Clone BO06417 Report

Search the DGRC for BO06417

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:17
Vector:pDNR-Dual
Associated Gene/Transcriptlectin-46Ca-RA
Protein status:BO06417.pep: validated full length
Sequenced Size:1018

Clone Sequence Records

BO06417.3prime Sequence

858 bp (836 high quality bases) assembled on 2005-12-03

> BO06417.3prime
ATGGTCTAGAAAGCTTGCGGCCGCCGGAGCTGGTGTTGCTTCGCCCTCGG
GAGCTGCTGGTGCAGGAGTGGCGGCCTCGGCGGCTGGAGCTCCTTCCGCT
GGTGGAGCTGCCGCCGGAGTGGCTCCTTCCGCTGCCGCGGCATCCGGTGC
GGGCGTGGCTGCTCCAGTTGCGTCTGCCGCCGCGGGTGGACCCGTGCCGC
CTGGCGGCACCGTTTGCTCCTGCTCGGCAATGGGTTCCGCGGCGTTTTCC
ATGCCATTCTCGAACACGGGCTCCGTGGTGCCACCACCATCACCTGGAGT
CGGCGCGCCCTCCGCTTCCTTCTCCTTCGAGACCCCGATTTCCGTTGAAT
TCGAATTGTCAGCTGGCCGTGAATCGCTCTCCACACTTTGCTCTTTGATC
CCCGTCTCTTGCTTATCCTTCTGGCCCGCGTCGTGGTGGAAGTGATGCAA
GTGCTCGTGGCTGTGTTTCTGGCCATCCCCACTGTCCTCGGCGGGAACGG
CGCACTTCATCTGGTTCTGTTCGCAGATGAAGTACTTCTTCTCCTGGCAG
TTCACGTCCAGGACGACGGTGACATTGGGCCTGATCCTGATCTCCAGGCA
GTCGTCCAGGTTGGATCGTTGAGTCGGCTCCACAATATTGGAGTCGCCCA
TGTAGCGCACCAGTTTACCGCTGCTGATGTACTTGAAGCGCCCCTCCGAC
TGCAGATCGTTGCCACCGAACCAGAAGTCATCGAAGCCCACCTGTGACGT
CACGTAGTGTACCACCGCCTTGAAGTCCTCCATCGTGGACACGTCGGCCA
GGTTGAGGCCCTTGCGCAGGCAGTTGTTCTGGGCCCCGAACCAGTTGATC
TTTTTGAT

BO06417.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1656-PA 987 lectin-46Ca-RA 145..984 858..19 4200 100 Minus
CG1652-PA 969 lectin-46Cb-RA 514..549 465..430 155 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Ca-RA 1105 CG1656-RA 165..1004 858..19 4200 100 Minus
lectin-46Cb-RB 1039 CG1652-RB 267..341 726..652 180 82.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9817602..9818434 851..19 4165 100 Minus
Blast to na_te.dros performed 2015-02-11 03:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6879 176..16 204 59.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..2913 182..29 153 57.8 Minus

BO06417.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:57 Download gff for BO06417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1656-PA 145..987 16..858 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:24 Download gff for BO06417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1656-PA 145..987 16..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:00 Download gff for BO06417.3prime
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 165..1008 15..858 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:27:31 Download gff for BO06417.3prime
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 165..1008 15..858 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:27:31 Download gff for BO06417.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9817602..9818438 15..851 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:00 Download gff for BO06417.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5705107..5705943 15..851 99   Minus

BO06417.5prime Sequence

911 bp (796 high quality bases) assembled on 2005-12-03

> BO06417.5prime
GAAGTTATCAGTCGACATGAGGATCCTACCAATTGTGATTCTGACCTTGA
TGACGGTCCATTCCGGCTGCGGAAAGAAGCAGAGCAAGAAGGAAAAGGAC
AAGGGTCCCTGTGGCAAACCGTATCTCAGGGAGCTAAACGGAAAGTGCTT
CTATGTGGGCATCAAAAAGATCAACTGGTTCGGGGCCCAGAACAACTGCC
TGCGCAAGGGCCTCAACCTGGCCGACGTGTCCACGATGGAGGACTTCAAG
GCGGTGGTACACTACGTGACGTCACAGGTGGGCTTCGATGACTTCTGGTT
CGGTGGCAACGATCTGCAGTCGGAGGGGCGCTTCAAGTACATCAGCAGCG
GTAAACTGGTGCGCTACATGGGCGACTCCAATATTGTGGAGCCGACTCAA
CGATCCAACCTGGACGACTGCCTGGAGATCAGGATCAGGCCCAATGTCAC
CGTCGTCCTGGACGTGAACTGCCAGGAGAAGAAGTACTTCATCTGCGAAC
AGAACCAGATGAAGTGCGCCGTTCCCGCCGAGGACAGTGGGGATGGCCAG
AAACACAGCCACGAGCACTTGCATCACTTCCACCACGACGCGGGCCAGAA
GGATAAGCAAGAGACGGGGATCAAAGAGCAAAGTGTGGAGAGCGATTCAC
GGCCAGCTGACAATTCGAATTCAACGGAAATCGGGGTCTCGAAGGAGAAG
GAAGCGGAGGGCGCGCCGACTCCAGGTGATGGTGGTGGCACCACGGAGCC
CGTGTTCGAGAATGGCATGNAAAACGCCGCGGAACCCATTGCCGAGCANG
AGCAAACGGTGTCGCCAGGCGGCACGGGGTCACCCGCGGCGGCAGACGCA
ACTGGAGCAGCCACGCCCGCACCGGATGCCGCGGCAGCGGGAGGAGCCAC
TCCGGCGGCAG

BO06417.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1656-PA 987 lectin-46Ca-RA 1..895 17..911 4337 99.3 Plus
CG1652-PA 969 lectin-46Cb-RA 514..549 554..589 155 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Ca-RA 1105 CG1656-RA 20..915 16..911 4398 99.3 Plus
lectin-46Cb-RB 1039 CG1652-RB 267..341 293..367 180 82.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9817602..9818345 168..911 3638 99.2 Plus
2R 25286936 2R 9817319..9817472 16..169 770 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:10:35 has no hits.

BO06417.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:58 Download gff for BO06417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1656-PA 1..895 17..911 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:26 Download gff for BO06417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1656-PA 1..895 17..911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:53 Download gff for BO06417.5prime
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 16..915 9..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:30 Download gff for BO06417.5prime
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 16..915 9..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:30 Download gff for BO06417.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9817315..9817472 9..169 98 -> Plus
2R 9817604..9818345 170..911 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:53 Download gff for BO06417.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5704820..5704977 9..169 98 -> Plus
arm_2R 5705109..5705850 170..911 99   Plus

BO06417.complete Sequence

1018 bp (1018 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630388

> BO06417.complete
GAAGTTATCAGTCGACATGAGGATCCTACCAATTGTGATTCTGACCTTGA
TGACGGTCCATTCCGGCTGCGGAAAGAAGCAGAGCAAGAAGGAAAAGGAC
AAGGGTCCCTGTGGCAAACCGTATCTCAGGGAGCTAAACGGAAAGTGCTT
CTATGTGGGCATCAAAAAGATCAACTGGTTCGGGGCCCAGAACAACTGCC
TGCGCAAGGGCCTCAACCTGGCCGACGTGTCCACGATGGAGGACTTCAAG
GCGGTGGTACACTACGTGACGTCACAGGTGGGCTTCGATGACTTCTGGTT
CGGTGGCAACGATCTGCAGTCGGAGGGGCGCTTCAAGTACATCAGCAGCG
GTAAACTGGTGCGCTACATGGGCGACTCCAATATTGTGGAGCCGACTCAA
CGATCCAACCTGGACGACTGCCTGGAGATCAGGATCAGGCCCAATGTCAC
CGTCGTCCTGGACGTGAACTGCCAGGAGAAGAAGTACTTCATCTGCGAAC
AGAACCAGATGAAGTGCGCCGTTCCCGCCGAGGACAGTGGGGATGGCCAG
AAACACAGCCACGAGCACTTGCATCACTTCCACCACGACGCGGGCCAGAA
GGATAAGCAAGAGACGGGGATCAAAGAGCAAAGTGTGGAGAGCGATTCAC
GGCCAGCTGACAATTCGAATTCAACGGAAATCGGGGTCTCGAAGGAGAAG
GAAGCGGAGGGCGCGCCGACTCCAGGTGATGGTGGTGGCACCACGGAGCC
CGTGTTCGAGAATGGCATGGAAAACGCCGCGGAACCCATTGCCGAGCAGG
AGCAAACGGTGCCGCCAGGCGGCACGGGTCCACCCGCGGCGGCAGACGCA
ACTGGAGCAGCCACGCCCGCACCGGATGCCGCGGCAGCGGAAGGAGCCAC
TCCGGCGGCAGCTCCACCAGCGGAAGGAGCTCCAGCCGCCGAGGCCGCCA
CTCCTGCACCAGCAGCTCCCGAGGGCGAAGCAACACCAGCTCCGGCGGCC
GCAAGCTTTCTAGACCAT

BO06417.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Ca-RA 987 CG1656-PA 1..984 17..1000 4920 100 Plus
lectin-46Cb-RB 969 CG1652-PB 262..336 293..367 180 82.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Ca-RA 1105 CG1656-RA 20..1004 16..1000 4925 100 Plus
lectin-46Cb-RB 1039 CG1652-RB 267..341 293..367 180 82.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9817602..9818434 168..1000 4165 100 Plus
2R 25286936 2R 9817319..9817472 16..169 770 100 Plus
Blast to na_te.dros performed 2014-11-27 13:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6879 843..1003 204 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..2913 837..990 153 57.8 Plus

BO06417.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:55 Download gff for BO06417.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 1..987 17..1003 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:02 Download gff for BO06417.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 16..1008 9..1004 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:16 Download gff for BO06417.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 21..1004 17..1002 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:56 Download gff for BO06417.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 16..1008 9..1004 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:47 Download gff for BO06417.complete
Subject Subject Range Query Range Percent Splice Strand
lectin-46Ca-RA 21..1004 17..1002 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:47 Download gff for BO06417.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9817320..9817472 17..169 100 -> Plus
2R 9817604..9818434 170..1002 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:16 Download gff for BO06417.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5704825..5704977 17..169 100 -> Plus
arm_2R 5705109..5705939 170..1002 99   Plus

BO06417.pep Sequence

Translation from 16 to 1018

> BO06417.pep
MRILPIVILTLMTVHSGCGKKQSKKEKDKGPCGKPYLRELNGKCFYVGIK
KINWFGAQNNCLRKGLNLADVSTMEDFKAVVHYVTSQVGFDDFWFGGNDL
QSEGRFKYISSGKLVRYMGDSNIVEPTQRSNLDDCLEIRIRPNVTVVLDV
NCQEKKYFICEQNQMKCAVPAEDSGDGQKHSHEHLHHFHHDAGQKDKQET
GIKEQSVESDSRPADNSNSTEIGVSKEKEAEGAPTPGDGGGTTEPVFENG
MENAAEPIAEQEQTVPPGGTGPPAAADATGAATPAPDAAAAEGATPAAAP
PAEGAPAAEAATPAPAAPEGEATPAPAAASFLDH

BO06417.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
lectin-46Ca-PA 328 CG1656-PA 1..328 1..328 1748 100 Plus
lectin-46Cb-PB 322 CG1652-PB 26..314 31..329 617 47 Plus
Tm1-PF 501 CG4898-PF 348..461 213..328 167 45.5 Plus
CG9134-PC 188 CG9134-PC 54..184 37..161 149 30.3 Plus
CG9134-PA 188 CG9134-PA 54..184 37..161 149 30.3 Plus