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:20 Download gff for
BO06390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-RA | 1..585 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:33 Download gff for
BO06390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-RA | 38..633 | 5..602 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:46 Download gff for
BO06390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-RA | 66..647 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:20 Download gff for
BO06390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10153-RA | 38..633 | 5..602 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:37 Download gff for
BO06390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trs31-RA | 66..647 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:37 Download gff for
BO06390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14757606..14757781 | 17..192 | 100 | | Minus |
2R | 14757081..14757178 | 503..600 | 97 | <- | Minus |
2R | 14757241..14757550 | 193..502 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:46 Download gff for
BO06390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10644586..10644683 | 503..600 | 97 | <- | Minus |
arm_2R | 10644746..10645055 | 193..502 | 100 | <- | Minus |
arm_2R | 10645111..10645286 | 17..192 | 100 | | Minus |
BO06390.pep Sequence
Translation from 16 to 616
> BO06390.pep
MEKLEALKISSMRPRSNILDRPLSKGKTEVSQSIVALLFSEIVQYSQSRV
FTVPELQTRLHDLGQDVGTRIIDLYFVRERSSKRETKLTQMLLFVKTTVW
KNLFGKEAEKLEHANDDERTYYIIEKEPLVNTFISVPKDKGSLNCANFTA
GIVEAVLTNCGFPCKVTAHWHKGTTYMVKFEDFVIARDKQMEEKASFLDH
BO06390.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trs31-PA | 194 | CG10153-PA | 1..194 | 1..194 | 995 | 100 | Plus |