Clone BO06411 Report

Search the DGRC for BO06411

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG3557-RA
Protein status:BO06411.pep: validated full length
Sequenced Size:847

Clone Sequence Records

BO06411.3prime Sequence

845 bp (844 high quality bases) assembled on 2005-12-03

> BO06411.3prime
ATGGTCTAGAAAGCTTGCAGGACCACAAATAGACTCAAAGGGCATGATGC
AACCATTCGGCATGACTAGAAAAAGGATGATGGGTGCCTCCGACCCGATC
TTAGAGGGAGAGTTGTCTACATCGGAATCCTTGTACACCTCGTACACCAT
GCACCCATCGTTGCCACGAATCAAACGGGTCCACAACCACTTTTGGTCCT
TGTGTCCTTGGGCAATCTGGGATGTAAGCTTGTCTTTCAGCTGTTGACAG
GCCACCGAGCAGGTGGAAATTGATCGGCTTATCTGTTCCCTTATCGTGGC
GCTGCCCGCCTTATTTCTCAACGGAATATCCTCCGCCGGGTGATCGAAGT
CCACCCTGGGAGTACGCTGGCGGGGACAACAGGCAGCGGAACTAAGCCGA
CTCGCGGTCTTGAAGCAGGAAGATTTCGGAGTATCCATTGGACTGCAGGG
CACTAGTGGAGCTTTTGGACTGGCGCAGCATCTCGTTGGCTTGGGATAAC
AACAGATAGTCGACGGCTTGGAGCAGCATGTACTCCAGGCCGATGAAGAT
GGATAAGCCGAGCTGCTTCCGGAACTGCAAGGGCTTGGTGCACAGGGTGC
TGGTGGTGGGCAGGATTCCTTCTTAAAAGCTGATCCTTCATTCGACAACT
CCAGCAATGGAATTATTTTCGTGGCGCCCGAAAGATAGAGGATGCGGTCC
AGGATCGTCATGATGACCTCATCTGGATGCGGGCCCAGCATGTCGAAGAG
TGGAGCCTGCGGCTTCTTCCCCAATCTGAGACCCGTTGGACACTCACAAC
GCGTCGTCTGAGTGGCACAACAGGATTTCATGTCGACTGATAACT

BO06411.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3557-PA 816 CG3557-RA 1..813 831..19 4065 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3557-RA 977 CG3557-RA 90..903 832..19 4070 100 Minus
CG3557-RB 971 CG3557-RB 90..897 832..19 3970 99.3 Minus
CG3557-RC 941 CG3557-RC 285..867 601..19 2915 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2384835..2385453 19..637 3095 100 Plus
2L 23513712 2L 2385506..2385703 635..832 990 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:09:53 has no hits.

BO06411.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:46 Download gff for BO06411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-PA 1..816 18..831 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:08 Download gff for BO06411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-PA 1..816 18..831 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:58 Download gff for BO06411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 80..903 19..839 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:23 Download gff for BO06411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 80..903 19..839 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:23 Download gff for BO06411.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2384835..2385451 19..635 100 <- Plus
2L 2385507..2385713 636..839 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:58 Download gff for BO06411.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2384835..2385451 19..635 100 <- Plus
arm_2L 2385507..2385713 636..839 98   Plus

BO06411.5prime Sequence

845 bp (755 high quality bases) assembled on 2005-12-03

> BO06411.5prime
GAAGTTATCAGTCGACATGAAATCCTGTTGTGCCACTCAGACGACGCGTT
GTGAGTGTCCAACGGGTCTCAGATTGGGGAAGAAGCCGCAGGCTCCACTC
TTCGACATGCTGGGCCCGCATCCAGATGAGGTCATCATGACGATCCTGGA
CCGCATCCTCTATCTTTCGGGCGCCACGAAAATAATTCCATTGCTGGAGT
TGTCGAATGAAGGATCAGCTTTTAAGAAGGAATCCTGCCCACCACCAGCA
CCCTGTGCACCAAGCCCTTGCAGTTCCGGAAGCAGCTCGGCTTATCCATC
TTCATCGGCCTGGAGTACATGCTGCTCCAAGCCGTCGACTATCTGTTGTT
ATCCCAAGCCAACGAGATGCTGCGCCAGTCCAAAAGCTCCACTAGTGCCC
TGCAGTCCAATGGATACTCCGAAATCTTCCTGCTTCAAGACCGCGAGTCG
GCTTAGTTCCGCTGCCTGTTGTCCCCGCCAGCGTACTCCCAGGGTGGACT
TCGATCACCCGGCGGAGGATATTCCGTTGAGAAATAAGGCGGGCAGCGCC
ACGATAAGGGAACAGATAAGCCGATCAATTTCCACCTGCTCGGTGGCCTG
TCAACAGCTGAAAGACAAGCTTACATCCCAGATTGCCCAAGGACACAAGG
ACCAAAAGTGGTTGTGGACCCGTTTGATTCGTGGCAACGATGGGTGCATG
GTGTACGAGGTGTACAAGGATTCCGATGTAGACAACTCTCCCTCTAAGAT
CGGGTCGGAGGCACCCATCATCCTTTTTCTAGTCATGCCGAATGGTTGCA
TCATGCCCTTTGAGTCTATTTGTGGTCCTGCCAGCTTTCTAGACC

BO06411.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3557-PA 816 CG3557-RA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3557-RA 977 CG3557-RA 90..903 16..829 4070 100 Plus
CG3557-RB 971 CG3557-RB 90..897 16..829 3970 99.3 Plus
CG3557-RC 941 CG3557-RC 285..867 247..829 2915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2384835..2385453 829..211 3095 100 Minus
2L 23513712 2L 2385506..2385703 213..16 990 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:13:22 has no hits.

BO06411.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:46 Download gff for BO06411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-PA 1..816 17..830 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:09 Download gff for BO06411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-PA 1..816 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:16:26 Download gff for BO06411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 80..906 9..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:56 Download gff for BO06411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 80..906 9..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:56 Download gff for BO06411.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2384832..2385451 213..834 99 <- Minus
2L 2385507..2385713 9..212 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:16:26 Download gff for BO06411.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2384832..2385451 213..834 99 <- Minus
arm_2L 2385507..2385713 9..212 98   Minus

BO06411.complete Sequence

847 bp (847 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630385

> BO06411.complete
GAAGTTATCAGTCGACATGAAATCCTGTTGTGCCACTCAGACGACGCGTT
GTGAGTGTCCAACGGGTCTCAGATTGGGGAAGAAGCCGCAGGCTCCACTC
TTCGACATGCTGGGCCCGCATCCAGATGAGGTCATCATGACGATCCTGGA
CCGCATCCTCTATCTTTCGGGCGCCACGAAAATAATTCCATTGCTGGAGT
TGTCGAATGAAGGATCAGCTTTTAAGAAGGAATCCTGCCCACCACCAGCA
CCCTGTGCACCAAGCCCTTGCAGTTCCGGAAGCAGCTCGGCTTATCCATC
TTCATCGGCCTGGAGTACATGCTGCTCCAAGCCGTCGACTATCTGTTGTT
ATCCCAAGCCAACGAGATGCTGCGCCAGTCCAAAAGCTCCACTAGTGCCC
TGCAGTCCAATGGATACTCCGAAATCTTCCTGCTTCAAGACCGCGAGTCG
GCTTAGTTCCGCTGCCTGTTGTCCCCGCCAGCGTACTCCCAGGGTGGACT
TCGATCACCCGGCGGAGGATATTCCGTTGAGAAATAAGGCGGGCAGCGCC
ACGATAAGGGAACAGATAAGCCGATCAATTTCCACCTGCTCGGTGGCCTG
TCAACAGCTGAAAGACAAGCTTACATCCCAGATTGCCCAAGGACACAAGG
ACCAAAAGTGGTTGTGGACCCGTTTGATTCGTGGCAACGATGGGTGCATG
GTGTACGAGGTGTACAAGGATTCCGATGTAGACAACTCTCCCTCTAAGAT
CGGGTCGGAGGCACCCATCATCCTTTTTCTAGTCATGCCGAATGGTTGCA
TCATGCCCTTTGAGTCTATTTGTGGTCCTGCAAGCTTTCTAGACCAT

BO06411.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3557-RA 816 CG3557-PA 1..813 17..829 4065 100 Plus
CG3557-RB 810 CG3557-PB 1..807 17..829 3940 99.3 Plus
CG3557-RC 780 CG3557-PC 195..777 247..829 2915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3557-RA 977 CG3557-RA 90..903 16..829 4070 100 Plus
CG3557-RB 971 CG3557-RB 90..897 16..829 3945 99.3 Plus
CG3557-RC 941 CG3557-RC 285..867 247..829 2915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2384835..2385453 829..211 3095 100 Minus
2L 23513712 2L 2385506..2385703 213..16 990 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:27:06 has no hits.

BO06411.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:50 Download gff for BO06411.complete
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 1..816 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:54 Download gff for BO06411.complete
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 80..903 9..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:11:48 Download gff for BO06411.complete
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 91..903 17..831 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:51 Download gff for BO06411.complete
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 80..903 9..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:10 Download gff for BO06411.complete
Subject Subject Range Query Range Percent Splice Strand
CG3557-RA 91..903 17..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:10 Download gff for BO06411.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2385507..2385702 17..212 100   Minus
2L 2384833..2385451 213..831 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:11:48 Download gff for BO06411.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2384833..2385451 213..831 99 <- Minus
arm_2L 2385507..2385702 17..212 100   Minus

BO06411.pep Sequence

Translation from 16 to 847

> BO06411.pep
MKSCCATQTTRCECPTGLRLGKKPQAPLFDMLGPHPDEVIMTILDRILYL
SGATKIIPLLELSNEGSAFKKESCPPPAPCAPSPCSSGSSSAYPSSSAWS
TCCSKPSTICCYPKPTRCCASPKAPLVPCSPMDTPKSSCFKTASRLSSAA
CCPRQRTPRVDFDHPAEDIPLRNKAGSATIREQISRSISTCSVACQQLKD
KLTSQIAQGHKDQKWLWTRLIRGNDGCMVYEVYKDSDVDNSPSKIGSEAP
IILFLVMPNGCIMPFESICGPASFLDH

BO06411.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3557-PA 271 CG3557-PA 1..271 1..271 1479 100 Plus
CG3557-PB 269 CG3557-PB 1..269 1..271 1456 99.3 Plus
CG3557-PC 259 CG3557-PC 1..259 1..271 1387 95.6 Plus