Clone Sequence Records
BO06409.3prime Sequence
473 bp (472 high quality bases) assembled on 2005-12-03
> BO06409.3prime
ATGGTCTAGAAAGCTTGCGAACTGACCCCAATGCTGTGGCAGACCCATAC
CATTCGGGTAGTTCTGACTGGTCATATTCTCGACGAGGTAATTTGCAAAG
TACTCGCCTCGCTGATCCTCGCGAACGTGACGCATTGCCCTCGTGACACT
GGCCATTAGGAGGCACATCTCCGGCTCCTGACTTTGGCATGGCGGAGTGG
GTTTGGTCATAGTGTAGAAACTTCGTTTCTTCCGCCGACGTGGTGGTCCA
TTTGGCCCTCCTTGCGCCGGAAAAACGCCCAACGGTGGCTCTTGAGGAGC
GTCCAGGAGTATGTCCATCTGACGATTGACTCCCAGGCGCTGCTGCTGCT
GTCCATCCTCCAATGTGTCCAAGTCATCGCCAGCATCTTCATTCACCGCG
TCGCCGACTCGATCGATTAGCTGCTCATCGTACAGATCGTGTCCGTGTAG
TACGTCCATGTCGACTGATAACT
BO06409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8489-PA | 444 | CG8489-RA | 1..441 | 459..19 | 2205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:59:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| soti-RA | 1037 | CG8489-RA | 171..611 | 459..19 | 2205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14381089..14381529 | 19..459 | 2205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:59:27 has no hits.
BO06409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:42 Download gff for
BO06409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8489-PA | 1..444 | 16..459 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:03 Download gff for
BO06409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8489-PA | 1..444 | 16..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:37 Download gff for
BO06409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| soti-RA | 169..611 | 19..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:32:02 Download gff for
BO06409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| soti-RA | 169..611 | 19..462 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:32:02 Download gff for
BO06409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14381089..14381534 | 19..465 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:37 Download gff for
BO06409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10206811..10207256 | 19..465 | 99 | <- | Plus |
BO06409.5prime Sequence
473 bp (472 high quality bases) assembled on 2005-12-03
> BO06409.5prime
GAAGTTATCAGTCGACATGGACGTACTACACGGACACGATCTGTACGATG
AGCAGCTAATCGATCGAGTCGGCGACGCGGTGAATGAAGATGCTGGCGAT
GACTTGGACACATTGGAGGATGGACAGCAGCAGCAGCGCCTGGGAGTCAA
TCGTCAGATGGACATACTCCTGGACGCTCCTCAAGAGCCACCGTTGGGCG
TTTTTCCGGCGCAAGGAGGGCCAAATGGACCACCACGTCGGCGGAAGAAA
CGAAGTTTCTACACTATGACCAAACCCACTCCGCCATGCCAAAGTCAGGA
GCCGGAGATGTGCCTCCTAATGGCCAGTGTCACGAGGGCAATGCGTCACG
TTCGCGAGGATCAGCGAGGCGAGTACTTTGCAAATTACCTCGTCGAGAAT
ATGACCAGTCAGAACTACCCGAATGGTATGGGTCTGCCACAGCATTGGGG
TCAGTTCGCAAGCTTTCTAGACC
BO06409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8489-PA | 444 | CG8489-RA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| soti-RA | 1037 | CG8489-RA | 171..611 | 17..457 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14381089..14381529 | 457..17 | 2205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:08:33 has no hits.
BO06409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:43 Download gff for
BO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8489-PA | 1..444 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:05 Download gff for
BO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8489-PA | 1..444 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:07 Download gff for
BO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| soti-RA | 169..611 | 14..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:53 Download gff for
BO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| soti-RA | 169..611 | 14..457 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:53 Download gff for
BO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14381089..14381534 | 11..457 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:07 Download gff for
BO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10206811..10207256 | 11..457 | 99 | <- | Minus |
BO06409.complete Sequence
475 bp (475 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630383
> BO06409.complete
GAAGTTATCAGTCGACATGGACGTACTACACGGACACGATCTGTACGATG
AGCAGCTAATCGATCGAGTCGGCGACGCGGTGAATGAAGATGCTGGCGAT
GACTTGGACACATTGGAGGATGGACAGCAGCAGCAGCGCCTGGGAGTCAA
TCGTCAGATGGACATACTCCTGGACGCTCCTCAAGAGCCACCGTTGGGCG
TTTTTCCGGCGCAAGGAGGGCCAAATGGACCACCACGTCGGCGGAAGAAA
CGAAGTTTCTACACTATGACCAAACCCACTCCGCCATGCCAAAGTCAGGA
GCCGGAGATGTGCCTCCTAATGGCCAGTGTCACGAGGGCAATGCGTCACG
TTCGCGAGGATCAGCGAGGCGAGTACTTTGCAAATTACCTCGTCGAGAAT
ATGACCAGTCAGAACTACCCGAATGGTATGGGTCTGCCACAGCATTGGGG
TCAGTTCGCAAGCTTTCTAGACCAT
BO06409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| soti-RA | 444 | CG8489-PA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| soti-RA | 1037 | CG8489-RA | 171..611 | 17..457 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14381089..14381529 | 457..17 | 2205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:37:30 has no hits.
BO06409.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:09 Download gff for
BO06409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8489-RA | 1..444 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:19 Download gff for
BO06409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8489-RA | 169..611 | 14..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:22 Download gff for
BO06409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| soti-RA | 171..611 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:09 Download gff for
BO06409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8489-RA | 169..611 | 14..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:07 Download gff for
BO06409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| soti-RA | 171..611 | 17..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:07 Download gff for
BO06409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14381086..14381529 | 17..459 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:22 Download gff for
BO06409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10206808..10207251 | 17..459 | 99 | | Minus |
BO06409.pep Sequence
Translation from 16 to 475
> BO06409.pep
MDVLHGHDLYDEQLIDRVGDAVNEDAGDDLDTLEDGQQQQRLGVNRQMDI
LLDAPQEPPLGVFPAQGGPNGPPRRRKKRSFYTMTKPTPPCQSQEPEMCL
LMASVTRAMRHVREDQRGEYFANYLVENMTSQNYPNGMGLPQHWGQFASF
LDH
BO06409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| soti-PA | 147 | CG8489-PA | 1..147 | 1..147 | 800 | 100 | Plus |
