Clone Sequence Records
BO06401.3prime Sequence
916 bp (686 high quality bases) assembled on 2005-12-03
> BO06401.3prime
ATGGTCTAGAAAGCTTGCTTTGCGCGTTTTCTTCATCGAGAAACCGGTGC
CGTGGAAGCTCTCCGCATCGGAAGCGTCCGCATTGCCAGCTACGGCATCA
TCTTCTTGGCTTCTATCACTGATAGGCCGAATGTTGCGATCGAAACGGAT
GAGTCCAAACTGGAAATCATAGTCTGGAACGCCGCGGGCTAGCACCTTCT
TAACGACCGGCGTTTCCAACTGGCTTTCCTTCTTCTTCTTACCATCGAGA
CGTACGCCGGAACCCTTGAAGGTCTCCACGACCTCTTCGAGTATGGCGTT
GGTGGCTCCAGCGATTTCGCCGCCAACAGTTCCAGCAGCACCCTGCTGCC
CAGAGCCCGATGCCTGCGTTTCGGAGTGATCCTTGTAGCCGACTGGCGCC
TCAAATTCCACATTCATGTCGCACTCAATGATGCTGACTGCATTGCCGGG
CTTTGTCTCCAGGACACACAGTTCGTAGACCTTCTTGTTGTACTTAATGG
CTATGACATCGCCCCTGGTGAGGCAGGCAAAGTTGCGCAATGCATTCTCC
AGCACCGCCTTGGGATTGGTGATGTCCAGGAAGTCGGTGCTGTGCGGTTG
AAACTTTGAGAAGGTGGCCACCGGCAGCGAGACACTCTCGATGTTGAGTA
TGTCGCCCTCACCCAACAGCAGGTTTTCCATCATCCAGTGGGGTAGATAG
CATTTGCCCTCGTCGGCCACAAACTCGAGTACGCCGGCATGCGAGGATCG
CGATTTCTTGACGTTGGTCAGCTTGAACAGCATTGGATACTCGACATTCA
GGCGGGTGAGCGTGTCCAGCGCCGAAGGAGGCATAATAATCTTTCCGCCC
TTTTTCACGTCCGTTCGCTCGTTTCCTGGCAACATGGATACGGAGAAGCA
CTTGTAGTTGGCATGA
BO06401.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6233-PA | 951 | Ufd1-like-RA | 51..948 | 916..19 | 4415 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ufd1-like-RA | 1194 | CG6233-RA | 219..1116 | 916..19 | 4445 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11122044..11122864 | 19..839 | 4090 | 99.9 | Plus |
| 3L | 28110227 | 3L | 11122922..11122998 | 840..916 | 355 | 97.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:45:06 has no hits.
BO06401.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:25 Download gff for
BO06401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6233-PA | 52..951 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:43 Download gff for
BO06401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6233-PA | 52..951 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:01 Download gff for
BO06401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 220..1126 | 7..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:24 Download gff for
BO06401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 220..1126 | 7..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:24 Download gff for
BO06401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11122034..11122864 | 7..839 | 99 | <- | Plus |
| 3L | 11122922..11122997 | 840..915 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:01 Download gff for
BO06401.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11115134..11115964 | 7..839 | 99 | <- | Plus |
| arm_3L | 11116022..11116097 | 840..915 | 97 | | Plus |
BO06401.5prime Sequence
712 bp (711 high quality bases) assembled on 2005-12-03
> BO06401.5prime
GAAGTTATCAGTCGACATGTTCCACTTCAGCGGCTTCAACATGATGTTCC
CGGAGGGACGCAATTTTCATGCCAACTACAAGTGCTTCTCCGTATCCATG
TTGCCAGGAAACGAGCGAACCGACGTGGAAAAGGGCGGAAAGATTATTAT
GCCTCCCTCGGCGCTGGACACGCTCACCCGCCTGAATGTCGAGTATCCAA
TGCTGTTCAAGCTGACCAACGTCAAGAAATCGCGATCCTCGCATGCCGGC
GTACTCGAGTTTGTGGCCGACGAGGGCAAATGCTATCTACCCCACTGGAT
GATGGAAAACCTGCTGTTGGGTGAGGGCGACATACTCAACATCGAGAGTG
TCTCGCTGCCGGTGGCCACCTTCTCAAAGTTTCAACCGCACAGCACCGAC
TTCCTGGACATCACCAATCCCAAGGCGGTGCTGGAGAATGCATTGCGCAA
CTTTGCCTGCCTCACCAGGGGCGATGTCATAGCCATTAAGTACAACAAGA
AGGTCTACGAACTGTGTGTCCTGGAGACAAAGCCCGGCAATGCAGTCAGC
ATCATTGAGTGCGACATGAATGTGGAATTTGAGGCGCCAGTCGGCTACAA
GGATCACTCCGAAACGCAGGCATCGGGCTCTGGGCAGCAGGGTGCTGCTG
GAACTGTTGGCGGCGAAATCGCTGGAGCCACCAACGCCATACTCGAAGAG
GTCGTGGAGACC
BO06401.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6233-PA | 951 | Ufd1-like-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ufd1-like-RA | 1194 | CG6233-RA | 169..864 | 17..712 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11122296..11122864 | 712..144 | 2845 | 100 | Minus |
| 3L | 28110227 | 3L | 11122922..11123048 | 143..17 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:09:08 has no hits.
BO06401.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:26 Download gff for
BO06401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6233-PA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:45 Download gff for
BO06401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6233-PA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:44 Download gff for
BO06401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 163..864 | 9..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:16 Download gff for
BO06401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 163..864 | 9..712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:16 Download gff for
BO06401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11122296..11122864 | 144..712 | 100 | <- | Minus |
| 3L | 11122922..11123054 | 9..143 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:44 Download gff for
BO06401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11115396..11115964 | 144..712 | 100 | <- | Minus |
| arm_3L | 11116022..11116154 | 9..143 | 97 | | Minus |
BO06401.complete Sequence
982 bp (982 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630377
> BO06401.complete
GAAGTTATCAGTCGACATGTTCCACTTCAGCGGCTTCAACATGATGTTCC
CGGAGGGACGCAATTTTCATGCCAACTACAAGTGCTTCTCCGTATCCATG
TTGCCAGGAAACGAGCGAACCGACGTGGAAAAGGGCGGAAAGATTATTAT
GCCTCCCTCGGCGCTGGACACGCTCACCCGCCTGAATGTCGAGTATCCAA
TGCTGTTCAAGCTGACCAACGTCAAGAAATCGCGATCCTCGCATGCCGGC
GTACTCGAGTTTGTGGCCGACGAGGGCAAATGCTATCTACCCCACTGGAT
GATGGAAAACCTGCTGTTGGGTGAGGGCGACATACTCAACATCGAGAGTG
TCTCGCTGCCGGTGGCCACCTTCTCAAAGTTTCAACCGCACAGCACCGAC
TTCCTGGACATCACCAATCCCAAGGCGGTGCTGGAGAATGCATTGCGCAA
CTTTGCCTGCCTCACCAGGGGCGATGTCATAGCCATTAAGTACAACAAGA
AGGTCTACGAACTGTGTGTCCTGGAGACAAAGCCCGGCAATGCAGTCAGC
ATCATTGAGTGCGACATGAATGTGGAATTTGAGGCGCCAGTCGGCTACAA
GGATCACTCCGAAACGCAGGCATCGGGCTCTGGGCAGCAGGGTGCTGCTG
GAACTGTTGGCGGCGAAATCGCTGGAGCCACCAACGCCATACTCGAAGAG
GTCGTGGAGACCTTCAAGGGTTCCGGCGTACGTCTCGATGGTAAGAAGAA
GAAGGAAAGCCAGTTGGAAACGCCGGTCGTTAAGAAGGTGCTAGCCCGCG
GCGTTCCAGACTATGATTTCCAGTTTGGACTCATCCGTTTCGATCGCAAC
ATTCGGCCTATCAGTGATAGAAGCCAAGAAGATGATGCCGTAGCTGGCAA
TGCGGACGCTTCCGATGCGGAGAGCTTCCACGGCACCGGTTTCTCGATGA
AGAAAACGCGCAAAGCAAGCTTTCTAGACCAT
BO06401.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ufd1-like-RA | 951 | CG6233-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ufd1-like-RA | 1194 | CG6233-RA | 169..1116 | 17..964 | 4740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11122044..11122864 | 964..144 | 4105 | 100 | Minus |
| 3L | 28110227 | 3L | 11122922..11123048 | 143..17 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:55:36 has no hits.
BO06401.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:03 Download gff for
BO06401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 1..951 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:12 Download gff for
BO06401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 148..1111 | 9..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:06 Download gff for
BO06401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 174..1116 | 22..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:03 Download gff for
BO06401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 148..1111 | 9..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:58 Download gff for
BO06401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ufd1-like-RA | 174..1116 | 22..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:58 Download gff for
BO06401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11122040..11122864 | 144..966 | 99 | <- | Minus |
| 3L | 11122922..11123043 | 22..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:06 Download gff for
BO06401.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11115140..11115964 | 144..966 | 99 | <- | Minus |
| arm_3L | 11116022..11116143 | 22..143 | 100 | | Minus |
BO06401.pep Sequence
Translation from 16 to 982
> BO06401.pep
MFHFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSAL
DTLTRLNVEYPMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLL
LGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLT
RGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKDHSET
QASGSGQQGAAGTVGGEIAGATNAILEEVVETFKGSGVRLDGKKKKESQL
ETPVVKKVLARGVPDYDFQFGLIRFDRNIRPISDRSQEDDAVAGNADASD
AESFHGTGFSMKKTRKASFLDH
BO06401.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ufd1-like-PA | 316 | CG6233-PA | 1..316 | 1..316 | 1643 | 100 | Plus |
