Clone Sequence Records
BO06393.3prime Sequence
656 bp (655 high quality bases) assembled on 2005-12-03
> BO06393.3prime
ATGGTCTAGAAAGCTTGCCAGCTTGGCACTGCCCGCTGGCACTCCGCTCC
CGTTGCGCGTGAGTTCCATATCCACCGACGGCTGGTTCACCAATTTCCGG
ACCACATCGAACTTGGGGTTGTTCTTATCTCGAACCAAGTCGAAGATAAC
GCTCTCACTAGTGGTGATCACACAGCCCGCTTGACGCAGGCGATCCAGGG
CTAGATCTCGATCCTGGTTCAGCCTGGAGGAGCAGCAGTCCGCCACTATG
TATACGTTGATGTTTTGCTCGAGGAGATCGATGGCGGTCTGCTCCACGCA
AATGTGGGACTCGAGGCCATATAGCACGACATCCTCTGGCTTGTCATTGA
AGATATCCTTGATCACAGCCTTGACTTCGGGAGTAAACATGCTGAAAAGG
GTTTTACCGGAGACCAGCTTCGCATGGCTTACATCCAGTTGGGCCACTGT
TTTTCCTAGTTTTTCCGGATAGTGTTCGGTTACAATCAGAGGAACATCTA
AAGCCTTTCCCGCCCGAGTTAGTTTGTCGACGTTTTTGATCATGTTATCA
AAGAGCGGCATGGCCGGTCGGAACTTTTCTTGAATGTCGCACAACAGGAA
AAGCGTTTTCTTCGGGTTCAAGTGACAGCGTCGCAGGGCCATGTCGACTG
ATAACT
BO06393.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3663-PA | 627 | CG3663-RA | 1..624 | 642..19 | 3120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3663-RA | 780 | CG3663-RA | 93..716 | 642..19 | 3120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24662053..24662345 | 311..19 | 1465 | 100 | Minus |
2R | 25286936 | 2R | 24661788..24661997 | 519..310 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 24661595..24661717 | 642..520 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:08:34 has no hits.
BO06393.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:16 Download gff for
BO06393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-PA | 1..627 | 16..642 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:33 Download gff for
BO06393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-PA | 1..627 | 16..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:35 Download gff for
BO06393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 93..716 | 19..642 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:02 Download gff for
BO06393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 93..716 | 19..642 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:02 Download gff for
BO06393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24661595..24661717 | 520..642 | 100 | -> | Minus |
2R | 24661788..24661997 | 310..519 | 100 | -> | Minus |
2R | 24662055..24662345 | 19..309 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:35 Download gff for
BO06393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20549118..20549240 | 520..642 | 100 | -> | Minus |
arm_2R | 20549311..20549520 | 310..519 | 100 | -> | Minus |
arm_2R | 20549578..20549868 | 19..309 | 100 | | Minus |
BO06393.5prime Sequence
656 bp (655 high quality bases) assembled on 2005-12-03
> BO06393.5prime
GAAGTTATCAGTCGACATGGCCCTGCGACGCTGTCACTTGAACCCGAAGA
AAACGCTTTTCCTGTTGTGCGACATTCAAGAAAAGTTCCGACCGGCCATG
CCGCTCTTTGATAACATGATCAAAAACGTCGACAAACTAACTCGGGCGGG
AAAGGCTTTAGATGTTCCTCTGATTGTAACCGAACACTATCCGGAAAAAC
TAGGAAAAACAGTGGCCCAACTGGATGTAAGCCATGCGAAGCTGGTCTCC
GGTAAAACCCTTTTCAGCATGTTTACTCCCGAAGTCAAGGCTGTGATCAA
GGATATCTTCAATGACAAGCCAGAGGATGTCGTGCTATATGGCCTCGAGT
CCCACATTTGCGTGGAGCAGACCGCCATCGATCTCCTCGAGCAAAACATC
AACGTATACATAGTGGCGGACTGCTGCTCCTCCAGGCTGAACCAGGATCG
AGATCTAGCCCTGGATCGCCTGCGTCAAGCGGGCTGTGTGATCACCACTA
GTGAGAGCGTTATCTTCGACTTGGTTCGAGATAAGAACAACCCCAAGTTC
GATGTGGTCCGGAAATTGGTGAACCAGCCGTCGGTGGATATGGAACTCAC
GCGCAACGGGAGCGGAGTGCCAGCGGGCAGTGCCAAGCTGGCAAGCTTTC
TAGACC
BO06393.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3663-PA | 627 | CG3663-RA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3663-RA | 780 | CG3663-RA | 93..716 | 17..640 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24662053..24662345 | 348..640 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 24661788..24661997 | 140..349 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 24661595..24661717 | 17..139 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:46:51 has no hits.
BO06393.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:17 Download gff for
BO06393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-PA | 1..627 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:35 Download gff for
BO06393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-PA | 1..627 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:56 Download gff for
BO06393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 93..716 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:58 Download gff for
BO06393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 93..716 | 17..640 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:58 Download gff for
BO06393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24662055..24662345 | 350..640 | 100 | | Plus |
2R | 24661595..24661717 | 17..139 | 100 | -> | Plus |
2R | 24661788..24661997 | 140..349 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:56 Download gff for
BO06393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20549118..20549240 | 17..139 | 100 | -> | Plus |
arm_2R | 20549311..20549520 | 140..349 | 100 | -> | Plus |
arm_2R | 20549578..20549868 | 350..640 | 100 | | Plus |
BO06393.complete Sequence
658 bp (658 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630375
> BO06393.complete
GAAGTTATCAGTCGACATGGCCCTGCGACGCTGTCACTTGAACCCGAAGA
AAACGCTTTTCCTGTTGTGCGACATTCAAGAAAAGTTCCGACCGGCCATG
CCGCTCTTTGATAACATGATCAAAAACGTCGACAAACTAACTCGGGCGGG
AAAGGCTTTAGATGTTCCTCTGATTGTAACCGAACACTATCCGGAAAAAC
TAGGAAAAACAGTGGCCCAACTGGATGTAAGCCATGCGAAGCTGGTCTCC
GGTAAAACCCTTTTCAGCATGTTTACTCCCGAAGTCAAGGCTGTGATCAA
GGATATCTTCAATGACAAGCCAGAGGATGTCGTGCTATATGGCCTCGAGT
CCCACATTTGCGTGGAGCAGACCGCCATCGATCTCCTCGAGCAAAACATC
AACGTATACATAGTGGCGGACTGCTGCTCCTCCAGGCTGAACCAGGATCG
AGATCTAGCCCTGGATCGCCTGCGTCAAGCGGGCTGTGTGATCACCACTA
GTGAGAGCGTTATCTTCGACTTGGTTCGAGATAAGAACAACCCCAAGTTC
GATGTGGTCCGGAAATTGGTGAACCAGCCGTCGGTGGATATGGAACTCAC
GCGCAACGGGAGCGGAGTGCCAGCGGGCAGTGCCAAGCTGGCAAGCTTTC
TAGACCAT
BO06393.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3663-RA | 627 | CG3663-PA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3663-RA | 780 | CG3663-RA | 93..716 | 17..640 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24662053..24662345 | 348..640 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 24661788..24661997 | 140..349 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 24661595..24661717 | 17..139 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:56:40 has no hits.
BO06393.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:21 Download gff for
BO06393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 1..627 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:07 Download gff for
BO06393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 72..695 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:17 Download gff for
BO06393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 93..716 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:21 Download gff for
BO06393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 72..695 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:28 Download gff for
BO06393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3663-RA | 93..716 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:28 Download gff for
BO06393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24662055..24662345 | 350..642 | 99 | | Plus |
2R | 24661595..24661717 | 17..139 | 100 | -> | Plus |
2R | 24661788..24661997 | 140..349 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:17 Download gff for
BO06393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20549578..20549868 | 350..642 | 99 | | Plus |
arm_2R | 20549118..20549240 | 17..139 | 100 | -> | Plus |
arm_2R | 20549311..20549520 | 140..349 | 100 | -> | Plus |
BO06393.pep Sequence
Translation from 16 to 658
> BO06393.pep
MALRRCHLNPKKTLFLLCDIQEKFRPAMPLFDNMIKNVDKLTRAGKALDV
PLIVTEHYPEKLGKTVAQLDVSHAKLVSGKTLFSMFTPEVKAVIKDIFND
KPEDVVLYGLESHICVEQTAIDLLEQNINVYIVADCCSSRLNQDRDLALD
RLRQAGCVITTSESVIFDLVRDKNNPKFDVVRKLVNQPSVDMELTRNGSG
VPAGSAKLASFLDH
BO06393.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3663-PA | 208 | CG3663-PA | 1..208 | 1..208 | 1065 | 100 | Plus |
CG11333-PA | 204 | CG11333-PA | 12..200 | 8..196 | 583 | 58.7 | Plus |