Clone Sequence Records
BO06419.3prime Sequence
847 bp (845 high quality bases) assembled on 2005-12-03
> BO06419.3prime
ATGGTCTAGAAAGCTTGCCTGGTGCTTCCAGTTGGGTGGGCGCTTCTCGA
AGAAGCTAGCAATGCCCTCTTTGGTGTCGCCCAGCTGGAAATTTTCGCAC
ATCTTCTCCTGCGCAGCCGAAAAGGCTTCCGCTTGGGACATGGCCAGTTG
CTTGTAGTAGAACTCTTTTCCCAGAGAGATGACGGCACGACTTTTTGCCT
TTATGGCATTGGTGATTTCCTCGATCTCCTTATCTAGTTCCTCTGCAGGA
ACAGCTTTGGTGACCATTCCCGATATGTAGGCTTCTTCACCAGTAACGGG
AAGACCGGTCATTAGCATATAGGCGGACTTTGGACGCGACATAATCCGGG
CAACTGCGACTCCGGGTGTTGAGCAAAAAACTCCGACTCCAGCCCCTGGA
GTAGAGAACTTGCTGTTCTTGGTGCAGACTACCATGTCACATGACACCAC
CAGTTGGCAGCCTGCAGCAGCCGCATAGCCATTGACTTTTCCTAGTACGG
GCACCGGCAGTCTTTGGATGTCGTTTATAACATCGGTTAGCTTCTGGAAC
ACACAAGCCTGTATCTTGGGGTCATTGTGCAACTCCTTGAGATTGTGACC
TGCCGACCAGATCTTTCCTTGGGCCGTCAGGACCACGCATCTCAGATCCA
AGTTGTCTTTATCTTTTAGCAGGGCGTCCTGAAGGGCACACATCATGTCC
AGTGATAGGGAATTCAGAGTTTTTGGATGATTCAGCGTTATCTCTCGCAC
TCCGTTATGCTCCTTGACCAGGACCAAATCACTGGGTCCATTGCTGGTAA
AGCGAATGACCTGTTGCACGCAACCTGTTGCATATTTTGATATTTTT
BO06419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6984-PA | 858 | CG6984-RA | 27..855 | 847..19 | 4145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6984-RA | 1030 | CG6984-RA | 56..884 | 847..19 | 4145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:10:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17092039..17092492 | 847..394 | 2270 | 100 | Minus |
2R | 25286936 | 2R | 17092548..17092924 | 395..19 | 1885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:10:04 has no hits.
BO06419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:01 Download gff for
BO06419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6984-PA | 27..858 | 15..847 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:30 Download gff for
BO06419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6984-PA | 27..858 | 15..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:00 Download gff for
BO06419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6984-RA | 56..887 | 15..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:45 Download gff for
BO06419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6984-RA | 56..887 | 15..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:45 Download gff for
BO06419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17092039..17092491 | 395..847 | 100 | -> | Minus |
2R | 17092549..17092927 | 15..394 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:00 Download gff for
BO06419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12979544..12979996 | 395..847 | 100 | -> | Minus |
arm_2R | 12980054..12980432 | 15..394 | 99 | | Minus |
BO06419.5prime Sequence
782 bp (779 high quality bases) assembled on 2005-12-03
> BO06419.5prime
GAAGTTATCAGTCGACATGTTGCGTATTTTAAACAACTCCTTAAAAATAT
CAAAATATGCAACAGGTTGCGTGCAACAGGTCATTCGCTTTACCAGCAAT
GGACCCAGTGATTTGGTCCTGGTCAAGGAGCATAACGGAGTGCGAGAGAT
AACGCTGAATCATCCAAAAACTCTGAATTCCCTATCACTGGACATGATGT
GTGCCCTTCAGGACGCCCTGCTAAAAGATAAAGACAACTTGGATCTGAGA
TGCGTGGTCCTGACGGCCCAAGGAAAGATCTGGTCGGCAGGTCACAATCT
CAAGGAGTTGCACAATGACCCCAAGATACAGGCTTGTGTGTTCCAGAAGC
TAACCGATGTTATAAACGACATCCAAAGACTGCCGGTGCCCGTACTAGGA
AAAGTCAATGGCTATGCGGCTGCTGCAGGCTGCCAACTGGTGGTGTCATG
TGACATGGTAGTCTGCACCAAGAACAGCAAGTTCTCTACTCCAGGGGCTG
GAGTCGGAGTTTTTTGCTCAACACCCGGAGTCGCAGTTGCCCGGATTATG
TCGCGTCCAAAGTCCGCCTATATGCTAATGACCGGTCTTCCCGTTACTGG
TGAAGAAGCCTACATATCGGGAATGGTCACCAAAGCTGTTCCTGCAGAGG
AACTAGATAAGGAGATCGAGGAAATCACCAATGCCATAAAGGCAAAAAGT
CGTGCCGTCATCTCTCTGGGAAAAGAGTTCTACTACAAGCAACTGGCCAT
GTCCCAAGCGGAAGCCTTTTCGGCTGCGCAGG
BO06419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6984-PA | 858 | CG6984-RA | 1..766 | 17..782 | 3830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6984-RA | 1030 | CG6984-RA | 30..795 | 17..782 | 3830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17092013..17092492 | 17..496 | 2400 | 100 | Plus |
2R | 25286936 | 2R | 17092548..17092835 | 495..782 | 1440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:34:38 has no hits.
BO06419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:02 Download gff for
BO06419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6984-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:31 Download gff for
BO06419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6984-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:54 Download gff for
BO06419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6984-RA | 30..795 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:14 Download gff for
BO06419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6984-RA | 30..795 | 17..782 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:14 Download gff for
BO06419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17092013..17092491 | 17..495 | 100 | -> | Plus |
2R | 17092549..17092835 | 496..782 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:54 Download gff for
BO06419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12979518..12979996 | 17..495 | 100 | -> | Plus |
arm_2R | 12980054..12980340 | 496..782 | 100 | | Plus |
BO06419.complete Sequence
889 bp (889 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630390
> BO06419.complete
GAAGTTATCAGTCGACATGTTGCGTATTTTAAACAACTCCTTAAAAATAT
CAAAATATGCAACAGGTTGCGTGCAACAGGTCATTCGCTTTACCAGCAAT
GGACCCAGTGATTTGGTCCTGGTCAAGGAGCATAACGGAGTGCGAGAGAT
AACGCTGAATCATCCAAAAACTCTGAATTCCCTATCACTGGACATGATGT
GTGCCCTTCAGGACGCCCTGCTAAAAGATAAAGACAACTTGGATCTGAGA
TGCGTGGTCCTGACGGCCCAAGGAAAGATCTGGTCGGCAGGTCACAATCT
CAAGGAGTTGCACAATGACCCCAAGATACAGGCTTGTGTGTTCCAGAAGC
TAACCGATGTTATAAACGACATCCAAAGACTGCCGGTGCCCGTACTAGGA
AAAGTCAATGGCTATGCGGCTGCTGCAGGCTGCCAACTGGTGGTGTCATG
TGACATGGTAGTCTGCACCAAGAACAGCAAGTTCTCTACTCCAGGGGCTG
GAGTCGGAGTTTTTTGCTCAACACCCGGAGTCGCAGTTGCCCGGATTATG
TCGCGTCCAAAGTCCGCCTATATGCTAATGACCGGTCTTCCCGTTACTGG
TGAAGAAGCCTACATATCGGGAATGGTCACCAAAGCTGTTCCTGCAGAGG
AACTAGATAAGGAGATCGAGGAAATCACCAATGCCATAAAGGCAAAAAGT
CGTGCCGTCATCTCTCTGGGAAAAGAGTTCTACTACAAGCAACTGGCCAT
GTCCCAAGCGGAAGCCTTTTCGGCTGCGCAGGAGAAGATGTGCGAAAATT
TCCAGCTGGGCGACACCAAAGAGGGCATTGCTAGCTTCTTCGAGAAGCGC
CCACCCAACTGGAAGCACCAGGCAAGCTTTCTAGACCAT
BO06419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6984-RA | 858 | CG6984-PA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6984-RA | 1030 | CG6984-RA | 30..884 | 17..871 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17092013..17092492 | 17..496 | 2400 | 100 | Plus |
2R | 25286936 | 2R | 17092548..17092924 | 495..871 | 1885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:00:45 has no hits.
BO06419.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:58 Download gff for
BO06419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6984-RA | 1..858 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:05 Download gff for
BO06419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6984-RA | 2..861 | 15..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:26 Download gff for
BO06419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6984-RA | 35..884 | 22..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:58 Download gff for
BO06419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6984-RA | 2..861 | 15..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:21 Download gff for
BO06419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6984-RA | 35..884 | 22..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:21 Download gff for
BO06419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17092018..17092491 | 22..495 | 100 | -> | Plus |
2R | 17092549..17092924 | 496..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:26 Download gff for
BO06419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12979523..12979996 | 22..495 | 100 | -> | Plus |
arm_2R | 12980054..12980429 | 496..873 | 99 | | Plus |
BO06419.pep Sequence
Translation from 16 to 889
> BO06419.pep
MLRILNNSLKISKYATGCVQQVIRFTSNGPSDLVLVKEHNGVREITLNHP
KTLNSLSLDMMCALQDALLKDKDNLDLRCVVLTAQGKIWSAGHNLKELHN
DPKIQACVFQKLTDVINDIQRLPVPVLGKVNGYAAAAGCQLVVSCDMVVC
TKNSKFSTPGAGVGVFCSTPGVAVARIMSRPKSAYMLMTGLPVTGEEAYI
SGMVTKAVPAEELDKEIEEITNAIKAKSRAVISLGKEFYYKQLAMSQAEA
FSAAQEKMCENFQLGDTKEGIASFFEKRPPNWKHQASFLDH
BO06419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6984-PA | 285 | CG6984-PA | 1..285 | 1..285 | 1467 | 100 | Plus |
CG6543-PA | 295 | CG6543-PA | 48..295 | 38..285 | 297 | 28.9 | Plus |
CG6543-PB | 295 | CG6543-PB | 48..295 | 38..285 | 297 | 28.9 | Plus |
CG8778-PA | 299 | CG8778-PA | 32..297 | 29..283 | 185 | 26.3 | Plus |