Clone Sequence Records
BO06408.3prime Sequence
907 bp (766 high quality bases) assembled on 2005-12-03
> BO06408.3prime
ATGGTCTAGAAAGCTTGCGAGCGCACTGGTTGGCTGGTACACATAGAACT
CTTCATCCGCAGACTTGCTGACCCGCAGCTTTCCCTCCTTCTCCAGCTTG
CTTAGGTGGTGGTTCACGTTATAGGCGGCGGCGGGCCAGAGGTTTTCTGG
TGTCTCCTTGTAGACCACCTTCACGACGTCCATAGCCTGCAAGTTTTCGT
TGGGCCGCTGAACGAAGAACTGCAGGATTTGCTGTTCTCGCTGGTTGCGA
TGGTTAATGTAGTACTCAATCTTGCCAATTGGTTCCTCAATGACATTGCC
ATGGCCTGGAAAGATACGCTGCGGCTTGATGTCTAGTATCTTCTCCAGGC
TTTTCATGTACTCAAATAGGTCCTCGAAGACGGCGGTGCCCTCGCCAAGG
ATGCAATCGCCGCTGAAGAGTGTGCCCTCGTTCATGGCCAGCACCACATG
ATCAGTGGTGTGACCGGGTGTGTGAACCACCCGCACATTCGCCCCCTCCG
TGGTGAACTCTTGGTTGTGTGCTAGCGGATGGAGTTTGATATCCGTCGGT
ATCTCGGGGCACACATCTGGAGCATCTGTACGCCCAAACTTGAATACGCG
GCAATCCTTTTCGGCCAATTTAGTACCCACAATGCTCTTTACACCGCCGA
CATGGTCGTGGTGCCAGTGGGTCAGCAGGATGGTGTCGATGGAGGCCTTT
TCCTGCTGTAGCACATCTCCCAGGTGAGCGATGTACTGCGGCACGTCTTC
GTCACCAGTGTCGATCAAGATTCTCCTACTGCCACTGCCGAGGAGGTACG
TATTGGTGCCCTGGAGCGTCATGGCACTGGGATTACAACCCAGTATCCGA
ATTACGGAGGAGGTGAGTCTGGTACAGCCGGAATCAGCGCCATGTCGACT
GATAACT
BO06408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12375-PA | 879 | CG12375-RA | 21..876 | 874..19 | 4280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12375-RA | 1165 | CG12375-RA | 152..1027 | 893..19 | 4355 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8125806..8126681 | 19..893 | 4330 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:57:39 has no hits.
BO06408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:40 Download gff for
BO06408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-PA | 1..879 | 15..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:01 Download gff for
BO06408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-PA | 1..879 | 15..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:22 Download gff for
BO06408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 149..1033 | 11..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:23:53 Download gff for
BO06408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 149..1033 | 11..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:23:53 Download gff for
BO06408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8125797..8126684 | 11..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:22 Download gff for
BO06408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8125797..8126684 | 11..896 | 99 | | Plus |
BO06408.5prime Sequence
822 bp (735 high quality bases) assembled on 2005-12-03
> BO06408.5prime
GAAGTTATCAGTCGACATGGCGCTGATTCCGGCTGTTACCAGACTCACCT
CCTCCGTAATTCGGATACTGGGTTGTAATCCCAGTGCCATGACGCTCCAG
GGCACCAATACGTACCTCCTCGGCAGTGGCAGTAGGAGAATCTTGATCGA
CACTGGTGACGAAGACGTGCCGCAGTACATCGCTCACCTGGGAGATGTGC
TACAGCAGGAAAAGGCCTCCATCGACACCATCCTGCTGACCCACTGGCAC
CACGACCATGTCGGCGGTGTAAAGAGCATTGTGGGTACTAAATTGGCCGA
AAAGGATTGCCGCGTATTCAAGTTTGGGCGTACAGATGCTCCAGATGTGT
GCCCCGAGATACCGACGGATATCAAACTCCATCCGCTAGCACACAACCAA
GAGTTCACCACGGAGGGGGCGAATGTGCGGGTGGTTCACACACCCGGTCA
CACCACTGATCATGTGGTGCTGGCCATGAACGAGGGCACACTCTTCAGCG
GCGATTGCATCCTTGGCGAGGGCACCGCCGTCTTCGAGGACCTATTTGAG
TACATGAAAAGCCTGGAGAAGATACTAGACATCAAGCCGCAGCGTATCTT
TCCAGGCCATGGCAATGTCATTGAGGAACCAATTGGCAAGATTGAGTACT
ACATTAACCATCGCAACCAGCGAGAACAGCAAATCCTGCAGTTCTTCGTT
CAGCGGCCCAACGAANACTTGCAGGCTATGGACGTCGTGGAGGTGGTCTA
CAAGGAGACACCAGAAAACCTCTGGCCCGCCGCCGCCTATAACGTGAACC
ACCACCTAAGCAAGCTGGAGAA
BO06408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12375-PA | 879 | CG12375-RA | 1..806 | 17..822 | 3986 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12375-RA | 1165 | CG12375-RA | 152..957 | 17..822 | 4004 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8125876..8126681 | 822..17 | 4004 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:57:49 has no hits.
BO06408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:41 Download gff for
BO06408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-PA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:03 Download gff for
BO06408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-PA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:23 Download gff for
BO06408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 149..957 | 14..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:24:35 Download gff for
BO06408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 149..957 | 14..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:24:35 Download gff for
BO06408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8125876..8126684 | 14..822 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:23 Download gff for
BO06408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8125876..8126684 | 14..822 | 99 | | Minus |
BO06408.complete Sequence
910 bp (910 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630382
> BO06408.complete
GAAGTTATCAGTCGACATGGCGCTGATTCCGGCTGTTACCAGACTCACCT
CCTCCGTAATTCGGATACTGGGTTGTAATCCCAGTGCCATGACGCTCCAG
GGCACCAATACGTACCTCCTCGGCAGTGGCAGTAGGAGAATCTTGATCGA
CACTGGTGACGAAGACGTGCCGCAGTACATCGCTCACCTGGGAGATGTGC
TACAGCAGGAAAAGGCCTCCATCGACACCATCCTGCTGACCCACTGGCAC
CACGACCATGTCGGCGGTGTAAAGAGCATTGTGGGTACTAAATTGGCCGA
AAAGGATTGCCGCGTATTCAAGTTTGGGCGTACAGATGCTCCAGATGTGT
GCCCCGAGATACCGACGGATATCAAACTCCATCCGCTAGCACACAACCAA
GAGTTCACCACGGAGGGGGCGAATGTGCGGGTGGTTCACACACCCGGTCA
CACCACTGATCATGTGGTGCTGGCCATGAACGAGGGCACACTCTTCAGCG
GCGATTGCATCCTTGGCGAGGGCACCGCCGTCTTCGAGGACCTATTTGAG
TACATGAAAAGCCTGGAGAAGATACTAGACATCAAGCCGCAGCGTATCTT
TCCAGGCCATGGCAATGTCATTGAGGAACCAATTGGCAAGATTGAGTACT
ACATTAACCATCGCAACCAGCGAGAACAGCAAATCCTGCAGTTCTTCGTT
CAGCGGCCCAACGAAAACTTGCAGGCTATGGACGTCGTGAAGGTGGTCTA
CAAGGAGACACCAGAAAACCTCTGGCCCGCCGCCGCCTATAACGTGAACC
ACCACCTAAGCAAGCTGGAGAAGGAGGGAAAGCTGCGGGTCAGCAAGTCT
GCGGATGAAGAGTTCTATGTGTACCAGCCAACCAGTGCGCTCGCAAGCTT
TCTAGACCAT
BO06408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12375-RA | 879 | CG12375-PA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12375-RA | 1165 | CG12375-RA | 152..1027 | 17..892 | 4380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8125806..8126681 | 892..17 | 4380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:57:37 has no hits.
BO06408.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:07 Download gff for
BO06408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 1..879 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:18 Download gff for
BO06408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 118..1002 | 14..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:51:44 Download gff for
BO06408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 152..1027 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:08 Download gff for
BO06408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 118..1002 | 14..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:12 Download gff for
BO06408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12375-RA | 152..1027 | 17..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:12 Download gff for
BO06408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8125804..8126681 | 17..894 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:51:44 Download gff for
BO06408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8125804..8126681 | 17..894 | 99 | | Minus |
BO06408.pep Sequence
Translation from 16 to 910
> BO06408.pep
MALIPAVTRLTSSVIRILGCNPSAMTLQGTNTYLLGSGSRRILIDTGDED
VPQYIAHLGDVLQQEKASIDTILLTHWHHDHVGGVKSIVGTKLAEKDCRV
FKFGRTDAPDVCPEIPTDIKLHPLAHNQEFTTEGANVRVVHTPGHTTDHV
VLAMNEGTLFSGDCILGEGTAVFEDLFEYMKSLEKILDIKPQRIFPGHGN
VIEEPIGKIEYYINHRNQREQQILQFFVQRPNENLQAMDVVKVVYKETPE
NLWPAAAYNVNHHLSKLEKEGKLRVSKSADEEFYVYQPTSALASFLDH
BO06408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12375-PA | 292 | CG12375-PA | 1..292 | 1..292 | 1536 | 100 | Plus |
