Clone BO06390 Report

Search the DGRC for BO06390

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG10153-RA
Protein status:BO06390.pep: validated full length
Sequenced Size:616

Clone Sequence Records

BO06390.3prime Sequence

614 bp (613 high quality bases) assembled on 2005-12-03

> BO06390.3prime
ATGGTCTAGAAAGCTTGCTTTCTCCTCCATCTGCTTGTCGCGGGCGATGA
CAAAGTCCTCAAATTTGACCATGTACGTGGTGCCCTTGTGCCAGTGGGCG
GTGACCTTGCACGGAAATCCGCAGTTCGTGAGCACAGCTTCCACGATGCC
AGCGGTGAAATTAGCGCAATTCAGCGAGCCCTTATCCTTTGGCACGCTTA
TGAATGTGTTGACAAGCGGTTCCTTTTCAATTATGTAGTATGTCCTTTCG
TCGTCGTTGGCATGTTCCAGTTTCTCCGCCTCTTTGCCAAAGAGATTCTT
CCACACCGTGGTCTTAACAAAGAGAAGCATTTGGGTTAGTTTTGTTTCTC
GCTTGGAGCTGCGCTCCCTCACGAAATACAGGTCGATTATGCGGGTGCCT
ACATCTTGACCCAGATCGTGGAGTCTTGTTTGCAATTCTGGGACTGTAAA
CACTCGGCTCTGCGAGTACTGGACGATTTCGCTGAAAAGCAGCGCCACAA
TGCTCTGGGAAACCTCCGTTTTGCCCTTGGATAGTGGTCTGTCTAGGATG
TTGCTGCGCGGACGCATCGAGGATATTTTTAGGGCCTCCAGTTTTTCCAT
GTCGACTGATAACT

BO06390.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10153-PA 585 CG10153-RA 1..582 600..19 2910 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
Trs31-RA 666 CG10153-RA 66..647 600..19 2910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14757241..14757552 115..426 1560 100 Plus
2R 25286936 2R 14757606..14757781 425..600 880 100 Plus
2R 25286936 2R 14757083..14757178 19..114 480 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:08:27 has no hits.

BO06390.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:10 Download gff for BO06390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10153-PA 1..585 15..600 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:24 Download gff for BO06390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10153-PA 1..585 15..600 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:54 Download gff for BO06390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10153-RA 55..650 15..612 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:03 Download gff for BO06390.3prime
Subject Subject Range Query Range Percent Splice Strand
Trs31-RA 55..650 15..612 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:03 Download gff for BO06390.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14757079..14757178 15..114 98 <- Plus
2R 14757241..14757550 115..424 100 <- Plus
2R 14757606..14757792 425..612 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:54 Download gff for BO06390.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10644584..10644683 15..114 98 <- Plus
arm_2R 10644746..10645055 115..424 100 <- Plus
arm_2R 10645111..10645297 425..612 97   Plus

BO06390.5prime Sequence

614 bp (613 high quality bases) assembled on 2005-12-03

> BO06390.5prime
GAAGTTATCAGTCGACATGGAAAAACTGGAGGCCCTAAAAATATCCTCGA
TGCGTCCGCGCAGCAACATCCTAGACAGACCACTATCCAAGGGCAAAACG
GAGGTTTCCCAGAGCATTGTGGCGCTGCTTTTCAGCGAAATCGTCCAGTA
CTCGCAGAGCCGAGTGTTTACAGTCCCAGAATTGCAAACAAGACTCCACG
ATCTGGGTCAAGATGTAGGCACCCGCATAATCGACCTGTATTTCGTGAGG
GAGCGCAGCTCCAAGCGAGAAACAAAACTAACCCAAATGCTTCTCTTTGT
TAAGACCACGGTGTGGAAGAATCTCTTTGGCAAAGAGGCGGAGAAACTGG
AACATGCCAACGACGACGAAAGGACATACTACATAATTGAAAAGGAACCG
CTTGTCAACACATTCATAAGCGTGCCAAAGGATAAGGGCTCGCTGAATTG
CGCTAATTTCACCGCTGGCATCGTGGAAGCTGTGCTCACGAACTGCGGAT
TTCCGTGCAAGGTCACCGCCCACTGGCACAAGGGCACCACGTACATGGTC
AAATTTGAGGACTTTGTCATCGCCCGCGACAAGCAGATGGAGGAGAAAGC
AAGCTTTCTAGACC

BO06390.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10153-PA 585 CG10153-RA 1..582 17..598 2910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Trs31-RA 666 CG10153-RA 66..647 17..598 2910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14757241..14757552 502..191 1560 100 Minus
2R 25286936 2R 14757606..14757781 192..17 880 100 Minus
2R 25286936 2R 14757083..14757178 598..503 480 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:41:47 has no hits.

BO06390.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:11 Download gff for BO06390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10153-PA 1..585 17..602 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:26 Download gff for BO06390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10153-PA 1..585 17..602 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:08 Download gff for BO06390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10153-RA 55..650 5..602 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:06 Download gff for BO06390.5prime
Subject Subject Range Query Range Percent Splice Strand
Trs31-RA 55..650 5..602 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:06 Download gff for BO06390.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14757079..14757178 503..602 98 <- Minus
2R 14757241..14757550 193..502 100 <- Minus
2R 14757606..14757792 5..192 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:08 Download gff for BO06390.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10644584..10644683 503..602 98 <- Minus
arm_2R 10644746..10645055 193..502 100 <- Minus
arm_2R 10645111..10645297 5..192 97   Minus

BO06390.complete Sequence

616 bp (616 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630374

> BO06390.complete
GAAGTTATCAGTCGACATGGAAAAACTGGAGGCCCTAAAAATATCCTCGA
TGCGTCCGCGCAGCAACATCCTAGACAGACCACTATCCAAGGGCAAAACG
GAGGTTTCCCAGAGCATTGTGGCGCTGCTTTTCAGCGAAATCGTCCAGTA
CTCGCAGAGCCGAGTGTTTACAGTCCCAGAATTGCAAACAAGACTCCACG
ATCTGGGTCAAGATGTAGGCACCCGCATAATCGACCTGTATTTCGTGAGG
GAGCGCAGCTCCAAGCGAGAAACAAAACTAACCCAAATGCTTCTCTTTGT
TAAGACCACGGTGTGGAAGAATCTCTTTGGCAAAGAGGCGGAGAAACTGG
AACATGCCAACGACGACGAAAGGACATACTACATAATTGAAAAGGAACCG
CTTGTCAACACATTCATAAGCGTGCCAAAGGATAAGGGCTCGCTGAATTG
CGCTAATTTCACCGCTGGCATCGTGGAAGCTGTGCTCACGAACTGCGGAT
TTCCGTGCAAGGTCACCGCCCACTGGCACAAGGGCACCACGTACATGGTC
AAATTTGAGGACTTTGTCATCGCCCGCGACAAGCAGATGGAGGAGAAAGC
AAGCTTTCTAGACCAT

BO06390.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Trs31-RA 585 CG10153-PA 1..582 17..598 2910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Trs31-RA 666 CG10153-RA 66..647 17..598 2910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14757241..14757552 502..191 1560 100 Minus
2R 25286936 2R 14757606..14757781 192..17 880 100 Minus
2R 25286936 2R 14757083..14757178 598..503 480 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:35:55 has no hits.

BO06390.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:20 Download gff for BO06390.complete
Subject Subject Range Query Range Percent Splice Strand
CG10153-RA 1..585 17..602 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:33 Download gff for BO06390.complete
Subject Subject Range Query Range Percent Splice Strand
CG10153-RA 38..633 5..602 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:46 Download gff for BO06390.complete
Subject Subject Range Query Range Percent Splice Strand
CG10153-RA 66..647 17..600 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:20 Download gff for BO06390.complete
Subject Subject Range Query Range Percent Splice Strand
CG10153-RA 38..633 5..602 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:37 Download gff for BO06390.complete
Subject Subject Range Query Range Percent Splice Strand
Trs31-RA 66..647 17..600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:37 Download gff for BO06390.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14757606..14757781 17..192 100   Minus
2R 14757081..14757178 503..600 97 <- Minus
2R 14757241..14757550 193..502 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:46 Download gff for BO06390.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10644586..10644683 503..600 97 <- Minus
arm_2R 10644746..10645055 193..502 100 <- Minus
arm_2R 10645111..10645286 17..192 100   Minus

BO06390.pep Sequence

Translation from 16 to 616

> BO06390.pep
MEKLEALKISSMRPRSNILDRPLSKGKTEVSQSIVALLFSEIVQYSQSRV
FTVPELQTRLHDLGQDVGTRIIDLYFVRERSSKRETKLTQMLLFVKTTVW
KNLFGKEAEKLEHANDDERTYYIIEKEPLVNTFISVPKDKGSLNCANFTA
GIVEAVLTNCGFPCKVTAHWHKGTTYMVKFEDFVIARDKQMEEKASFLDH

BO06390.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Trs31-PA 194 CG10153-PA 1..194 1..194 995 100 Plus