Clone BO06393 Report

Search the DGRC for BO06393

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG3663-RA
Protein status:BO06393.pep: validated full length
Sequenced Size:658

Clone Sequence Records

BO06393.3prime Sequence

656 bp (655 high quality bases) assembled on 2005-12-03

> BO06393.3prime
ATGGTCTAGAAAGCTTGCCAGCTTGGCACTGCCCGCTGGCACTCCGCTCC
CGTTGCGCGTGAGTTCCATATCCACCGACGGCTGGTTCACCAATTTCCGG
ACCACATCGAACTTGGGGTTGTTCTTATCTCGAACCAAGTCGAAGATAAC
GCTCTCACTAGTGGTGATCACACAGCCCGCTTGACGCAGGCGATCCAGGG
CTAGATCTCGATCCTGGTTCAGCCTGGAGGAGCAGCAGTCCGCCACTATG
TATACGTTGATGTTTTGCTCGAGGAGATCGATGGCGGTCTGCTCCACGCA
AATGTGGGACTCGAGGCCATATAGCACGACATCCTCTGGCTTGTCATTGA
AGATATCCTTGATCACAGCCTTGACTTCGGGAGTAAACATGCTGAAAAGG
GTTTTACCGGAGACCAGCTTCGCATGGCTTACATCCAGTTGGGCCACTGT
TTTTCCTAGTTTTTCCGGATAGTGTTCGGTTACAATCAGAGGAACATCTA
AAGCCTTTCCCGCCCGAGTTAGTTTGTCGACGTTTTTGATCATGTTATCA
AAGAGCGGCATGGCCGGTCGGAACTTTTCTTGAATGTCGCACAACAGGAA
AAGCGTTTTCTTCGGGTTCAAGTGACAGCGTCGCAGGGCCATGTCGACTG
ATAACT

BO06393.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3663-PA 627 CG3663-RA 1..624 642..19 3120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3663-RA 780 CG3663-RA 93..716 642..19 3120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24662053..24662345 311..19 1465 100 Minus
2R 25286936 2R 24661788..24661997 519..310 1050 100 Minus
2R 25286936 2R 24661595..24661717 642..520 615 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:08:34 has no hits.

BO06393.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:16 Download gff for BO06393.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-PA 1..627 16..642 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:33 Download gff for BO06393.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-PA 1..627 16..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:35 Download gff for BO06393.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 93..716 19..642 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:02 Download gff for BO06393.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 93..716 19..642 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:02 Download gff for BO06393.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24661595..24661717 520..642 100 -> Minus
2R 24661788..24661997 310..519 100 -> Minus
2R 24662055..24662345 19..309 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:35 Download gff for BO06393.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20549118..20549240 520..642 100 -> Minus
arm_2R 20549311..20549520 310..519 100 -> Minus
arm_2R 20549578..20549868 19..309 100   Minus

BO06393.5prime Sequence

656 bp (655 high quality bases) assembled on 2005-12-03

> BO06393.5prime
GAAGTTATCAGTCGACATGGCCCTGCGACGCTGTCACTTGAACCCGAAGA
AAACGCTTTTCCTGTTGTGCGACATTCAAGAAAAGTTCCGACCGGCCATG
CCGCTCTTTGATAACATGATCAAAAACGTCGACAAACTAACTCGGGCGGG
AAAGGCTTTAGATGTTCCTCTGATTGTAACCGAACACTATCCGGAAAAAC
TAGGAAAAACAGTGGCCCAACTGGATGTAAGCCATGCGAAGCTGGTCTCC
GGTAAAACCCTTTTCAGCATGTTTACTCCCGAAGTCAAGGCTGTGATCAA
GGATATCTTCAATGACAAGCCAGAGGATGTCGTGCTATATGGCCTCGAGT
CCCACATTTGCGTGGAGCAGACCGCCATCGATCTCCTCGAGCAAAACATC
AACGTATACATAGTGGCGGACTGCTGCTCCTCCAGGCTGAACCAGGATCG
AGATCTAGCCCTGGATCGCCTGCGTCAAGCGGGCTGTGTGATCACCACTA
GTGAGAGCGTTATCTTCGACTTGGTTCGAGATAAGAACAACCCCAAGTTC
GATGTGGTCCGGAAATTGGTGAACCAGCCGTCGGTGGATATGGAACTCAC
GCGCAACGGGAGCGGAGTGCCAGCGGGCAGTGCCAAGCTGGCAAGCTTTC
TAGACC

BO06393.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3663-PA 627 CG3663-RA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3663-RA 780 CG3663-RA 93..716 17..640 3120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24662053..24662345 348..640 1465 100 Plus
2R 25286936 2R 24661788..24661997 140..349 1050 100 Plus
2R 25286936 2R 24661595..24661717 17..139 615 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:46:51 has no hits.

BO06393.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:17 Download gff for BO06393.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-PA 1..627 17..643 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:35 Download gff for BO06393.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-PA 1..627 17..643 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:56 Download gff for BO06393.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 93..716 17..640 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:58 Download gff for BO06393.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 93..716 17..640 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:58 Download gff for BO06393.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24662055..24662345 350..640 100   Plus
2R 24661595..24661717 17..139 100 -> Plus
2R 24661788..24661997 140..349 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:56 Download gff for BO06393.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20549118..20549240 17..139 100 -> Plus
arm_2R 20549311..20549520 140..349 100 -> Plus
arm_2R 20549578..20549868 350..640 100   Plus

BO06393.complete Sequence

658 bp (658 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630375

> BO06393.complete
GAAGTTATCAGTCGACATGGCCCTGCGACGCTGTCACTTGAACCCGAAGA
AAACGCTTTTCCTGTTGTGCGACATTCAAGAAAAGTTCCGACCGGCCATG
CCGCTCTTTGATAACATGATCAAAAACGTCGACAAACTAACTCGGGCGGG
AAAGGCTTTAGATGTTCCTCTGATTGTAACCGAACACTATCCGGAAAAAC
TAGGAAAAACAGTGGCCCAACTGGATGTAAGCCATGCGAAGCTGGTCTCC
GGTAAAACCCTTTTCAGCATGTTTACTCCCGAAGTCAAGGCTGTGATCAA
GGATATCTTCAATGACAAGCCAGAGGATGTCGTGCTATATGGCCTCGAGT
CCCACATTTGCGTGGAGCAGACCGCCATCGATCTCCTCGAGCAAAACATC
AACGTATACATAGTGGCGGACTGCTGCTCCTCCAGGCTGAACCAGGATCG
AGATCTAGCCCTGGATCGCCTGCGTCAAGCGGGCTGTGTGATCACCACTA
GTGAGAGCGTTATCTTCGACTTGGTTCGAGATAAGAACAACCCCAAGTTC
GATGTGGTCCGGAAATTGGTGAACCAGCCGTCGGTGGATATGGAACTCAC
GCGCAACGGGAGCGGAGTGCCAGCGGGCAGTGCCAAGCTGGCAAGCTTTC
TAGACCAT

BO06393.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3663-RA 627 CG3663-PA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3663-RA 780 CG3663-RA 93..716 17..640 3120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24662053..24662345 348..640 1465 100 Plus
2R 25286936 2R 24661788..24661997 140..349 1050 100 Plus
2R 25286936 2R 24661595..24661717 17..139 615 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:56:40 has no hits.

BO06393.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:21 Download gff for BO06393.complete
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 1..627 17..643 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:07 Download gff for BO06393.complete
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 72..695 17..640 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:17 Download gff for BO06393.complete
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 93..716 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:21 Download gff for BO06393.complete
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 72..695 17..640 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:28 Download gff for BO06393.complete
Subject Subject Range Query Range Percent Splice Strand
CG3663-RA 93..716 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:28 Download gff for BO06393.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24662055..24662345 350..642 99   Plus
2R 24661595..24661717 17..139 100 -> Plus
2R 24661788..24661997 140..349 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:17 Download gff for BO06393.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20549578..20549868 350..642 99   Plus
arm_2R 20549118..20549240 17..139 100 -> Plus
arm_2R 20549311..20549520 140..349 100 -> Plus

BO06393.pep Sequence

Translation from 16 to 658

> BO06393.pep
MALRRCHLNPKKTLFLLCDIQEKFRPAMPLFDNMIKNVDKLTRAGKALDV
PLIVTEHYPEKLGKTVAQLDVSHAKLVSGKTLFSMFTPEVKAVIKDIFND
KPEDVVLYGLESHICVEQTAIDLLEQNINVYIVADCCSSRLNQDRDLALD
RLRQAGCVITTSESVIFDLVRDKNNPKFDVVRKLVNQPSVDMELTRNGSG
VPAGSAKLASFLDH

BO06393.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3663-PA 208 CG3663-PA 1..208 1..208 1065 100 Plus
CG11333-PA 204 CG11333-PA 12..200 8..196 583 58.7 Plus