Clone Sequence Records
BO06416.3prime Sequence
902 bp (901 high quality bases) assembled on 2005-12-03
> BO06416.3prime
ATGGTCTAGAAAGCTTGCATAGTGCTGCTGTTGATGCCGCTTCTTCTCCA
GATACTTCTCCCAGTCGACGGCAACGCGATTGTAGATACCCATGGCGGCA
CGTGCATCCTCCACGGAATTATGCTCGCCCGTTTGGATCTCCTGACCCAG
AACGGCCTTTGTCAGGCGTTTTAAGCTGGGCGTGTGGGTATTAGAGATGA
GTTTGCACAGCGGCTTATAATGCGACGTATCACGAATGTCATGGAACGGA
TGGCGGATGCCCAGTACGGCAAGATCGTTGCGCAGGCCGTGTCCCACCAG
AATGCGGCCATGTATCAGCTTCATCACTTCGTTTTGCACGGCGGCAAAGT
CCTCACCGTTAGCGATGTCCTGCGGCCGAATGCCGGACACGCTGGTGCGG
TAGTCGGTGACCTCCTTTCGCGGCTTCACATACTTGTCCAGCAGCACGTG
TCCCATGCGATTCACGATGGACACGCGTGCCAGCATGTCGTCCCGTGTGT
TGTGTCCCACGCCCACCATCTCGCAGTCCATGGCCAAAATGCGATTGCGG
TGTGCCTTCTTTTTCATGCGCATGCGTGCCGATTTGCTTAGTGGTGCTGA
CTCCGTCGCCTTGGCATCCTGGTTTTCACTTCCAGCTGCTGCTGCTGCTC
CACCGCCAGCAGCGGCCATCCAGTTGGAGCCGGCTGCCCGGCGACTTGTG
TTCACCTGTTGCACCTGTAGGCGCTCCATGGAGGCTTGCAGCTTGCGTTG
ATTGTGTTGCGGGGAAACCACATTTTTCGTGCTGTCCGTGGTGTTTTTGT
TGTTGGCAGACCCGCTTCTGCTGCTGTCCAAGTTATTGGCCCGGCTACGA
TTCATGTCGAACTGCTTCTGGCGTGGCGTAGCGGACATGTCGACTGATAA
CT
BO06416.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6833-PA | 873 | CG6833-RA | 1..870 | 888..19 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6833-RB | 1187 | CG6833-RB | 53..923 | 889..19 | 4355 | 100 | Minus |
| CG6833-RA | 1264 | CG6833-RA | 130..1000 | 889..19 | 4355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:23:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14051335..14052205 | 889..19 | 4355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:23:22 has no hits.
BO06416.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:55 Download gff for
BO06416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6833-PA | 1..873 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:22 Download gff for
BO06416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6833-PA | 1..873 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:03 Download gff for
BO06416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6833-RA | 127..1012 | 8..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:08 Download gff for
BO06416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6833-RA | 127..1012 | 8..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:08 Download gff for
BO06416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14051332..14052217 | 8..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:03 Download gff for
BO06416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14044432..14045317 | 8..892 | 99 | | Minus |
BO06416.5prime Sequence
864 bp (856 high quality bases) assembled on 2005-12-03
> BO06416.5prime
GAAGTTATCAGTCGACATGTCCGCTACGCCACGCCAGAAGCAGTTCGACA
TGAATCGTAGCCGGGCCAATAACTTGGACAGCAGCAGAAGCGGGTCTGCC
AACAACAAAAACACCACGGACAGCACGAAAAATGTGGTTTCCCCGCAACA
CAATCAACGCAAGCTGCAAGCCTCCATGGAGCGCCTACAGGTGCAACAGG
TGAACACAAGTCGCCGGGCAGCCGGCTCCAACTGGATGGCCGCTGCTGGC
GGTGGAGCAGCAGCAGCAGCTGGAAGTGAAAACCAGGATGCCAAGGCGAC
GGAGTCAGCACCACTAAGCAAATCGGCACGCATGCGCATGAAAAAGAAGG
CACACCGCAATCGCATTTTGGCCATGGACTGCGAGATGGTGGGCGTGGGA
CACAACACACGGGACGACATGCTGGCACGCGTGTCCATCGTGAATCGCAT
GGGACACGTGCTGCTGGACAAGTATGTGAAGCCGCGAAAGGAGGTCACCG
ACTACCGCACCAGCGTGTCCGGCATTCGGCCGCAGGACATCGCTAACGGT
GAGGACTTTGCCGCCGTGCAAAACGAAGTGATGAAGCTGATACATGGCCG
CATTCTGGTGGGACACGGCCTGCGCAACGATCTTGCCGTACTGGGCATCC
GCCATCCGTTCCATGACATTCGTGATACGTCGCATTATAAGCCGCTGTGC
AAACTCATCTCTAATACCCACACGCCCAGCTTAAAACGCCTGACAAAGGC
CGTTCTGGGTCAGGAGATCCAAACGGGCGAGCATAATTCCGTGGAGGATG
CACGTGCCGCCATGGGTATCTACAATCGCGTTGCCGTCGACTGGGAGAAG
TATCTGGAGAAGAA
BO06416.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6833-PA | 873 | CG6833-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6833-RB | 1187 | CG6833-RB | 53..901 | 16..864 | 4245 | 100 | Plus |
| CG6833-RA | 1264 | CG6833-RA | 130..978 | 16..864 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14051335..14052183 | 16..864 | 4245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:34:29 has no hits.
BO06416.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:57 Download gff for
BO06416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6833-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:23 Download gff for
BO06416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6833-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:52 Download gff for
BO06416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6833-RA | 127..978 | 13..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:51 Download gff for
BO06416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6833-RA | 127..978 | 13..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:51 Download gff for
BO06416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14051332..14052183 | 13..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:52 Download gff for
BO06416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14044432..14045283 | 13..864 | 99 | | Plus |
BO06416.complete Sequence
904 bp (904 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630387
> BO06416.complete
GAAGTTATCAGTCGACATGTCCGCTACGCCACGCCAGAAGCAGTTCGACA
TGAATCGTAGCCGGGCCAATAACTTGGACAGCAGCAGAAGCGGGTCTGCC
AACAACAAAAACACCACGGACAGCACGAAAAATGTGGTTTCCCCGCAACA
CAATCAACGCAAGCTGCAAGCCTCCATGGAGCGCCTACAGGTGCAACAGG
TGAACACAAGTCGCCGGGCAGCCGGCTCCAACTGGATGGCCGCTGCTGGC
GGTGGAGCAGCAGCAGCAGCTGGAAGTGAAAACCAGGATGCCAAGGCGAC
GGAGTCAGCACCACTAAGCAAATCGGCACGCATGCGCATGAAAAAGAAGG
CACACCGCAATCGCATTTTGGCCATGGACTGCGAGATGGTGGGCGTGGGA
CACAACACACGGGACGACATGCTGGCACGCGTGTCCATCGTGAATCGCAT
GGGACACGTGCTGCTGGACAAGTATGTGAAGCCGCGAAAGGAGGTCACCG
ACTACCGCACCAGCGTGTCCGGCATTCGGCCGCAGGACATCGCTAACGGT
GAGGACTTTGCCGCCGTGCAAAACGAAGTGATGAAGCTGATACATGGCCG
CATTCTGGTGGGACACGGCCTGCGCAACGATCTTGCCGTACTGGGCATCC
GCCATCCGTTCCATGACATTCGTGATACGTCGCATTATAAGCCGCTGTGC
AAACTCATCTCTAATACCCACACGCCCAGCTTAAAACGCCTGACAAAGGC
CGTTCTGGGTCAGGAGATCCAAACGGGCGAGCATAATTCCGTGGAGGATG
CACGTGCCGCCATGGGTATCTACAATCGCGTTGCCGTCGACTGGGAGAAG
TATCTGGAGAAGAAGCGGCATCAACAGCAGCACTATGCAAGCTTTCTAGA
CCAT
BO06416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6833-RB | 873 | CG6833-PB | 1..870 | 17..886 | 4350 | 100 | Plus |
| CG6833-RA | 873 | CG6833-PA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6833-RB | 1187 | CG6833-RB | 53..923 | 16..886 | 4355 | 100 | Plus |
| CG6833-RA | 1264 | CG6833-RA | 130..1000 | 16..886 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14051335..14052205 | 16..886 | 4355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:49:26 has no hits.
BO06416.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:54 Download gff for
BO06416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6833-RA | 1..873 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:59 Download gff for
BO06416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6833-RA | 93..978 | 13..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:34 Download gff for
BO06416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6833-RA | 131..1000 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:54 Download gff for
BO06416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6833-RA | 104..989 | 13..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:47 Download gff for
BO06416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6833-RA | 131..1000 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:47 Download gff for
BO06416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14051336..14052205 | 17..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:34 Download gff for
BO06416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14044436..14045305 | 17..888 | 99 | | Plus |
BO06416.pep Sequence
Translation from 16 to 904
> BO06416.pep
MSATPRQKQFDMNRSRANNLDSSRSGSANNKNTTDSTKNVVSPQHNQRKL
QASMERLQVQQVNTSRRAAGSNWMAAAGGGAAAAAGSENQDAKATESAPL
SKSARMRMKKKAHRNRILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLL
DKYVKPRKEVTDYRTSVSGIRPQDIANGEDFAAVQNEVMKLIHGRILVGH
GLRNDLAVLGIRHPFHDIRDTSHYKPLCKLISNTHTPSLKRLTKAVLGQE
IQTGEHNSVEDARAAMGIYNRVAVDWEKYLEKKRHQQQHYASFLDH
BO06416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6833-PB | 290 | CG6833-PB | 1..290 | 1..290 | 1492 | 100 | Plus |
| CG6833-PA | 290 | CG6833-PA | 1..290 | 1..290 | 1492 | 100 | Plus |
| CG42666-PK | 742 | CG42666-PK | 575..723 | 117..266 | 203 | 35.9 | Plus |
| CG42666-PI | 742 | CG42666-PI | 575..723 | 117..266 | 203 | 35.9 | Plus |
| CG42666-PH | 742 | CG42666-PH | 575..723 | 117..266 | 203 | 35.9 | Plus |
