Clone Sequence Records
BO06418.3prime Sequence
912 bp (753 high quality bases) assembled on 2005-12-03
> BO06418.3prime
ATGGTCTAGAAAGCTTGCGAAACGCATCCGCCTTGGTCCCGTCGCACGTT
TACGCACTACTTCGTTGCCATTGGTTGCCTGTTGTCGTTTCCTCGGTGTA
CAGCTGCTGAAATTTGTGGTCTTCAAGGCTGTGGATATATCTACGGGGAT
CACTACCTCGCCAGTCTCCTCAGCCTGCTGCGGTGCTGGCTGCTCCTGCG
GTGCTGGCTGCTCTTGCTCCACCACGGGTATGAAATCGGCATCCTCTTCT
TTCTGAGTGTTCTCCTCTGTAAATAAAGTACGACGCACGCAGCGCCTCGC
TGTTGGCGGCGTTGAATCCTCCTCGGTATCCTCCTCATCATCGGTGGTTG
GATTACATCGGGCGCTGGCCCGTCGTGCAAAGGAAATGCTGCACAGTGGC
GGAATCAGAGTGGATCGTTTGAGGCTTGTCAGACCCCGATCGTAGACAGC
CAGGCAGATTTCAAAGCCGCTCACTTGACCGCCGGGCAGAAAGGTGCTCC
GATAGCCCAAAGTAAGGTGGACCGCGCATGACTCGCCCATGTCCAGGCCG
CCGTAGATATGTTCATTACGCTTGTTCAACAGGCCACACGCCTCCACATA
CTTCAGGGAGTTCAAATTGTAGCTCGATGGACGGGGCGGTGTGATCAGGG
TTGAGGAAAACTTTTCATTTACCTCCTCGTCATCGCTCTCTGGACGCACA
TGCAGAGTGGTGCCTGTGCGCTCCTTCTCCTCGTAGATGCGACGACGTTC
CGAGTCAAACGATCTGCCGAAGCGCGCCTTCAGCAGAAGTTCGTCGCCCC
ACTCAATTTGTGCTGCTTCCTCGAATCCCTCGTGCTTGTAGCGCATTGTC
AACTGGTTTCTCAAAAATCGGGTGATTGCCTTGGCGCCACGCACATTTCG
ACTGTAGAAGCT
BO06418.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4336-PA | 1008 | rux-RA | 112..1005 | 912..19 | 4445 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:14:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rux-RB | 1319 | CG4336-RB | 183..1076 | 912..19 | 4455 | 99.9 | Minus |
| rux-RA | 1420 | CG4336-RA | 284..1177 | 912..19 | 4455 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6035996..6036889 | 19..912 | 4455 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:14:14 has no hits.
BO06418.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:48:59 Download gff for
BO06418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-PA | 112..1008 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:27 Download gff for
BO06418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4336-PA | 112..1008 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:05:56 Download gff for
BO06418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 284..1177 | 19..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:06 Download gff for
BO06418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 284..1177 | 19..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:06 Download gff for
BO06418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6035996..6036889 | 19..912 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:05:56 Download gff for
BO06418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5930029..5930922 | 19..912 | 99 | | Plus |
BO06418.5prime Sequence
914 bp (786 high quality bases) assembled on 2005-12-03
> BO06418.5prime
GAAGTTATCAGTCGACATGAGCGCTCCAGAAGAACATAAGGAGACGCCTT
TGGAGGTGATCCATGAGTTCATCAATGGCGTAGATGATGGGACCATACGC
CGCGACCTGGGGGAGGACTGCATCCTCAGCTTCTACAGTCGAAATGTGCG
TGGCGCCAAGGCAATCACCGGATTTTTGAGAAACCAGTTGACAATGCGCT
ACAAGCACGAGGGATTCGAGGAAGCAGCACAAATTGAGTGGGGCGACGAA
CTTCTGCTGAAGGCGCGCTTCGGCAGATCGTTTGACTCGGAACGTCGTCG
CATCTACGAGGAGAAGGAGCGCACAGGCACCACTCTGCATGTGCGTCCAG
AGAGCGATGACGAGGAGGTAAATGAAAAGTTTTCCTCAACCCTGATCACA
CCGCCCCGTCCATCGAGCTACAATTTGAACTCCCTGAAGTATGTGGAGGC
GTGTGGCCTGTTGAACAAGCGTAATGAACATATCTACGGCGGCCTGGACA
TGGGCGAGTCATGCGCGGTCCACCTTACTTTGGGCTATCGGAGCACCTTT
CTGCCCGGCGGTCAAGTGAGCGGCTTTGAAATCTGCCTGGCTGTCTACGA
TCGGGGTCTGACAAGCCTCAAACGATCCACTCTGATTCCGCCACTGTGCA
GCATTTCCTTTGCACGACGGGCCAGCGCCCGATGTAATCCAACCACCGAT
GATGAGGAGGATACCGAGGAGGATTCAACGCCGCCNACAGCGAGGCGCTG
CGTGCGTCGTACTTTATTTACAGAGGAGAACACTCAGAAAGAAGAGGATG
CCGATTTCATACCCGTGGTGGAGCAAGAGCAGCCAGCACCGCAGGAGCAG
CCAGCACCGCAGCAGGCTGAGGAGACTGGCGAGGTAGTGATCCCCGTAGA
TATATCCACAGCCT
BO06418.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4336-PA | 1008 | rux-RA | 1..898 | 17..914 | 4471 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rux-RB | 1319 | CG4336-RB | 72..969 | 17..914 | 4479 | 99.9 | Plus |
| rux-RA | 1420 | CG4336-RA | 173..1070 | 17..914 | 4479 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6036103..6036978 | 914..39 | 4369 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:10:42 has no hits.
BO06418.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:00 Download gff for
BO06418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:29 Download gff for
BO06418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4336-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:58:56 Download gff for
BO06418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 168..1070 | 10..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:35 Download gff for
BO06418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 168..1070 | 10..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:35 Download gff for
BO06418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6036103..6036978 | 39..914 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:58:56 Download gff for
BO06418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5930136..5931011 | 39..914 | 99 | <- | Minus |
BO06418.complete Sequence
1039 bp (1039 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630389
> BO06418.complete
GAAGTTATCAGTCGACATGAGCGCTCCAGAAGAACATAAGGAGACGCCTT
TGGAGGTGATCCATGAGTTCATCAATGGCGTAGATGATGGGACCATACGC
CGCGACCTGGGGGAGGACTGCATCCTCAGCTTCTACAGTCGAAATGTGCG
TGGCGCCAAGGCAATCACCGGATTTTTGAGAAACCAGTTGACAATGCGCT
ACAAGCACGAGGGATTCGAGGAAGCAGCACAAATTGAGTGGGGCGACGAA
CTTCTGCTGAAGGCGCGCTTCGGCAGATCGTTTGACTCGGAACGTCGTCG
CATCTACGAGGAGAAGGAGCGCACAGGCACCACTCTGCATGTGCGTCCAG
AGAGCGATGACGAGGAGGTAAATGAAAAGTTTTCCTCAACCCTGATCACA
CCGCCCCGTCCATCGAGCTACAATTTGAACTCCCTGAAGTATGTGGAGGC
GTGTGGCCTGTTGAACAAGCGTAATGAACATATCTACGGCGGCCTGGACA
TGGGCGAGTCATGCGCGGTCCACCTTACTTTGGGCTATCGGAGCACCTTT
CTGCCCGGCGGTCAAGTGAGCGGCTTTGAAATCTGCCTGGCTGTCTACGA
TCGGGGTCTGACAAGCCTCAAACGATCCACTCTGATTCCGCCACTGTGCA
GCATTTCCTTTGCACGACGGGCCAGCGCCCGATGTAATCCAACCACCGAT
GATGAGGAGGATACCGAGGAGGATTCAACGCCGCCAACAGCGAGGCGCTG
CGTGCGTCGTACTTTATTTACAGAGGAGAACACTCAGAAAGAAGAGGATG
CCGATTTCATACCCGTGGTGGAGCAAGAGCAGCCAGCACCGCAGGAGCAG
CCAGCACCGCAGCAGGCTGAGGAGACTGGCGAGGTAGTGATCCCCGTAGA
TATATCCACAGCCTTGAAGACCACAAATTTCAGCAGCTGTACACCGAGGA
AACGACAACAGGCAACCAATGGCAACGAAGTAGTGCGTAAACGTGCGACG
GGACCAAGGCGGATGCGTTTCGCAAGCTTTCTAGACCAT
BO06418.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rux-RB | 1008 | CG4336-PB | 1..1005 | 17..1021 | 5025 | 100 | Plus |
| rux-RA | 1008 | CG4336-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rux-RB | 1319 | CG4336-RB | 72..1076 | 17..1021 | 5025 | 100 | Plus |
| rux-RA | 1420 | CG4336-RA | 173..1177 | 17..1021 | 5025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6035996..6036978 | 1021..39 | 4915 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:10:55 has no hits.
BO06418.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:57 Download gff for
BO06418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 1..1008 | 17..1022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:03 Download gff for
BO06418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 82..1091 | 10..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:49 Download gff for
BO06418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 173..1177 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:57 Download gff for
BO06418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 82..1091 | 10..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:14 Download gff for
BO06418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 173..1177 | 17..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:14 Download gff for
BO06418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6035994..6036978 | 39..1023 | 99 | <- | Minus |
| X | 6037069..6037090 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:49 Download gff for
BO06418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5930027..5931011 | 39..1023 | 99 | <- | Minus |
| arm_X | 5931102..5931123 | 17..38 | 100 | | Minus |
BO06418.pep Sequence
Translation from 16 to 1039
> BO06418.pep
MSAPEEHKETPLEVIHEFINGVDDGTIRRDLGEDCILSFYSRNVRGAKAI
TGFLRNQLTMRYKHEGFEEAAQIEWGDELLLKARFGRSFDSERRRIYEEK
ERTGTTLHVRPESDDEEVNEKFSSTLITPPRPSSYNLNSLKYVEACGLLN
KRNEHIYGGLDMGESCAVHLTLGYRSTFLPGGQVSGFEICLAVYDRGLTS
LKRSTLIPPLCSISFARRASARCNPTTDDEEDTEEDSTPPTARRCVRRTL
FTEENTQKEEDADFIPVVEQEQPAPQEQPAPQQAEETGEVVIPVDISTAL
KTTNFSSCTPRKRQQATNGNEVVRKRATGPRRMRFASFLDH
BO06418.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rux-PB | 335 | CG4336-PB | 1..335 | 1..335 | 1752 | 100 | Plus |
| rux-PA | 335 | CG4336-PA | 1..335 | 1..335 | 1752 | 100 | Plus |
