Clone Sequence Records
BO06396.3prime Sequence
761 bp (647 high quality bases) assembled on 2005-12-03
> BO06396.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCCCGGCCTGAGCCTTCTTTTTGTTCG
GCTTGGGCACCAGTTTCAGGCGGATCATTTCCTCGAGGAGCGTGGAGCCC
AGGTGGCAGGGATTGGCGGTCATACGGACTCCCGCTTTCTCCAGGGCGGC
CACCTTGTCCTTGGCCGCTCCCTTGCCACCGGAAATGATGGCGCCGGCGT
GACCCATTCGACGACCCGGTGGAGCAGTCTGTCCAGCAATGAAGCCAACT
ACTGGCTTGGCCTCGCAGCCAGTGTTCTTCTCCTTAAGGAAATCGGCAGC
CTCTTCCTCGGCGGATCCGCCAATCTCTCCAATCATGACAATGCCCTTGA
TCTCCTTGTCGGACAGAAACACTTTGAGGGCGTCTATGAAGCTAGTTCCG
TTAAAGGGATCCCCGCCGAGGCCAACGCAAAGAGCCTGACCCAATCCCAC
GTTGGTGGTCTGATGGACGGACTCGTAGGTCAGGGTTCCCGACCGCGAGA
CTATGCCCACCACTCCTCGCTTGTGGATATCTCCCGGCATTATTCCGATT
TTGCACTGATCCGGCGAGATGATTCCCGGACAGTTGGGTCCCAGCAGGCG
GGACTTCTCCTGGCAATTCAGCATTTGCGATATCCGCACCATATCCGCCT
GGGGAATACCCTCGGTGATGGCCACAATCAAGCCAATTTCACTCTCGATA
GCCGCGCAAATACCCTCGGCGGCGGATGGAGGTGGTATAAAGATCACCGT
GGCATCTGGCT
BO06396.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6255-PA | 1029 | CG6255-RA | 284..1026 | 761..19 | 3715 | 100 | Minus |
CG1065-PA | 987 | Scsalpha-RA | 829..905 | 213..137 | 135 | 87 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:13:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6255-RA | 1188 | CG6255-RA | 386..1128 | 761..19 | 3715 | 100 | Minus |
Scsalpha-RB | 1250 | CG1065-RB | 544..1023 | 606..127 | 615 | 75.5 | Minus |
Scsalpha-RA | 1479 | CG1065-RA | 544..1023 | 606..127 | 615 | 75.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19461939..19462681 | 19..761 | 3715 | 100 | Plus |
3L | 28110227 | 3L | 3817434..3817699 | 558..293 | 295 | 74.1 | Minus |
3L | 28110227 | 3L | 3817791..3817927 | 263..127 | 280 | 80.3 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:13:36 has no hits.
BO06396.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:23 Download gff for
BO06396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6255-PA | 284..1029 | 18..761 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:41 Download gff for
BO06396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6255-PA | 284..1029 | 18..761 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:05:50 Download gff for
BO06396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6255-RA | 386..1128 | 19..761 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:03 Download gff for
BO06396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6255-RA | 386..1128 | 19..761 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:03 Download gff for
BO06396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19461939..19462681 | 19..761 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:05:50 Download gff for
BO06396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15287661..15288403 | 19..761 | 100 | | Plus |
BO06396.5prime Sequence
803 bp (700 high quality bases) assembled on 2005-12-03
> BO06396.5prime
GAAGTTATCAGTCGACATGTCACTAAATCGAGGAAGCAAGATGCTCCTGC
GGGCGTTAACGCCCCAAATTTTGAGGCGTGGCAAGGCGGACTATGGCAAG
ACGGTGTGCAACCTGAAGATCAACAAGGCAACAAAGGTTCTAGTCCAGGG
ATTCACCGGCAAGCAGGCCACTTTCCACTCGGAGGAGTCCATAAAGTACG
GAACCAATATAGTTGGCGGTGTGAATCCCAAAAAGGGAGGTACGGAGCAT
CTGGGCAAGCCCGTATTCAAATCGGTGGCAGAAGCTGTGGAGAAGGCGAA
GCCAGATGCCACGGTGATCTTTATACCACCTCCATCCGCCGCCGAGGGTA
TTTGCGCGGCTATCGAGAGTGAAATTGGCTTGATTGTGGCCATCACCGAG
GGTATTCCCCAGGCGGATATGGTGCGGATATCGCAAATGCTGAATTGCCA
GGAGAAGTCCCGCCTGCTGGGACCCAACTGTCCGGGAATCATCTCGCCGG
ATCAGTGCAAAATCGGAATAATGCCGGGAGATATCCACAAGCGAGGAGTG
GTGGGCATAGTCTCGCGGTCGGGAACCCTGACCTACGAGTCCGTCCATCA
GACCACCAACGTGGGATTGGGTCAGGCTCTTTGCGTTGGCCTCGGCGGGG
ATCCCTTTAACGGAACTAGCTTCATAGACGCCCTCAAAGTGTTTCTGTCC
GACAAGGAGATCAAGGGCATTGTCATGATTGGAGAGATTGGCGGATCCGC
CGAGGAAGAGGCTGCCGATTTCCTTAAGGAGAAGAACACTGGCTGCGAGG
CCA
BO06396.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6255-PA | 1029 | CG6255-RA | 1..787 | 17..803 | 3935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6255-RA | 1188 | CG6255-RA | 103..889 | 17..803 | 3935 | 100 | Plus |
Scsalpha-RB | 1250 | CG1065-RB | 544..857 | 455..768 | 385 | 74.8 | Plus |
Scsalpha-RA | 1479 | CG1065-RA | 544..857 | 455..768 | 385 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19462178..19462964 | 803..17 | 3935 | 100 | Minus |
3L | 28110227 | 3L | 3817434..3817699 | 503..768 | 295 | 74.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:09:03 has no hits.
BO06396.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:24 Download gff for
BO06396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6255-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:42 Download gff for
BO06396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6255-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:42 Download gff for
BO06396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6255-RA | 97..888 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:14 Download gff for
BO06396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6255-RA | 97..888 | 9..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:14 Download gff for
BO06396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19462179..19462970 | 9..802 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:42 Download gff for
BO06396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15287901..15288692 | 9..802 | 99 | | Minus |
BO06396.complete Sequence
1060 bp (1060 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630376
> BO06396.complete
GAAGTTATCAGTCGACATGTCACTAAATCGAGGAAGCAAGATGCTCCTGC
GGGCGTTAACGCCCCAAATTTTGAGGCGTGGCAAGGCGGACTATGGCAAG
ACGGTGTGCAACCTGAAGATCAACAAGGCAACAAAGGTTCTAGTCCAGGG
ATTCACCGGCAAGCAGGCCACTTTCCACTCGGAGGAGTCCATAAAGTACG
GAACCAATATAGTTGGCGGTGTGAATCCCAAAAAGGGAGGTACGGAGCAT
CTGGGCAAGCCCGTATTCAAATCGGTGGCAGAAGCTGTGGAGAAGGCGAA
GCCAGATGCCACGGTGATCTTTATACCACCTCCATCCGCCGCCGAGGGTA
TTTGCGCGGCTATCGAGAGTGAAATTGGCTTGATTGTGGCCATCACCGAG
GGTATTCCCCAGGCGGATATGGTGCGGATATCGCAAATGCTGAATTGCCA
GGAGAAGTCCCGCCTGCTGGGACCCAACTGTCCGGGAATCATCTCGCCGG
ATCAGTGCAAAATCGGAATAATGCCGGGAGATATCCACAAGCGAGGAGTG
GTGGGCATAGTCTCGCGGTCGGGAACCCTGACCTACGAGTCCGTCCATCA
GACCACCAACGTGGGATTGGGTCAGGCTCTTTGCGTTGGCCTCGGCGGGG
ATCCCTTTAACGGAACTAGCTTCATAGACGCCCTCAAAGTGTTTCTGTCC
GACAAGGAGATCAAGGGCATTGTCATGATTGGAGAGATTGGCGGATCCGC
CGAGGAAGAGGCTGCCGATTTCCTTAAGGAGAAGAACACTGGCTGCGAGG
CCAAGCCAGTAGTTGGCTTCATTGCTGGACAGACTGCTCCACCGGGTCGT
CGAATGGGTCACGCCGGCGCCATCATTTCCGGTGGCAAGGGAGCGGCCAA
GGACAAGGTGGCCGCCCTGGAGAAAGCGGGAGTCCGTATGACCGCCAATC
CCTGCCACCTGGGCTCCACGCTCCTCGAGGAAATGATCCGCCTGAAACTG
GTGCCCAAGCCGAACAAAAAGAAGGCTCAGGCCGGGAAGAAGGCAAGCTT
TCTAGACCAT
BO06396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6255-RA | 1029 | CG6255-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Scsalpha-RB | 987 | CG1065-PB | 436..915 | 455..934 | 615 | 75.2 | Plus |
Scsalpha-RA | 987 | CG1065-PA | 436..915 | 455..934 | 615 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6255-RA | 1188 | CG6255-RA | 103..1128 | 17..1042 | 5130 | 100 | Plus |
Scsalpha-RB | 1250 | CG1065-RB | 544..1023 | 455..934 | 615 | 75.2 | Plus |
Scsalpha-RA | 1479 | CG1065-RA | 544..1023 | 455..934 | 615 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19461939..19462964 | 1042..17 | 5130 | 100 | Minus |
3L | 28110227 | 3L | 3817434..3817699 | 503..768 | 295 | 74.1 | Plus |
3L | 28110227 | 3L | 3817791..3817927 | 798..934 | 280 | 80.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:59:40 has no hits.
BO06396.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:01 Download gff for
BO06396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6255-RA | 1..1029 | 17..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:10 Download gff for
BO06396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6255-RA | 97..1128 | 9..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:43 Download gff for
BO06396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6255-RA | 103..1128 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:02 Download gff for
BO06396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6255-RA | 97..1128 | 9..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:31 Download gff for
BO06396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6255-RA | 103..1128 | 17..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:31 Download gff for
BO06396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19461937..19462964 | 17..1044 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:43 Download gff for
BO06396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15287659..15288686 | 17..1044 | 99 | | Minus |
BO06396.pep Sequence
Translation from 16 to 1060
> BO06396.pep
MSLNRGSKMLLRALTPQILRRGKADYGKTVCNLKINKATKVLVQGFTGKQ
ATFHSEESIKYGTNIVGGVNPKKGGTEHLGKPVFKSVAEAVEKAKPDATV
IFIPPPSAAEGICAAIESEIGLIVAITEGIPQADMVRISQMLNCQEKSRL
LGPNCPGIISPDQCKIGIMPGDIHKRGVVGIVSRSGTLTYESVHQTTNVG
LGQALCVGLGGDPFNGTSFIDALKVFLSDKEIKGIVMIGEIGGSAEEEAA
DFLKEKNTGCEAKPVVGFIAGQTAPPGRRMGHAGAIISGGKGAAKDKVAA
LEKAGVRMTANPCHLGSTLLEEMIRLKLVPKPNKKKAQAGKKASFLDH
BO06396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6255-PA | 342 | CG6255-PA | 1..342 | 1..342 | 1751 | 100 | Plus |
Scsalpha-PB | 328 | CG1065-PB | 20..328 | 21..329 | 1112 | 67.6 | Plus |
Scsalpha-PA | 328 | CG1065-PA | 20..328 | 21..329 | 1112 | 67.6 | Plus |
ATPCL-PF | 1095 | CG8322-PF | 546..778 | 82..305 | 214 | 30 | Plus |
ATPCL-PG | 1096 | CG8322-PG | 547..779 | 82..305 | 214 | 30 | Plus |