Clone BO06412 Report

Search the DGRC for BO06412

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG11703-RA
Protein status:BO06412.pep: validated full length
Sequenced Size:1093

Clone Sequence Records

BO06412.3prime Sequence

897 bp (694 high quality bases) assembled on 2005-12-03

> BO06412.3prime
ATGGTCTAGAAAGCTTGCTAAGCTTGGTGGCTCCGTCATTTCCTCCTTCT
TGGCATCATTTCCCATTGCGTCTAGTGCGTCCTTCTCATCCTCTGGCGGT
GGCGGCAATTCTAATCCTCCGAGCATACTTTCTGGTCGATTTGGAGATGG
CGGTTCGGGAACGAGCTCTTCGGATTCGAGATCTATTTCGCGGGGTGCCT
TACGAGTGGAGGGCCTTTCGAAATCCGGATTGCCGTCATCATCGGTGCGC
ATGCTCAGCGCGAACTTGATAATTCCCATGCCCTGGTAGTCATCGTCGAT
GGGTATGTTTCGGGCCCACACCTTGCAGCTGAAGAAGGTCTTCGCATTCT
CGGGCATCTTGTTCATCTGGATGGCCACCACGCGCGTCACTCCTCTCATG
TTCTCGGAGGCCTCGAAATATGGACCCGGATAGAAGACCATTTCGGGCTT
GGGCCCATTGGTCACCTCGCAGGTGATCCAAATCTTGGGCGTGTTGCCCA
GCTTGCCCACGGTGTCCTGAAGGCTCGCTGGCGCCTCCTTGGGCAAGTCA
TCTGGCGTGTCGTAGGTCTCCGGCACATAGCCAATAACCTTGTTCAGCTT
GATGAAGACGGTCGGCTTTTCGGTGGCGTAGCCCCACGTAGTGTCCTGGT
TGAAATCGGCGAAGAAGTCAATGGCATTGTCGTTCAATTTGTTCAGGAAA
TCGTCGATGCGGTCCGCAATCGGATTGACCTCACTCATGATGTGCGTNAA
GTAGGCCAGCACGGATCGATTCTGGTTGGGCACCATCGACAGACCCGGCG
GGACCTTGAGCCAGCGCGGCTTATTCGGATCAATGATGGCCAGCATAAAG
ATGCCCAACCAAAAGGCCACAATGCACACGATTAGGGCGTATAGTAC

BO06412.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11703-PA 1062 CG11703-RA 181..1059 897..19 4326 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11703-RA 1278 CG11703-RA 254..1132 897..19 4354 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19227049..19227927 19..897 4354 99.7 Plus
Blast to na_te.dros performed on 2015-02-12 10:34:21 has no hits.

BO06412.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:47 Download gff for BO06412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11703-PA 181..1062 15..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:11 Download gff for BO06412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11703-PA 181..1062 15..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:50 Download gff for BO06412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 254..1140 10..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:28 Download gff for BO06412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 254..1140 10..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:28 Download gff for BO06412.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19227041..19227927 10..897 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:50 Download gff for BO06412.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15052763..15053649 10..897 99   Plus

BO06412.5prime Sequence

766 bp (713 high quality bases) assembled on 2005-12-03

> BO06412.5prime
GAAGTTATCAGTCGACATGCCGGAGGACGTAATGGTGCCCGCTGGGGACT
ACAAGCTGGTCAAGCAGATACGCCGGAACCAGGAGACACGTCGCAAGAAG
GACCTGCCGTGGTCGAAGAGGATATTCGACATAGACGAGCACAAATTGTT
CGGACGCACAGCTCTGGGTTGGATGCGTATCACTGGCTTCTACCTGGTAC
TATACGCCCTAATCGTGTGCATTGTGGCCTTTTGGTTGGGCATCTTTATG
CTGGCCATCATTGATCCGAATAAGCCGCGCTGGCTCAAGGGTCCGCCGGG
TCTGTCGATGGTGCCCAACCAGAATCGATCCGTGCTGGCCTACTTTACGC
ACATCATGAGTGAGGTCAATCCGATTGCGGACCGCATCGACGATTTCCTG
AACAAATTGAACGACAATGCCATTGACTTCTTCGCCGATTTCAACCAGGA
CACTACGTGGGGCTACGCCACCGAAAAGCCGACCGTCTTCATCAAGCTGA
ACAAGGTTATTGGCTATGTGCCGGAGACCTACGACACGCCAGATGACTTG
CCCAAGGAGGCGCCAGCGAGCCTTCAGGACACCGTGGGCAAGCTGGGCAA
CACGCCCAAGATTTGGATCACCTGCGAGGTGACCAATGGGCCCAAGCCCG
AAATGGTCTTCTATCCGGGTCCATATTTCGAGGCCTCCGAGAACATGAGA
GGAGTGACGCGCGTGGTGGCCATCCAGATGAACAAGATGCCCGAGAATGC
GAAGACCTTCTTCAGC

BO06412.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11703-PA 1062 CG11703-RA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11703-RA 1278 CG11703-RA 74..823 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19227358..19228107 766..17 3750 100 Minus
Blast to na_te.dros performed 2015-02-11 22:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 2634..2687 115..168 108 66.7 Plus

BO06412.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:48 Download gff for BO06412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11703-PA 1..750 17..766 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:13 Download gff for BO06412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11703-PA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:05 Download gff for BO06412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 65..823 7..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:29 Download gff for BO06412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 65..823 7..766 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:29 Download gff for BO06412.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19227358..19228116 7..766 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:05 Download gff for BO06412.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15053080..15053838 7..766 99   Minus

BO06412.complete Sequence

1093 bp (1093 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630386

> BO06412.complete
GAAGTTATCAGTCGACATGCCGGAGGACGTAATGGTGCCCGCTGGGGACT
ACAAGCTGGTCAAGCAGATACGCCGGAACCAGGAGACACGTCGCAAGAAG
GACCTGCCGTGGTCGAAGAGGATATTCGACATAGACGAGCACAAATTGTT
CGGACGCACAGCTCTGGGTTGGATGCGTATCACTGGCTTCTACCTGGTAC
TATACGCCCTAATCGTGTGCATTGTGGCCTTTTGGTTGGGCATCTTTATG
CTGGCCATCATTGATCCGAATAAGCCGCGCTGGCTCAAGGGTCCGCCGGG
TCTGTCGATGGTGCCCAACCAGAATCGATCCGTGCTGGCCTACTTTACGC
ACATCATGAGTGAGGTCAATCCGATTGCGGACCGCATCGACGATTTCCTG
AACAAATTGAACGACAATGCCATTGACTTCTTCGCCGATTTCAACCAGGA
CACTACGTGGGGCTACGCCACCGAAAAGCCGACCGTCTTCATCAAGCTGA
ACAAGGTTATTGGCTATGTGCCGGAGACCTACGACACGCCAGATGACTTG
CCCAAGGAGGCGCCAGCGAGCCTTCAGGACACCGTGGGCAAGCTGGGCAA
CACGCCCAAGATTTGGATCACCTGCGAGGTGACCAATGGGCCCAAGCCCG
AAATGGTCTTCTATCCGGGTCCATATTTCGAGGCCTCCGAGAACATGAGA
GGAGTGACGCGCGTGGTGGCCATCCAGATGAACAAGATGCCCGAGAATGC
GAAGACCTTCTTCAGCTGCAAGGTGTGGGCCCGAAACATACCCATCGACG
ATGACTACCAGGGCATGGGAATTATCAAGTTCGCGCTGAGCATGCGCACC
GATGATGACGGCAATCCGGATTTCGAAAGGCCCTCCACTCGTAAGGCACC
CCGCGAAATAGATCTCGAATCCGAAGAGCTCGTTCCCGAACCGCCATCTC
CAAATCGACCAGAAAGTATGCTCGGAGGATTAGAATTGCCGCCACCGCCA
GAGGATGAGAAGGACGCACTAGACGCAATGGGAAATGATGCCAAGAAGGA
GGAAATGACGGAGCCACCAAGCTTAGCAAGCTTTCTAGACCAT

BO06412.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11703-RA 1062 CG11703-PA 1..1059 17..1075 5295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11703-RA 1278 CG11703-RA 74..1132 17..1075 5295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19227049..19228107 1075..17 5295 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:08:04 has no hits.

BO06412.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:53 Download gff for BO06412.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 1..1062 17..1079 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:57 Download gff for BO06412.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 65..1140 7..1084 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:16 Download gff for BO06412.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 74..1132 17..1077 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:53 Download gff for BO06412.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 65..1140 7..1084 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:48 Download gff for BO06412.complete
Subject Subject Range Query Range Percent Splice Strand
CG11703-RA 74..1132 17..1077 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:48 Download gff for BO06412.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19227047..19228107 17..1077 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:16 Download gff for BO06412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15052769..15053829 17..1077 99   Minus

BO06412.pep Sequence

Translation from 16 to 1093

> BO06412.pep
MPEDVMVPAGDYKLVKQIRRNQETRRKKDLPWSKRIFDIDEHKLFGRTAL
GWMRITGFYLVLYALIVCIVAFWLGIFMLAIIDPNKPRWLKGPPGLSMVP
NQNRSVLAYFTHIMSEVNPIADRIDDFLNKLNDNAIDFFADFNQDTTWGY
ATEKPTVFIKLNKVIGYVPETYDTPDDLPKEAPASLQDTVGKLGNTPKIW
ITCEVTNGPKPEMVFYPGPYFEASENMRGVTRVVAIQMNKMPENAKTFFS
CKVWARNIPIDDDYQGMGIIKFALSMRTDDDGNPDFERPSTRKAPREIDL
ESEELVPEPPSPNRPESMLGGLELPPPPEDEKDALDAMGNDAKKEEMTEP
PSLASFLDH

BO06412.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11703-PA 353 CG11703-PA 1..353 1..353 1897 100 Plus
nrv2-PG 323 CG9261-PG 18..320 20..274 239 25 Plus
nrv2-PF 323 CG9261-PF 18..320 20..274 239 25 Plus
nrv2-PC 323 CG9261-PC 18..320 20..274 239 25 Plus
nrv1-PB 309 CG9258-PB 20..289 28..258 230 24.9 Plus