Clone Sequence Records
BO06404.3prime Sequence
353 bp (352 high quality bases) assembled on 2005-12-03
> BO06404.3prime
ATGGTCTAGAAAGCTTGCGTGGTACTTGTAGTTCCTGTGGTGCTTCAACT
TGGTGTAGTTAATCAGATAGAAGAACGTCATGCTGGCGACGGTCAGCTGG
AAGAAGGGAGCGATCCCGGCGCGCTTTGGGAACACGTACTTGTGCTGCCA
GCGCCACCAGGCACGGCTCACAGCTCCGGCCACAGCGTTGGGGGTCTTGT
TGCGGCGTCCCAGCCAGGCGCCGATCTCGCCCAGCTTGACCTGGCCGAAG
GGCACATCGGCTTTGCCGTAGAAGCGAGCGGGGTCGTAGGGCCCGTGCAC
CTTGGGGTTGTACTCAGCTGGATAGTCACCGAATGCCATGTCGACTGATA
ACT
BO06404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-PB | 324 | CG4692-RB | 1..321 | 339..19 | 1605 | 100 | Minus |
| CG4692-PA | 324 | CG4692-RA | 1..321 | 339..19 | 1605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-RA | 591 | CG4692-RA | 103..423 | 339..19 | 1605 | 100 | Minus |
| CG4692-RB | 548 | CG4692-RB | 60..380 | 339..19 | 1605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24599256..24599499 | 19..262 | 1220 | 100 | Plus |
| 4 | 1348131 | 4 | 976898..977091 | 219..26 | 820 | 94.8 | Minus |
| 2R | 25286936 | 2R | 24599617..24599695 | 261..339 | 395 | 100 | Plus |
| 4 | 1348131 | 4 | 976824..976900 | 335..259 | 325 | 94.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:33:14 has no hits.
BO06404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:31 Download gff for
BO06404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-PB | 1..324 | 15..339 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:51 Download gff for
BO06404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-PA | 1..324 | 15..339 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:43 Download gff for
BO06404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RB | 56..385 | 13..343 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:06 Download gff for
BO06404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RB | 56..385 | 13..343 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:06 Download gff for
BO06404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24599617..24599702 | 261..347 | 96 | | Plus |
| 2R | 24599251..24599497 | 13..260 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:43 Download gff for
BO06404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20487140..20487225 | 261..347 | 96 | | Plus |
| arm_2R | 20486774..20487020 | 13..260 | 99 | <- | Plus |
BO06404.5prime Sequence
353 bp (352 high quality bases) assembled on 2005-12-03
> BO06404.5prime
GAAGTTATCAGTCGACATGGCATTCGGTGACTATCCAGCTGAGTACAACC
CCAAGGTGCACGGGCCCTACGACCCCGCTCGCTTCTACGGCAAAGCCGAT
GTGCCCTTCGGCCAGGTCAAGCTGGGCGAGATCGGCGCCTGGCTGGGACG
CCGCAACAAGACCCCCAACGCTGTGGCCGGAGCTGTGAGCCGTGCCTGGT
GGCGCTGGCAGCACAAGTACGTGTTCCCAAAGCGCGCCGGGATCGCTCCC
TTCTTCCAGCTGACCGTCGCCAGCATGACGTTCTTCTATCTGATTAACTA
CACCAAGTTGAAGCACCACAGGAACTACAAGTACCACGCAAGCTTTCTAG
ACC
BO06404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-PB | 324 | CG4692-RB | 1..321 | 17..337 | 1605 | 100 | Plus |
| CG4692-PA | 324 | CG4692-RA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-RA | 591 | CG4692-RA | 103..423 | 17..337 | 1605 | 100 | Plus |
| CG4692-RB | 548 | CG4692-RB | 60..380 | 17..337 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24599256..24599499 | 337..94 | 1220 | 100 | Minus |
| 4 | 1348131 | 4 | 976898..977091 | 137..330 | 820 | 94.8 | Plus |
| 2R | 25286936 | 2R | 24599617..24599695 | 95..17 | 395 | 100 | Minus |
| 4 | 1348131 | 4 | 976824..976900 | 21..97 | 325 | 94.8 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:13:48 has no hits.
BO06404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:33 Download gff for
BO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-PB | 1..324 | 17..341 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:52 Download gff for
BO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-PA | 1..324 | 17..341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:05:52 Download gff for
BO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RB | 56..385 | 13..343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:04 Download gff for
BO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RB | 56..385 | 13..343 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:04 Download gff for
BO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24599251..24599497 | 96..343 | 99 | <- | Minus |
| 2R | 24599617..24599702 | 9..95 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:05:52 Download gff for
BO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20486774..20487020 | 96..343 | 99 | <- | Minus |
| arm_2R | 20487140..20487225 | 9..95 | 96 | | Minus |
BO06404.complete Sequence
355 bp (355 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630380
> BO06404.complete
GAAGTTATCAGTCGACATGGCATTCGGTGACTATCCAGCTGAGTACAACC
CCAAGGTGCACGGGCCCTACGACCCCGCTCGCTTCTACGGCAAAGCCGAT
GTGCCCTTCGGCCAGGTCAAGCTGGGCGAGATCGGCGCCTGGCTGGGACG
CCGCAACAAGACCCCCAACGCTGTGGCCGGAGCTGTGAGCCGTGCCTGGT
GGCGCTGGCAGCACAAGTACGTGTTCCCAAAGCGCGCCGGGATCGCTCCC
TTCTTCCAGCTGACCGTCGCCAGCATGACGTTCTTCTATCTGATTAACTA
CACCAAGTTGAAGCACCACAGGAACTACAAGTACCACGCAAGCTTTCTAG
ACCAT
BO06404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-RA | 324 | CG4692-PA | 1..321 | 17..337 | 1605 | 100 | Plus |
| CG4692-RB | 324 | CG4692-PB | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-RA | 591 | CG4692-RA | 103..423 | 17..337 | 1605 | 100 | Plus |
| CG4692-RB | 548 | CG4692-RB | 60..380 | 17..337 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24599256..24599499 | 337..94 | 1220 | 100 | Minus |
| 4 | 1348131 | 4 | 976898..977091 | 137..330 | 820 | 94.8 | Plus |
| 2R | 25286936 | 2R | 24599617..24599695 | 95..17 | 395 | 100 | Minus |
| 4 | 1348131 | 4 | 976824..976900 | 21..97 | 325 | 94.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:40:49 has no hits.
BO06404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:05 Download gff for
BO06404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RA | 1..324 | 17..341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:15 Download gff for
BO06404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RA | 71..403 | 9..343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:36 Download gff for
BO06404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RB | 60..380 | 17..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:05 Download gff for
BO06404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RA | 71..403 | 9..343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:43 Download gff for
BO06404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4692-RB | 60..380 | 17..339 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:43 Download gff for
BO06404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24599254..24599497 | 96..339 | 99 | <- | Minus |
| 2R | 24599617..24599695 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:36 Download gff for
BO06404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20486777..20487020 | 96..339 | 99 | <- | Minus |
| arm_2R | 20487140..20487218 | 17..95 | 100 | | Minus |
BO06404.pep Sequence
Translation from 16 to 355
> BO06404.pep
MAFGDYPAEYNPKVHGPYDPARFYGKADVPFGQVKLGEIGAWLGRRNKTP
NAVAGAVSRAWWRWQHKYVFPKRAGIAPFFQLTVASMTFFYLINYTKLKH
HRNYKYHASFLDH
BO06404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4692-PA | 107 | CG4692-PA | 1..107 | 1..107 | 604 | 100 | Plus |
| CG4692-PB | 107 | CG4692-PB | 1..107 | 1..107 | 604 | 100 | Plus |
