Clone Sequence Records
BO06402.3prime Sequence
802 bp (796 high quality bases) assembled on 2005-12-03
> BO06402.3prime
ATGGTCTAGAAAGCTTGCATTTTTGGCCAGCTGCTGCTTAATCCAGTCCA
GGTAGAAGTGAACCCGTGTGTACATCGCGGGAAGATCGGGTGTGTCGCAG
GCCACTCCGATGGATGTGATACCCATCACATGGTACATGCAGGGGTAGTC
CATGTGATAGATGAGCACCGGTCCGCCGGAATCGCCGTTGCAGGTGTCCT
TGTGCTCGTTGGACCCGATGCACAGTTGGGTGGTAGCATTATATCCCTCG
GGTAGCTCATCATTTCTATCCGCCGTAATCCTGCAGCGCGTTCCATAGTT
GTAGAGCTTCACTTTCTGTAGCTTTTTGTTCTCCGTCCTGGGCACGATCT
CCAGCTGACCCCAACCGATGGCTATGAAGGAGGTCCCCAATCGCCCATCG
TCGAAGGGTAGACAGGCCGGATGCTTGTAATCGTTGAAGGTTACGGGTCG
ACTCAATCGTACCACGGAAATGTCGTTGTAAATCGCCGGGTAGCTAAATT
CGGGGTGCGCGGTGAAGTCCTTCACATCGAAGTCCTCCGGATCCGCATCG
TCGTTGTTGGTGTCGAATTCCAGGTCCCCGAGGCGCGCGATGTTCACTGA
TCCTTGTGGTGAGTAGTGGCAATGCGCTGCGGTGAGCACATGTCTGTCGC
TGATAAGTGTTCCGCCACAGAACCATTCCACCTCGCCATTCTCATCTTTG
TGTCCCAGGCGCGCAGCATGCGGGAACTCCTTGGGCACGGCGGGTCCTCC
GCCGATGATGAGCGGCGCATAGCTAGTGCATTTGTCCAGGGTCTTGTAGA
TA
BO06402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-PA | 960 | CG11842-RA | 174..957 | 802..19 | 3920 | 100 | Minus |
CG8299-PA | 783 | CG8299-RA | 615..647 | 202..170 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-RA | 1118 | CG11842-RA | 195..978 | 802..19 | 3920 | 100 | Minus |
CG11841-RA | 1076 | CG11841-RA | 756..869 | 229..116 | 225 | 80.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29053188..29053773 | 604..19 | 2930 | 100 | Minus |
3R | 32079331 | 3R | 29052925..29053122 | 802..605 | 990 | 100 | Minus |
3R | 32079331 | 3R | 29051947..29052060 | 229..116 | 225 | 79.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:09:46 has no hits.
BO06402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:28 Download gff for
BO06402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-PA | 175..960 | 18..801 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:46 Download gff for
BO06402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-PA | 175..960 | 18..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:57 Download gff for
BO06402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 196..978 | 19..801 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:04 Download gff for
BO06402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 196..978 | 19..801 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:04 Download gff for
BO06402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29052926..29053122 | 605..801 | 100 | -> | Minus |
3R | 29053188..29053773 | 19..604 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:57 Download gff for
BO06402.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24878648..24878844 | 605..801 | 100 | -> | Minus |
arm_3R | 24878910..24879495 | 19..604 | 100 | | Minus |
BO06402.5prime Sequence
799 bp (772 high quality bases) assembled on 2005-12-03
> BO06402.5prime
GAAGTTATCAGTCGACATGAGCAGCGCGATCTTCGCCAAGATTGTCCAGC
TGGGAGCAGTATTGCTGGTTTCATTCGTCGCATGGGCGTCAGCTCAGGAT
TCGGATATAGCCAGGACGTGCACTGCCTACAAGAGAAGCGTTTGGGAGGA
GACGTCCGAGTTCAGCTTTCTGATCGAGAACGCTCCGATTATCTACAAGA
CCCTGGACAAATGCACTAGCTATGCGCCGCTCATCATCGGCGGAGGACCC
GCCGTGCCCAAGGAGTTCCCGCATGCTGCGCGCCTGGGACACAAAGATGA
GAATGGCGAGGTGGAATGGTTCTGTGGCGGAACACTTATCAGCGACAGAC
ATGTGCTCACCGCAGCGCATTGCCACTACTCACCACAAGGATCAGTGAAC
ATCGCGCGCCTCGGGGACCTGGAATTCGACACCAACAACGACGATGCGGA
TCCGGAGGACTTCGATGTGAAGGACTTCACCGCGCACCCCGAATTTAGCT
ACCCGGCGATTTACAACGACATTTCCGTGGTACGATTGAGTCGACCCGTA
ACCTTCAACGATTACAAGCATCCGGCCTGTCTACCCTTCGACGATGGGCG
ATTGGGGACCTCCTTCATAGCCATCGGTTGGGGTCAGCTGGAGATCGTGC
CCAGGACGGAGAACAAAAAGCTACAGAAAGTGAAGCTCTACAACTATGGA
ACGCGCTGCAGGATTACGGCGGATAGAAATGATGAGCTACCCGAGGGATA
TAATGCTACCACCCAACTGTGCATCGGGTCCAACGAGCACAAGGACACC
BO06402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-PA | 960 | CG11842-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-RA | 1118 | CG11842-RA | 22..804 | 17..799 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29053188..29053599 | 388..799 | 2060 | 100 | Plus |
3R | 32079331 | 3R | 29052852..29053122 | 117..387 | 1355 | 100 | Plus |
3R | 32079331 | 3R | 29052701..29052800 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:07:47 has no hits.
BO06402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:28 Download gff for
BO06402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:47 Download gff for
BO06402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:03 Download gff for
BO06402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 16..804 | 9..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:37 Download gff for
BO06402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 16..804 | 9..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:37 Download gff for
BO06402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29052695..29052800 | 9..116 | 96 | -> | Plus |
3R | 29052852..29053122 | 117..387 | 100 | -> | Plus |
3R | 29053188..29053599 | 388..799 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:03 Download gff for
BO06402.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24878417..24878522 | 9..116 | 96 | -> | Plus |
arm_3R | 24878574..24878844 | 117..387 | 100 | -> | Plus |
arm_3R | 24878910..24879321 | 388..799 | 100 | | Plus |
BO06402.complete Sequence
991 bp (991 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630378
> BO06402.complete
GAAGTTATCAGTCGACATGAGCAGCGCGATCTTCGCCAAGATTGTCCAGC
TGGGAGCAGTATTGCTGGTTTCATTCGTCGCATGGGCGTCAGCTCAGGAT
TCGGATATAGCCAGGACGTGCACTGCCTACAAGAGAAGCGTTTGGGAGGA
GACGTCCGAGTTCAGCTTTCTGATCGAGAACGCTCCGATTATCTACAAGA
CCCTGGACAAATGCACTAGCTATGCGCCGCTCATCATCGGCGGAGGACCC
GCCGTGCCCAAGGAGTTCCCGCATGCTGCGCGCCTGGGACACAAAGATGA
GAATGGCGAGGTGGAATGGTTCTGTGGCGGAACACTTATCAGCGACAGAC
ATGTGCTCACCGCAGCGCATTGCCACTACTCACCACAAGGATCAGTGAAC
ATCGCGCGCCTCGGGGACCTGGAATTCGACACCAACAACGACGATGCGGA
TCCGGAGGACTTCGATGTGAAGGACTTCACCGCGCACCCCGAATTTAGCT
ACCCGGCGATTTACAACGACATTTCCGTGGTACGATTGAGTCGACCCGTA
ACCTTCAACGATTACAAGCATCCGGCCTGTCTACCCTTCGACGATGGGCG
ATTGGGGACCTCCTTCATAGCCATCGGTTGGGGTCAGCTGGAGATCGTGC
CCAGGACGGAGAACAAAAAGCTACAGAAAGTGAAGCTCTACAACTATGGA
ACGCGCTGCAGGATTACGGCGGATAGAAATGATGAGCTACCCGAGGGATA
TAATGCTACCACCCAACTGTGCATCGGGTCCAACGAGCACAAGGACACCT
GCAACGGCGATTCCGGCGGACCGGTGCTCATCTATCACATGGACTACCCC
TGCATGTACCATGTGATGGGTATCACATCCATCGGAGTGGCCTGCGACAC
ACCCGATCTTCCCGCGATGTACACACGGGTTCACTTCTACCTGGACTGGA
TTAAGCAGCAGCTGGCCAAAAATGCAAGCTTTCTAGACCAT
BO06402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-RA | 960 | CG11842-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
CG11841-RA | 960 | CG11841-PA | 741..854 | 763..876 | 225 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-RA | 1118 | CG11842-RA | 22..978 | 17..973 | 4785 | 100 | Plus |
CG11841-RA | 1076 | CG11841-RA | 756..869 | 763..876 | 225 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29053188..29053773 | 388..973 | 2930 | 100 | Plus |
3R | 32079331 | 3R | 29052852..29053122 | 117..387 | 1355 | 100 | Plus |
3R | 32079331 | 3R | 29052701..29052800 | 17..116 | 500 | 100 | Plus |
3R | 32079331 | 3R | 29051947..29052060 | 763..876 | 225 | 79.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:05:16 has no hits.
BO06402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:34 Download gff for
BO06402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 1..960 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:01 Download gff for
BO06402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 16..978 | 9..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:15:11 Download gff for
BO06402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 22..978 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:34 Download gff for
BO06402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 16..978 | 9..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:30 Download gff for
BO06402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11842-RA | 22..978 | 17..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:30 Download gff for
BO06402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29052852..29053122 | 117..387 | 100 | -> | Plus |
3R | 29052701..29052800 | 17..116 | 100 | -> | Plus |
3R | 29053188..29053773 | 388..975 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:15:11 Download gff for
BO06402.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24878423..24878522 | 17..116 | 100 | -> | Plus |
arm_3R | 24878574..24878844 | 117..387 | 100 | -> | Plus |
arm_3R | 24878910..24879495 | 388..975 | 99 | | Plus |
BO06402.pep Sequence
Translation from 16 to 991
> BO06402.pep
MSSAIFAKIVQLGAVLLVSFVAWASAQDSDIARTCTAYKRSVWEETSEFS
FLIENAPIIYKTLDKCTSYAPLIIGGGPAVPKEFPHAARLGHKDENGEVE
WFCGGTLISDRHVLTAAHCHYSPQGSVNIARLGDLEFDTNNDDADPEDFD
VKDFTAHPEFSYPAIYNDISVVRLSRPVTFNDYKHPACLPFDDGRLGTSF
IAIGWGQLEIVPRTENKKLQKVKLYNYGTRCRITADRNDELPEGYNATTQ
LCIGSNEHKDTCNGDSGGPVLIYHMDYPCMYHVMGITSIGVACDTPDLPA
MYTRVHFYLDWIKQQLAKNASFLDH
BO06402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11842-PA | 319 | CG11842-PA | 1..319 | 1..319 | 1731 | 100 | Plus |
CG11841-PA | 319 | CG11841-PA | 34..316 | 35..318 | 967 | 61.6 | Plus |
CG11843-PB | 316 | CG11843-PB | 2..314 | 8..317 | 814 | 50 | Plus |
CG11843-PA | 316 | CG11843-PA | 2..314 | 8..317 | 814 | 50 | Plus |
CG4927-PC | 362 | CG4927-PC | 103..356 | 71..313 | 455 | 38.5 | Plus |