Clone BO06402 Report

Search the DGRC for BO06402

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG11842-RA
Protein status:BO06402.pep: validated full length
Sequenced Size:991

Clone Sequence Records

BO06402.3prime Sequence

802 bp (796 high quality bases) assembled on 2005-12-03

> BO06402.3prime
ATGGTCTAGAAAGCTTGCATTTTTGGCCAGCTGCTGCTTAATCCAGTCCA
GGTAGAAGTGAACCCGTGTGTACATCGCGGGAAGATCGGGTGTGTCGCAG
GCCACTCCGATGGATGTGATACCCATCACATGGTACATGCAGGGGTAGTC
CATGTGATAGATGAGCACCGGTCCGCCGGAATCGCCGTTGCAGGTGTCCT
TGTGCTCGTTGGACCCGATGCACAGTTGGGTGGTAGCATTATATCCCTCG
GGTAGCTCATCATTTCTATCCGCCGTAATCCTGCAGCGCGTTCCATAGTT
GTAGAGCTTCACTTTCTGTAGCTTTTTGTTCTCCGTCCTGGGCACGATCT
CCAGCTGACCCCAACCGATGGCTATGAAGGAGGTCCCCAATCGCCCATCG
TCGAAGGGTAGACAGGCCGGATGCTTGTAATCGTTGAAGGTTACGGGTCG
ACTCAATCGTACCACGGAAATGTCGTTGTAAATCGCCGGGTAGCTAAATT
CGGGGTGCGCGGTGAAGTCCTTCACATCGAAGTCCTCCGGATCCGCATCG
TCGTTGTTGGTGTCGAATTCCAGGTCCCCGAGGCGCGCGATGTTCACTGA
TCCTTGTGGTGAGTAGTGGCAATGCGCTGCGGTGAGCACATGTCTGTCGC
TGATAAGTGTTCCGCCACAGAACCATTCCACCTCGCCATTCTCATCTTTG
TGTCCCAGGCGCGCAGCATGCGGGAACTCCTTGGGCACGGCGGGTCCTCC
GCCGATGATGAGCGGCGCATAGCTAGTGCATTTGTCCAGGGTCTTGTAGA
TA

BO06402.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11842-PA 960 CG11842-RA 174..957 802..19 3920 100 Minus
CG8299-PA 783 CG8299-RA 615..647 202..170 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11842-RA 1118 CG11842-RA 195..978 802..19 3920 100 Minus
CG11841-RA 1076 CG11841-RA 756..869 229..116 225 80.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29053188..29053773 604..19 2930 100 Minus
3R 32079331 3R 29052925..29053122 802..605 990 100 Minus
3R 32079331 3R 29051947..29052060 229..116 225 79.8 Minus
Blast to na_te.dros performed on 2015-02-13 06:09:46 has no hits.

BO06402.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:28 Download gff for BO06402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11842-PA 175..960 18..801 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:46 Download gff for BO06402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11842-PA 175..960 18..801 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:57 Download gff for BO06402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 196..978 19..801 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:04 Download gff for BO06402.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 196..978 19..801 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:04 Download gff for BO06402.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29052926..29053122 605..801 100 -> Minus
3R 29053188..29053773 19..604 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:57 Download gff for BO06402.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24878648..24878844 605..801 100 -> Minus
arm_3R 24878910..24879495 19..604 100   Minus

BO06402.5prime Sequence

799 bp (772 high quality bases) assembled on 2005-12-03

> BO06402.5prime
GAAGTTATCAGTCGACATGAGCAGCGCGATCTTCGCCAAGATTGTCCAGC
TGGGAGCAGTATTGCTGGTTTCATTCGTCGCATGGGCGTCAGCTCAGGAT
TCGGATATAGCCAGGACGTGCACTGCCTACAAGAGAAGCGTTTGGGAGGA
GACGTCCGAGTTCAGCTTTCTGATCGAGAACGCTCCGATTATCTACAAGA
CCCTGGACAAATGCACTAGCTATGCGCCGCTCATCATCGGCGGAGGACCC
GCCGTGCCCAAGGAGTTCCCGCATGCTGCGCGCCTGGGACACAAAGATGA
GAATGGCGAGGTGGAATGGTTCTGTGGCGGAACACTTATCAGCGACAGAC
ATGTGCTCACCGCAGCGCATTGCCACTACTCACCACAAGGATCAGTGAAC
ATCGCGCGCCTCGGGGACCTGGAATTCGACACCAACAACGACGATGCGGA
TCCGGAGGACTTCGATGTGAAGGACTTCACCGCGCACCCCGAATTTAGCT
ACCCGGCGATTTACAACGACATTTCCGTGGTACGATTGAGTCGACCCGTA
ACCTTCAACGATTACAAGCATCCGGCCTGTCTACCCTTCGACGATGGGCG
ATTGGGGACCTCCTTCATAGCCATCGGTTGGGGTCAGCTGGAGATCGTGC
CCAGGACGGAGAACAAAAAGCTACAGAAAGTGAAGCTCTACAACTATGGA
ACGCGCTGCAGGATTACGGCGGATAGAAATGATGAGCTACCCGAGGGATA
TAATGCTACCACCCAACTGTGCATCGGGTCCAACGAGCACAAGGACACC

BO06402.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11842-PA 960 CG11842-RA 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11842-RA 1118 CG11842-RA 22..804 17..799 3915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29053188..29053599 388..799 2060 100 Plus
3R 32079331 3R 29052852..29053122 117..387 1355 100 Plus
3R 32079331 3R 29052701..29052800 17..116 500 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:07:47 has no hits.

BO06402.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:28 Download gff for BO06402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11842-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:47 Download gff for BO06402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11842-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:03 Download gff for BO06402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 16..804 9..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:37 Download gff for BO06402.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 16..804 9..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:37 Download gff for BO06402.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29052695..29052800 9..116 96 -> Plus
3R 29052852..29053122 117..387 100 -> Plus
3R 29053188..29053599 388..799 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:03 Download gff for BO06402.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24878417..24878522 9..116 96 -> Plus
arm_3R 24878574..24878844 117..387 100 -> Plus
arm_3R 24878910..24879321 388..799 100   Plus

BO06402.complete Sequence

991 bp (991 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630378

> BO06402.complete
GAAGTTATCAGTCGACATGAGCAGCGCGATCTTCGCCAAGATTGTCCAGC
TGGGAGCAGTATTGCTGGTTTCATTCGTCGCATGGGCGTCAGCTCAGGAT
TCGGATATAGCCAGGACGTGCACTGCCTACAAGAGAAGCGTTTGGGAGGA
GACGTCCGAGTTCAGCTTTCTGATCGAGAACGCTCCGATTATCTACAAGA
CCCTGGACAAATGCACTAGCTATGCGCCGCTCATCATCGGCGGAGGACCC
GCCGTGCCCAAGGAGTTCCCGCATGCTGCGCGCCTGGGACACAAAGATGA
GAATGGCGAGGTGGAATGGTTCTGTGGCGGAACACTTATCAGCGACAGAC
ATGTGCTCACCGCAGCGCATTGCCACTACTCACCACAAGGATCAGTGAAC
ATCGCGCGCCTCGGGGACCTGGAATTCGACACCAACAACGACGATGCGGA
TCCGGAGGACTTCGATGTGAAGGACTTCACCGCGCACCCCGAATTTAGCT
ACCCGGCGATTTACAACGACATTTCCGTGGTACGATTGAGTCGACCCGTA
ACCTTCAACGATTACAAGCATCCGGCCTGTCTACCCTTCGACGATGGGCG
ATTGGGGACCTCCTTCATAGCCATCGGTTGGGGTCAGCTGGAGATCGTGC
CCAGGACGGAGAACAAAAAGCTACAGAAAGTGAAGCTCTACAACTATGGA
ACGCGCTGCAGGATTACGGCGGATAGAAATGATGAGCTACCCGAGGGATA
TAATGCTACCACCCAACTGTGCATCGGGTCCAACGAGCACAAGGACACCT
GCAACGGCGATTCCGGCGGACCGGTGCTCATCTATCACATGGACTACCCC
TGCATGTACCATGTGATGGGTATCACATCCATCGGAGTGGCCTGCGACAC
ACCCGATCTTCCCGCGATGTACACACGGGTTCACTTCTACCTGGACTGGA
TTAAGCAGCAGCTGGCCAAAAATGCAAGCTTTCTAGACCAT

BO06402.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11842-RA 960 CG11842-PA 1..957 17..973 4785 100 Plus
CG11841-RA 960 CG11841-PA 741..854 763..876 225 79.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11842-RA 1118 CG11842-RA 22..978 17..973 4785 100 Plus
CG11841-RA 1076 CG11841-RA 756..869 763..876 225 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29053188..29053773 388..973 2930 100 Plus
3R 32079331 3R 29052852..29053122 117..387 1355 100 Plus
3R 32079331 3R 29052701..29052800 17..116 500 100 Plus
3R 32079331 3R 29051947..29052060 763..876 225 79.8 Plus
Blast to na_te.dros performed on 2014-11-27 11:05:16 has no hits.

BO06402.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:34 Download gff for BO06402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 1..960 17..974 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:01 Download gff for BO06402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 16..978 9..973 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:15:11 Download gff for BO06402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 22..978 17..975 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:34 Download gff for BO06402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 16..978 9..973 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:30 Download gff for BO06402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11842-RA 22..978 17..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:30 Download gff for BO06402.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29052852..29053122 117..387 100 -> Plus
3R 29052701..29052800 17..116 100 -> Plus
3R 29053188..29053773 388..975 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:15:11 Download gff for BO06402.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24878423..24878522 17..116 100 -> Plus
arm_3R 24878574..24878844 117..387 100 -> Plus
arm_3R 24878910..24879495 388..975 99   Plus

BO06402.pep Sequence

Translation from 16 to 991

> BO06402.pep
MSSAIFAKIVQLGAVLLVSFVAWASAQDSDIARTCTAYKRSVWEETSEFS
FLIENAPIIYKTLDKCTSYAPLIIGGGPAVPKEFPHAARLGHKDENGEVE
WFCGGTLISDRHVLTAAHCHYSPQGSVNIARLGDLEFDTNNDDADPEDFD
VKDFTAHPEFSYPAIYNDISVVRLSRPVTFNDYKHPACLPFDDGRLGTSF
IAIGWGQLEIVPRTENKKLQKVKLYNYGTRCRITADRNDELPEGYNATTQ
LCIGSNEHKDTCNGDSGGPVLIYHMDYPCMYHVMGITSIGVACDTPDLPA
MYTRVHFYLDWIKQQLAKNASFLDH

BO06402.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11842-PA 319 CG11842-PA 1..319 1..319 1731 100 Plus
CG11841-PA 319 CG11841-PA 34..316 35..318 967 61.6 Plus
CG11843-PB 316 CG11843-PB 2..314 8..317 814 50 Plus
CG11843-PA 316 CG11843-PA 2..314 8..317 814 50 Plus
CG4927-PC 362 CG4927-PC 103..356 71..313 455 38.5 Plus