Clone BO06396 Report

Search the DGRC for BO06396

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG6255-RA
Protein status:BO06396.pep: validated full length
Sequenced Size:1060

Clone Sequence Records

BO06396.3prime Sequence

761 bp (647 high quality bases) assembled on 2005-12-03

> BO06396.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCCCGGCCTGAGCCTTCTTTTTGTTCG
GCTTGGGCACCAGTTTCAGGCGGATCATTTCCTCGAGGAGCGTGGAGCCC
AGGTGGCAGGGATTGGCGGTCATACGGACTCCCGCTTTCTCCAGGGCGGC
CACCTTGTCCTTGGCCGCTCCCTTGCCACCGGAAATGATGGCGCCGGCGT
GACCCATTCGACGACCCGGTGGAGCAGTCTGTCCAGCAATGAAGCCAACT
ACTGGCTTGGCCTCGCAGCCAGTGTTCTTCTCCTTAAGGAAATCGGCAGC
CTCTTCCTCGGCGGATCCGCCAATCTCTCCAATCATGACAATGCCCTTGA
TCTCCTTGTCGGACAGAAACACTTTGAGGGCGTCTATGAAGCTAGTTCCG
TTAAAGGGATCCCCGCCGAGGCCAACGCAAAGAGCCTGACCCAATCCCAC
GTTGGTGGTCTGATGGACGGACTCGTAGGTCAGGGTTCCCGACCGCGAGA
CTATGCCCACCACTCCTCGCTTGTGGATATCTCCCGGCATTATTCCGATT
TTGCACTGATCCGGCGAGATGATTCCCGGACAGTTGGGTCCCAGCAGGCG
GGACTTCTCCTGGCAATTCAGCATTTGCGATATCCGCACCATATCCGCCT
GGGGAATACCCTCGGTGATGGCCACAATCAAGCCAATTTCACTCTCGATA
GCCGCGCAAATACCCTCGGCGGCGGATGGAGGTGGTATAAAGATCACCGT
GGCATCTGGCT

BO06396.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6255-PA 1029 CG6255-RA 284..1026 761..19 3715 100 Minus
CG1065-PA 987 Scsalpha-RA 829..905 213..137 135 87 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6255-RA 1188 CG6255-RA 386..1128 761..19 3715 100 Minus
Scsalpha-RB 1250 CG1065-RB 544..1023 606..127 615 75.5 Minus
Scsalpha-RA 1479 CG1065-RA 544..1023 606..127 615 75.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19461939..19462681 19..761 3715 100 Plus
3L 28110227 3L 3817434..3817699 558..293 295 74.1 Minus
3L 28110227 3L 3817791..3817927 263..127 280 80.3 Minus
Blast to na_te.dros performed on 2015-02-09 19:13:36 has no hits.

BO06396.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:23 Download gff for BO06396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6255-PA 284..1029 18..761 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:41 Download gff for BO06396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6255-PA 284..1029 18..761 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:05:50 Download gff for BO06396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 386..1128 19..761 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:03 Download gff for BO06396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 386..1128 19..761 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:03 Download gff for BO06396.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19461939..19462681 19..761 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:05:50 Download gff for BO06396.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15287661..15288403 19..761 100   Plus

BO06396.5prime Sequence

803 bp (700 high quality bases) assembled on 2005-12-03

> BO06396.5prime
GAAGTTATCAGTCGACATGTCACTAAATCGAGGAAGCAAGATGCTCCTGC
GGGCGTTAACGCCCCAAATTTTGAGGCGTGGCAAGGCGGACTATGGCAAG
ACGGTGTGCAACCTGAAGATCAACAAGGCAACAAAGGTTCTAGTCCAGGG
ATTCACCGGCAAGCAGGCCACTTTCCACTCGGAGGAGTCCATAAAGTACG
GAACCAATATAGTTGGCGGTGTGAATCCCAAAAAGGGAGGTACGGAGCAT
CTGGGCAAGCCCGTATTCAAATCGGTGGCAGAAGCTGTGGAGAAGGCGAA
GCCAGATGCCACGGTGATCTTTATACCACCTCCATCCGCCGCCGAGGGTA
TTTGCGCGGCTATCGAGAGTGAAATTGGCTTGATTGTGGCCATCACCGAG
GGTATTCCCCAGGCGGATATGGTGCGGATATCGCAAATGCTGAATTGCCA
GGAGAAGTCCCGCCTGCTGGGACCCAACTGTCCGGGAATCATCTCGCCGG
ATCAGTGCAAAATCGGAATAATGCCGGGAGATATCCACAAGCGAGGAGTG
GTGGGCATAGTCTCGCGGTCGGGAACCCTGACCTACGAGTCCGTCCATCA
GACCACCAACGTGGGATTGGGTCAGGCTCTTTGCGTTGGCCTCGGCGGGG
ATCCCTTTAACGGAACTAGCTTCATAGACGCCCTCAAAGTGTTTCTGTCC
GACAAGGAGATCAAGGGCATTGTCATGATTGGAGAGATTGGCGGATCCGC
CGAGGAAGAGGCTGCCGATTTCCTTAAGGAGAAGAACACTGGCTGCGAGG
CCA

BO06396.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6255-PA 1029 CG6255-RA 1..787 17..803 3935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6255-RA 1188 CG6255-RA 103..889 17..803 3935 100 Plus
Scsalpha-RB 1250 CG1065-RB 544..857 455..768 385 74.8 Plus
Scsalpha-RA 1479 CG1065-RA 544..857 455..768 385 74.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19462178..19462964 803..17 3935 100 Minus
3L 28110227 3L 3817434..3817699 503..768 295 74.1 Plus
Blast to na_te.dros performed on 2015-02-13 12:09:03 has no hits.

BO06396.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:24 Download gff for BO06396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6255-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:42 Download gff for BO06396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6255-PA 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:42 Download gff for BO06396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 97..888 9..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:14 Download gff for BO06396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 97..888 9..802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:14 Download gff for BO06396.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19462179..19462970 9..802 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:42 Download gff for BO06396.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15287901..15288692 9..802 99   Minus

BO06396.complete Sequence

1060 bp (1060 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630376

> BO06396.complete
GAAGTTATCAGTCGACATGTCACTAAATCGAGGAAGCAAGATGCTCCTGC
GGGCGTTAACGCCCCAAATTTTGAGGCGTGGCAAGGCGGACTATGGCAAG
ACGGTGTGCAACCTGAAGATCAACAAGGCAACAAAGGTTCTAGTCCAGGG
ATTCACCGGCAAGCAGGCCACTTTCCACTCGGAGGAGTCCATAAAGTACG
GAACCAATATAGTTGGCGGTGTGAATCCCAAAAAGGGAGGTACGGAGCAT
CTGGGCAAGCCCGTATTCAAATCGGTGGCAGAAGCTGTGGAGAAGGCGAA
GCCAGATGCCACGGTGATCTTTATACCACCTCCATCCGCCGCCGAGGGTA
TTTGCGCGGCTATCGAGAGTGAAATTGGCTTGATTGTGGCCATCACCGAG
GGTATTCCCCAGGCGGATATGGTGCGGATATCGCAAATGCTGAATTGCCA
GGAGAAGTCCCGCCTGCTGGGACCCAACTGTCCGGGAATCATCTCGCCGG
ATCAGTGCAAAATCGGAATAATGCCGGGAGATATCCACAAGCGAGGAGTG
GTGGGCATAGTCTCGCGGTCGGGAACCCTGACCTACGAGTCCGTCCATCA
GACCACCAACGTGGGATTGGGTCAGGCTCTTTGCGTTGGCCTCGGCGGGG
ATCCCTTTAACGGAACTAGCTTCATAGACGCCCTCAAAGTGTTTCTGTCC
GACAAGGAGATCAAGGGCATTGTCATGATTGGAGAGATTGGCGGATCCGC
CGAGGAAGAGGCTGCCGATTTCCTTAAGGAGAAGAACACTGGCTGCGAGG
CCAAGCCAGTAGTTGGCTTCATTGCTGGACAGACTGCTCCACCGGGTCGT
CGAATGGGTCACGCCGGCGCCATCATTTCCGGTGGCAAGGGAGCGGCCAA
GGACAAGGTGGCCGCCCTGGAGAAAGCGGGAGTCCGTATGACCGCCAATC
CCTGCCACCTGGGCTCCACGCTCCTCGAGGAAATGATCCGCCTGAAACTG
GTGCCCAAGCCGAACAAAAAGAAGGCTCAGGCCGGGAAGAAGGCAAGCTT
TCTAGACCAT

BO06396.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6255-RA 1029 CG6255-PA 1..1026 17..1042 5130 100 Plus
Scsalpha-RB 987 CG1065-PB 436..915 455..934 615 75.2 Plus
Scsalpha-RA 987 CG1065-PA 436..915 455..934 615 75.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6255-RA 1188 CG6255-RA 103..1128 17..1042 5130 100 Plus
Scsalpha-RB 1250 CG1065-RB 544..1023 455..934 615 75.2 Plus
Scsalpha-RA 1479 CG1065-RA 544..1023 455..934 615 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19461939..19462964 1042..17 5130 100 Minus
3L 28110227 3L 3817434..3817699 503..768 295 74.1 Plus
3L 28110227 3L 3817791..3817927 798..934 280 80.3 Plus
Blast to na_te.dros performed on 2014-11-27 14:59:40 has no hits.

BO06396.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:01 Download gff for BO06396.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 1..1029 17..1043 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:10 Download gff for BO06396.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 97..1128 9..1042 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:43 Download gff for BO06396.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 103..1128 17..1044 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:02 Download gff for BO06396.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 97..1128 9..1042 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:31 Download gff for BO06396.complete
Subject Subject Range Query Range Percent Splice Strand
CG6255-RA 103..1128 17..1044 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:31 Download gff for BO06396.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19461937..19462964 17..1044 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:43 Download gff for BO06396.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15287659..15288686 17..1044 99   Minus

BO06396.pep Sequence

Translation from 16 to 1060

> BO06396.pep
MSLNRGSKMLLRALTPQILRRGKADYGKTVCNLKINKATKVLVQGFTGKQ
ATFHSEESIKYGTNIVGGVNPKKGGTEHLGKPVFKSVAEAVEKAKPDATV
IFIPPPSAAEGICAAIESEIGLIVAITEGIPQADMVRISQMLNCQEKSRL
LGPNCPGIISPDQCKIGIMPGDIHKRGVVGIVSRSGTLTYESVHQTTNVG
LGQALCVGLGGDPFNGTSFIDALKVFLSDKEIKGIVMIGEIGGSAEEEAA
DFLKEKNTGCEAKPVVGFIAGQTAPPGRRMGHAGAIISGGKGAAKDKVAA
LEKAGVRMTANPCHLGSTLLEEMIRLKLVPKPNKKKAQAGKKASFLDH

BO06396.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6255-PA 342 CG6255-PA 1..342 1..342 1751 100 Plus
Scsalpha-PB 328 CG1065-PB 20..328 21..329 1112 67.6 Plus
Scsalpha-PA 328 CG1065-PA 20..328 21..329 1112 67.6 Plus
ATPCL-PF 1095 CG8322-PF 546..778 82..305 214 30 Plus
ATPCL-PG 1096 CG8322-PG 547..779 82..305 214 30 Plus