Clone Sequence Records
BO06406.3prime Sequence
924 bp (822 high quality bases) assembled on 2005-12-03
> BO06406.3prime
ATGGTCTAGAAAGCTTGCGGAGCTGGCTTCGCCGCCGCCGGCAGAAATGG
GCGTCAGGTTAATCAGGTTGTTGCTGCTCTCGGCCAGCTCGGCGATGGAG
ACGCGTCCGCGTTGTTTTATGAACTTGGCCACGGCCAATAGCTCCTTCTC
GGAAACATAGATGAACTTGCCGCGGTCGTCTATGACGCCGGTGAGGGTGC
CATCGGCCTGCAGGTTCTGGATGCGATCAATGACCTGCTGCGTCTTTAAT
TTGAAGGCCACGGCCAGATCCTCTAGGACCACCACCTTGTTGTCCCTAAT
GTACTGAATGAAGTCGGCCAGGAGGTTGTCCTGGTCGTCGGCGTCGCCCT
CTTCGAAGCCCTCTTCCTCCACACTGAAGGCAGCCTTCATCTTCAGGTAC
TCCTCGTGCTCCTTGCGCTCCCGTTCCTCTTTGGCCAGGCGCTCGGCATC
CACCCGCTTGCGCTCGGCCTCTGCCTCAAGGTCTTCTTGCTGCTTGCGCT
CCGCCTCCTCCTTCGCCTCCTTCACCTTGCGCTGTTCGCGATCGTGCAGT
TCCTGCTCCCGCTGAAGCCGCTTCTGCTCCTTGGCCTCCATCTTGGCACG
CTTCTTAGCACCCATTTTCTCATCCAGCACCGCTCCCTGGGGCACACGTG
CCTCATCACCATCGACCTGACCCTCGTCCTCGTGGTCAGAGTCGCCGGCA
GCCGGAAGAGCACCAGCTGCCGCGGCGACTGGAGCCGCTGGAACATTCTG
GCGCAGTCGATTGCGCTGATTTCGAGCTATTTGAGCCCGACGCGGAACAC
CCTCCTGGGCGCGCTGTGGAACGCCACGTTGAGGAGCTGCAGCTACCTTG
GTTTCTGGGGCGGCGTTTTTCTTTTGCAGCAGGTACAGTGTGACGATCAC
AACTAAAAGAGCTACGGCAATCCC
BO06406.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-PA | 930 | CG5862-RA | 22..927 | 924..19 | 4530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-RA | 1090 | CG5862-RA | 103..1008 | 924..19 | 4530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21215306..21216144 | 857..19 | 4195 | 100 | Minus |
| 3R | 32079331 | 3R | 21215181..21215250 | 924..855 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:56:22 has no hits.
BO06406.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:36 Download gff for
BO06406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-PA | 22..930 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:56 Download gff for
BO06406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-PA | 22..930 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:48 Download gff for
BO06406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 103..1008 | 19..924 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:28 Download gff for
BO06406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 103..1008 | 19..924 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:28 Download gff for
BO06406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21215181..21215250 | 855..924 | 100 | -> | Minus |
| 3R | 21215309..21216144 | 19..854 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:48 Download gff for
BO06406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17040903..17040972 | 855..924 | 100 | -> | Minus |
| arm_3R | 17041031..17041866 | 19..854 | 100 | | Minus |
BO06406.5prime Sequence
958 bp (789 high quality bases) assembled on 2005-12-03
> BO06406.5prime
GAAGTTATCAGTCGACATGGATCTGATCATTCTCGTGGGGATTGCCGTAG
CTCTTTTAGTTGTGATCGTCACACTGTACCTGCTGCAAAAGAAAAACGCC
GCCCCAGAAACCAAGGTAGCTGCAGCTCCTCAACGTGGCGTTCCACAGCG
CGCCCAGGAGGGTGTTCCGCGTCGGGCTCAAATAGCTCGAAATCAGCGCA
ATCGACTGCGCCAGAATGTTCCAGCGGCTCCAGTCGCCGCGGCAGCTGGT
GCTCTTCCGGCTGCCGGCGACTCTGACCACGAGGACGAGGGTCAGGTCGA
TGGTGATGAGGCACGTGTGCCCCAGGGAGCGGTGCTGGATGAGAAAATGG
GTGCTAAGAAGCGTGCCAAGATGGAGGCCAAGGAGCAGAAGCGGCTTCAG
CGGGAGCAGGAACTGCACGATCGCGAACAGCGCAAGGTGAAGGAGGCGAA
GGAGGAGGCGGAGCGCAAGCAGCAAGAAGACCTTGAGGCAGAGGCCGAGC
GCAAGCGGGTGGATGCCGAGCGCCTGGCCAAAGAGGAACGGGAGCGCAAG
GAGCACGAGGAGTACCTGAAGATGAAGGCTGCCTTCAGTGTGGAGGAAGA
GGGCTTCGAAGAGGGCGACGCCGACGACCAGGACAACCTCCTGGCCGACT
TCATTCAGTACATTAGGGACAACAAGGTGGTGGTCCTAGAGGATCTGGCC
GTGGCCTTCAAATTAAAGACGCAGCAGGTCATTGATCGCATCCAGAACCT
GCAGGCCGATGGCACCCTCACCGGCGTCATAGACGACCGCGGCAAGTTCA
TCTATGTTTCCGAGAAGGAGCTATTGGCCGTGGCCAAGTTCATAAAACAA
CGCGGACGCGTCTCCATCGCCGAGCTGGCCGAGAGCAGCAACAACCTGAT
TAACCTGACGCCATTTCTGCCGGCGGCGGCGAGGCCAGCTCCGCAAGCTT
TCTAGACC
BO06406.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-PA | 930 | CG5862-RA | 1..896 | 17..912 | 4480 | 100 | Plus |
| CG5862-PA | 930 | CG5862-RA | 896..927 | 911..942 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-RA | 1090 | CG5862-RA | 82..1008 | 17..942 | 4595 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21215306..21216144 | 105..942 | 4130 | 99.8 | Plus |
| 3R | 32079331 | 3R | 21215160..21215250 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:08:10 has no hits.
BO06406.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:37 Download gff for
BO06406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-PA | 1..930 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:57 Download gff for
BO06406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-PA | 1..930 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:05 Download gff for
BO06406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 77..1008 | 12..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:03:52 Download gff for
BO06406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 77..1008 | 12..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:03:52 Download gff for
BO06406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21215155..21215250 | 12..107 | 97 | -> | Plus |
| 3R | 21215309..21216144 | 108..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:05 Download gff for
BO06406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17040877..17040972 | 12..107 | 97 | -> | Plus |
| arm_3R | 17041031..17041866 | 108..942 | 99 | | Plus |
BO06406.complete Sequence
961 bp (961 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630381
> BO06406.complete
GAAGTTATCAGTCGACATGGATCTGATCATTCTCGTGGGGATTGCCGTAG
CTCTTTTAGTTGTGATCGTCACACTGTACCTGCTGCAAAAGAAAAACGCC
GCCCCAGAAACCAAGGTAGCTGCAGCTCCTCAACGTGGCGTTCCACAGCG
CGCCCAGGAGGGTGTTCCGCGTCGGGCTCAAATAGCTCGAAATCAGCGCA
ATCGACTGCGCCAGAATGTTCCAGCGGCTCCAGTCGCCGCGGCAGCTGGT
GCTCTTCCGGCTGCCGGCGACTCTGACCACGAGGACGAGGGTCAGGTCGA
TGGTGATGAGGCACGTGTGCCCCAGGGAGCGGTGCTGGATGAGAAAATGG
GTGCTAAGAAGCGTGCCAAGATGGAGGCCAAGGAGCAGAAGCGGCTTCAG
CGGGAGCAGGAACTGCACGATCGCGAACAGCGCAAGGTGAAGGAGGCGAA
GGAGGAGGCGGAGCGCAAGCAGCAAGAAGACCTTGAGGCAGAGGCCGAGC
GCAAGCGGGTGGATGCCGAGCGCCTGGCCAAAGAGGAACGGGAGCGCAAG
GAGCACGAGGAGTACCTGAAGATGAAGGCTGCCTTCAGTGTGGAGGAAGA
GGGCTTCGAAGAGGGCGACGCCGACGACCAGGACAACCTCCTGGCCGACT
TCATTCAGTACATTAGGGACAACAAGGTGGTGGTCCTAGAGGATCTGGCC
GTGGCCTTCAAATTAAAGACGCAGCAGGTCATTGATCGCATCCAGAACCT
GCAGGCCGATGGCACCCTCACCGGCGTCATAGACGACCGCGGCAAGTTCA
TCTATGTTTCCGAGAAGGAGCTATTGGCCGTGGCCAAGTTCATAAAACAA
CGCGGACGCGTCTCCATCGCCGAGCTGGCCGAGAGCAGCAACAACCTGAT
TAACCTGACGCCCATTTCTGCCGGCGGCGGCGAAGCCAGCTCCGCAAGCT
TTCTAGACCAT
BO06406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-RA | 930 | CG5862-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-RA | 1090 | CG5862-RA | 82..1008 | 17..943 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21215306..21216144 | 105..943 | 4195 | 100 | Plus |
| 3R | 32079331 | 3R | 21215160..21215250 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:15:35 has no hits.
BO06406.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:06 Download gff for
BO06406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:16 Download gff for
BO06406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 84..1015 | 12..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:20 Download gff for
BO06406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 82..1008 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:06 Download gff for
BO06406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 84..1015 | 12..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:07 Download gff for
BO06406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 82..1008 | 17..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:07 Download gff for
BO06406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21215160..21215250 | 17..107 | 100 | -> | Plus |
| 3R | 21215309..21216144 | 108..945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:20 Download gff for
BO06406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17040882..17040972 | 17..107 | 100 | -> | Plus |
| arm_3R | 17041031..17041866 | 108..945 | 99 | | Plus |
BO06406.pep Sequence
Translation from 16 to 961
> BO06406.pep
MDLIILVGIAVALLVVIVTLYLLQKKNAAPETKVAAAPQRGVPQRAQEGV
PRRAQIARNQRNRLRQNVPAAPVAAAAGALPAAGDSDHEDEGQVDGDEAR
VPQGAVLDEKMGAKKRAKMEAKEQKRLQREQELHDREQRKVKEAKEEAER
KQQEDLEAEAERKRVDAERLAKEERERKEHEEYLKMKAAFSVEEEGFEEG
DADDQDNLLADFIQYIRDNKVVVLEDLAVAFKLKTQQVIDRIQNLQADGT
LTGVIDDRGKFIYVSEKELLAVAKFIKQRGRVSIAELAESSNNLINLTPI
SAGGGEASSASFLDH
BO06406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-PA | 309 | CG5862-PA | 1..309 | 1..309 | 1516 | 100 | Plus |
