Clone Sequence Records
BO06412.3prime Sequence
897 bp (694 high quality bases) assembled on 2005-12-03
> BO06412.3prime
ATGGTCTAGAAAGCTTGCTAAGCTTGGTGGCTCCGTCATTTCCTCCTTCT
TGGCATCATTTCCCATTGCGTCTAGTGCGTCCTTCTCATCCTCTGGCGGT
GGCGGCAATTCTAATCCTCCGAGCATACTTTCTGGTCGATTTGGAGATGG
CGGTTCGGGAACGAGCTCTTCGGATTCGAGATCTATTTCGCGGGGTGCCT
TACGAGTGGAGGGCCTTTCGAAATCCGGATTGCCGTCATCATCGGTGCGC
ATGCTCAGCGCGAACTTGATAATTCCCATGCCCTGGTAGTCATCGTCGAT
GGGTATGTTTCGGGCCCACACCTTGCAGCTGAAGAAGGTCTTCGCATTCT
CGGGCATCTTGTTCATCTGGATGGCCACCACGCGCGTCACTCCTCTCATG
TTCTCGGAGGCCTCGAAATATGGACCCGGATAGAAGACCATTTCGGGCTT
GGGCCCATTGGTCACCTCGCAGGTGATCCAAATCTTGGGCGTGTTGCCCA
GCTTGCCCACGGTGTCCTGAAGGCTCGCTGGCGCCTCCTTGGGCAAGTCA
TCTGGCGTGTCGTAGGTCTCCGGCACATAGCCAATAACCTTGTTCAGCTT
GATGAAGACGGTCGGCTTTTCGGTGGCGTAGCCCCACGTAGTGTCCTGGT
TGAAATCGGCGAAGAAGTCAATGGCATTGTCGTTCAATTTGTTCAGGAAA
TCGTCGATGCGGTCCGCAATCGGATTGACCTCACTCATGATGTGCGTNAA
GTAGGCCAGCACGGATCGATTCTGGTTGGGCACCATCGACAGACCCGGCG
GGACCTTGAGCCAGCGCGGCTTATTCGGATCAATGATGGCCAGCATAAAG
ATGCCCAACCAAAAGGCCACAATGCACACGATTAGGGCGTATAGTAC
BO06412.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11703-PA | 1062 | CG11703-RA | 181..1059 | 897..19 | 4326 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11703-RA | 1278 | CG11703-RA | 254..1132 | 897..19 | 4354 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19227049..19227927 | 19..897 | 4354 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:34:21 has no hits.
BO06412.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:47 Download gff for
BO06412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11703-PA | 181..1062 | 15..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:11 Download gff for
BO06412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11703-PA | 181..1062 | 15..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:50 Download gff for
BO06412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11703-RA | 254..1140 | 10..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:28 Download gff for
BO06412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11703-RA | 254..1140 | 10..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:28 Download gff for
BO06412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19227041..19227927 | 10..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:50 Download gff for
BO06412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15052763..15053649 | 10..897 | 99 | | Plus |
BO06412.5prime Sequence
766 bp (713 high quality bases) assembled on 2005-12-03
> BO06412.5prime
GAAGTTATCAGTCGACATGCCGGAGGACGTAATGGTGCCCGCTGGGGACT
ACAAGCTGGTCAAGCAGATACGCCGGAACCAGGAGACACGTCGCAAGAAG
GACCTGCCGTGGTCGAAGAGGATATTCGACATAGACGAGCACAAATTGTT
CGGACGCACAGCTCTGGGTTGGATGCGTATCACTGGCTTCTACCTGGTAC
TATACGCCCTAATCGTGTGCATTGTGGCCTTTTGGTTGGGCATCTTTATG
CTGGCCATCATTGATCCGAATAAGCCGCGCTGGCTCAAGGGTCCGCCGGG
TCTGTCGATGGTGCCCAACCAGAATCGATCCGTGCTGGCCTACTTTACGC
ACATCATGAGTGAGGTCAATCCGATTGCGGACCGCATCGACGATTTCCTG
AACAAATTGAACGACAATGCCATTGACTTCTTCGCCGATTTCAACCAGGA
CACTACGTGGGGCTACGCCACCGAAAAGCCGACCGTCTTCATCAAGCTGA
ACAAGGTTATTGGCTATGTGCCGGAGACCTACGACACGCCAGATGACTTG
CCCAAGGAGGCGCCAGCGAGCCTTCAGGACACCGTGGGCAAGCTGGGCAA
CACGCCCAAGATTTGGATCACCTGCGAGGTGACCAATGGGCCCAAGCCCG
AAATGGTCTTCTATCCGGGTCCATATTTCGAGGCCTCCGAGAACATGAGA
GGAGTGACGCGCGTGGTGGCCATCCAGATGAACAAGATGCCCGAGAATGC
GAAGACCTTCTTCAGC
BO06412.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11703-PA | 1062 | CG11703-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11703-RA | 1278 | CG11703-RA | 74..823 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19227358..19228107 | 766..17 | 3750 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 22:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 2634..2687 | 115..168 | 108 | 66.7 | Plus |
BO06412.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:48 Download gff for
BO06412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11703-PA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:13 Download gff for
BO06412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11703-PA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:05 Download gff for
BO06412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11703-RA | 65..823 | 7..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:29 Download gff for
BO06412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11703-RA | 65..823 | 7..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:29 Download gff for
BO06412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19227358..19228116 | 7..766 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:05 Download gff for
BO06412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15053080..15053838 | 7..766 | 99 | | Minus |
BO06412.complete Sequence
1093 bp (1093 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630386
> BO06412.complete
GAAGTTATCAGTCGACATGCCGGAGGACGTAATGGTGCCCGCTGGGGACT
ACAAGCTGGTCAAGCAGATACGCCGGAACCAGGAGACACGTCGCAAGAAG
GACCTGCCGTGGTCGAAGAGGATATTCGACATAGACGAGCACAAATTGTT
CGGACGCACAGCTCTGGGTTGGATGCGTATCACTGGCTTCTACCTGGTAC
TATACGCCCTAATCGTGTGCATTGTGGCCTTTTGGTTGGGCATCTTTATG
CTGGCCATCATTGATCCGAATAAGCCGCGCTGGCTCAAGGGTCCGCCGGG
TCTGTCGATGGTGCCCAACCAGAATCGATCCGTGCTGGCCTACTTTACGC
ACATCATGAGTGAGGTCAATCCGATTGCGGACCGCATCGACGATTTCCTG
AACAAATTGAACGACAATGCCATTGACTTCTTCGCCGATTTCAACCAGGA
CACTACGTGGGGCTACGCCACCGAAAAGCCGACCGTCTTCATCAAGCTGA
ACAAGGTTATTGGCTATGTGCCGGAGACCTACGACACGCCAGATGACTTG
CCCAAGGAGGCGCCAGCGAGCCTTCAGGACACCGTGGGCAAGCTGGGCAA
CACGCCCAAGATTTGGATCACCTGCGAGGTGACCAATGGGCCCAAGCCCG
AAATGGTCTTCTATCCGGGTCCATATTTCGAGGCCTCCGAGAACATGAGA
GGAGTGACGCGCGTGGTGGCCATCCAGATGAACAAGATGCCCGAGAATGC
GAAGACCTTCTTCAGCTGCAAGGTGTGGGCCCGAAACATACCCATCGACG
ATGACTACCAGGGCATGGGAATTATCAAGTTCGCGCTGAGCATGCGCACC
GATGATGACGGCAATCCGGATTTCGAAAGGCCCTCCACTCGTAAGGCACC
CCGCGAAATAGATCTCGAATCCGAAGAGCTCGTTCCCGAACCGCCATCTC
CAAATCGACCAGAAAGTATGCTCGGAGGATTAGAATTGCCGCCACCGCCA
GAGGATGAGAAGGACGCACTAGACGCAATGGGAAATGATGCCAAGAAGGA
GGAAATGACGGAGCCACCAAGCTTAGCAAGCTTTCTAGACCAT
BO06412.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11703-RA | 1062 | CG11703-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11703-RA | 1278 | CG11703-RA | 74..1132 | 17..1075 | 5295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19227049..19228107 | 1075..17 | 5295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:08:04 has no hits.
BO06412.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:53 Download gff for
BO06412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11703-RA | 1..1062 | 17..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:57 Download gff for
BO06412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11703-RA | 65..1140 | 7..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:16 Download gff for
BO06412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11703-RA | 74..1132 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:53 Download gff for
BO06412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11703-RA | 65..1140 | 7..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:48 Download gff for
BO06412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11703-RA | 74..1132 | 17..1077 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:48 Download gff for
BO06412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19227047..19228107 | 17..1077 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:16 Download gff for
BO06412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15052769..15053829 | 17..1077 | 99 | | Minus |
BO06412.pep Sequence
Translation from 16 to 1093
> BO06412.pep
MPEDVMVPAGDYKLVKQIRRNQETRRKKDLPWSKRIFDIDEHKLFGRTAL
GWMRITGFYLVLYALIVCIVAFWLGIFMLAIIDPNKPRWLKGPPGLSMVP
NQNRSVLAYFTHIMSEVNPIADRIDDFLNKLNDNAIDFFADFNQDTTWGY
ATEKPTVFIKLNKVIGYVPETYDTPDDLPKEAPASLQDTVGKLGNTPKIW
ITCEVTNGPKPEMVFYPGPYFEASENMRGVTRVVAIQMNKMPENAKTFFS
CKVWARNIPIDDDYQGMGIIKFALSMRTDDDGNPDFERPSTRKAPREIDL
ESEELVPEPPSPNRPESMLGGLELPPPPEDEKDALDAMGNDAKKEEMTEP
PSLASFLDH
BO06412.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11703-PA | 353 | CG11703-PA | 1..353 | 1..353 | 1897 | 100 | Plus |
nrv2-PG | 323 | CG9261-PG | 18..320 | 20..274 | 239 | 25 | Plus |
nrv2-PF | 323 | CG9261-PF | 18..320 | 20..274 | 239 | 25 | Plus |
nrv2-PC | 323 | CG9261-PC | 18..320 | 20..274 | 239 | 25 | Plus |
nrv1-PB | 309 | CG9258-PB | 20..289 | 28..258 | 230 | 24.9 | Plus |