Clone BO06419 Report

Search the DGRC for BO06419

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG6984-RA
Protein status:BO06419.pep: validated full length
Sequenced Size:889

Clone Sequence Records

BO06419.3prime Sequence

847 bp (845 high quality bases) assembled on 2005-12-03

> BO06419.3prime
ATGGTCTAGAAAGCTTGCCTGGTGCTTCCAGTTGGGTGGGCGCTTCTCGA
AGAAGCTAGCAATGCCCTCTTTGGTGTCGCCCAGCTGGAAATTTTCGCAC
ATCTTCTCCTGCGCAGCCGAAAAGGCTTCCGCTTGGGACATGGCCAGTTG
CTTGTAGTAGAACTCTTTTCCCAGAGAGATGACGGCACGACTTTTTGCCT
TTATGGCATTGGTGATTTCCTCGATCTCCTTATCTAGTTCCTCTGCAGGA
ACAGCTTTGGTGACCATTCCCGATATGTAGGCTTCTTCACCAGTAACGGG
AAGACCGGTCATTAGCATATAGGCGGACTTTGGACGCGACATAATCCGGG
CAACTGCGACTCCGGGTGTTGAGCAAAAAACTCCGACTCCAGCCCCTGGA
GTAGAGAACTTGCTGTTCTTGGTGCAGACTACCATGTCACATGACACCAC
CAGTTGGCAGCCTGCAGCAGCCGCATAGCCATTGACTTTTCCTAGTACGG
GCACCGGCAGTCTTTGGATGTCGTTTATAACATCGGTTAGCTTCTGGAAC
ACACAAGCCTGTATCTTGGGGTCATTGTGCAACTCCTTGAGATTGTGACC
TGCCGACCAGATCTTTCCTTGGGCCGTCAGGACCACGCATCTCAGATCCA
AGTTGTCTTTATCTTTTAGCAGGGCGTCCTGAAGGGCACACATCATGTCC
AGTGATAGGGAATTCAGAGTTTTTGGATGATTCAGCGTTATCTCTCGCAC
TCCGTTATGCTCCTTGACCAGGACCAAATCACTGGGTCCATTGCTGGTAA
AGCGAATGACCTGTTGCACGCAACCTGTTGCATATTTTGATATTTTT

BO06419.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6984-PA 858 CG6984-RA 27..855 847..19 4145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6984-RA 1030 CG6984-RA 56..884 847..19 4145 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17092039..17092492 847..394 2270 100 Minus
2R 25286936 2R 17092548..17092924 395..19 1885 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:10:04 has no hits.

BO06419.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:01 Download gff for BO06419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6984-PA 27..858 15..847 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:30 Download gff for BO06419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6984-PA 27..858 15..847 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:00 Download gff for BO06419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6984-RA 56..887 15..847 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:45 Download gff for BO06419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6984-RA 56..887 15..847 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:45 Download gff for BO06419.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17092039..17092491 395..847 100 -> Minus
2R 17092549..17092927 15..394 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:00 Download gff for BO06419.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12979544..12979996 395..847 100 -> Minus
arm_2R 12980054..12980432 15..394 99   Minus

BO06419.5prime Sequence

782 bp (779 high quality bases) assembled on 2005-12-03

> BO06419.5prime
GAAGTTATCAGTCGACATGTTGCGTATTTTAAACAACTCCTTAAAAATAT
CAAAATATGCAACAGGTTGCGTGCAACAGGTCATTCGCTTTACCAGCAAT
GGACCCAGTGATTTGGTCCTGGTCAAGGAGCATAACGGAGTGCGAGAGAT
AACGCTGAATCATCCAAAAACTCTGAATTCCCTATCACTGGACATGATGT
GTGCCCTTCAGGACGCCCTGCTAAAAGATAAAGACAACTTGGATCTGAGA
TGCGTGGTCCTGACGGCCCAAGGAAAGATCTGGTCGGCAGGTCACAATCT
CAAGGAGTTGCACAATGACCCCAAGATACAGGCTTGTGTGTTCCAGAAGC
TAACCGATGTTATAAACGACATCCAAAGACTGCCGGTGCCCGTACTAGGA
AAAGTCAATGGCTATGCGGCTGCTGCAGGCTGCCAACTGGTGGTGTCATG
TGACATGGTAGTCTGCACCAAGAACAGCAAGTTCTCTACTCCAGGGGCTG
GAGTCGGAGTTTTTTGCTCAACACCCGGAGTCGCAGTTGCCCGGATTATG
TCGCGTCCAAAGTCCGCCTATATGCTAATGACCGGTCTTCCCGTTACTGG
TGAAGAAGCCTACATATCGGGAATGGTCACCAAAGCTGTTCCTGCAGAGG
AACTAGATAAGGAGATCGAGGAAATCACCAATGCCATAAAGGCAAAAAGT
CGTGCCGTCATCTCTCTGGGAAAAGAGTTCTACTACAAGCAACTGGCCAT
GTCCCAAGCGGAAGCCTTTTCGGCTGCGCAGG

BO06419.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6984-PA 858 CG6984-RA 1..766 17..782 3830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6984-RA 1030 CG6984-RA 30..795 17..782 3830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17092013..17092492 17..496 2400 100 Plus
2R 25286936 2R 17092548..17092835 495..782 1440 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:34:38 has no hits.

BO06419.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:02 Download gff for BO06419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6984-PA 1..766 17..782 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:31 Download gff for BO06419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6984-PA 1..766 17..782 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:54 Download gff for BO06419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6984-RA 30..795 17..782 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:14 Download gff for BO06419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6984-RA 30..795 17..782 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:14 Download gff for BO06419.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17092013..17092491 17..495 100 -> Plus
2R 17092549..17092835 496..782 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:54 Download gff for BO06419.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12979518..12979996 17..495 100 -> Plus
arm_2R 12980054..12980340 496..782 100   Plus

BO06419.complete Sequence

889 bp (889 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630390

> BO06419.complete
GAAGTTATCAGTCGACATGTTGCGTATTTTAAACAACTCCTTAAAAATAT
CAAAATATGCAACAGGTTGCGTGCAACAGGTCATTCGCTTTACCAGCAAT
GGACCCAGTGATTTGGTCCTGGTCAAGGAGCATAACGGAGTGCGAGAGAT
AACGCTGAATCATCCAAAAACTCTGAATTCCCTATCACTGGACATGATGT
GTGCCCTTCAGGACGCCCTGCTAAAAGATAAAGACAACTTGGATCTGAGA
TGCGTGGTCCTGACGGCCCAAGGAAAGATCTGGTCGGCAGGTCACAATCT
CAAGGAGTTGCACAATGACCCCAAGATACAGGCTTGTGTGTTCCAGAAGC
TAACCGATGTTATAAACGACATCCAAAGACTGCCGGTGCCCGTACTAGGA
AAAGTCAATGGCTATGCGGCTGCTGCAGGCTGCCAACTGGTGGTGTCATG
TGACATGGTAGTCTGCACCAAGAACAGCAAGTTCTCTACTCCAGGGGCTG
GAGTCGGAGTTTTTTGCTCAACACCCGGAGTCGCAGTTGCCCGGATTATG
TCGCGTCCAAAGTCCGCCTATATGCTAATGACCGGTCTTCCCGTTACTGG
TGAAGAAGCCTACATATCGGGAATGGTCACCAAAGCTGTTCCTGCAGAGG
AACTAGATAAGGAGATCGAGGAAATCACCAATGCCATAAAGGCAAAAAGT
CGTGCCGTCATCTCTCTGGGAAAAGAGTTCTACTACAAGCAACTGGCCAT
GTCCCAAGCGGAAGCCTTTTCGGCTGCGCAGGAGAAGATGTGCGAAAATT
TCCAGCTGGGCGACACCAAAGAGGGCATTGCTAGCTTCTTCGAGAAGCGC
CCACCCAACTGGAAGCACCAGGCAAGCTTTCTAGACCAT

BO06419.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6984-RA 858 CG6984-PA 1..855 17..871 4275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6984-RA 1030 CG6984-RA 30..884 17..871 4275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17092013..17092492 17..496 2400 100 Plus
2R 25286936 2R 17092548..17092924 495..871 1885 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:00:45 has no hits.

BO06419.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:58 Download gff for BO06419.complete
Subject Subject Range Query Range Percent Splice Strand
CG6984-RA 1..858 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:05 Download gff for BO06419.complete
Subject Subject Range Query Range Percent Splice Strand
CG6984-RA 2..861 15..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:26 Download gff for BO06419.complete
Subject Subject Range Query Range Percent Splice Strand
CG6984-RA 35..884 22..873 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:58 Download gff for BO06419.complete
Subject Subject Range Query Range Percent Splice Strand
CG6984-RA 2..861 15..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:21 Download gff for BO06419.complete
Subject Subject Range Query Range Percent Splice Strand
CG6984-RA 35..884 22..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:21 Download gff for BO06419.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17092018..17092491 22..495 100 -> Plus
2R 17092549..17092924 496..873 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:26 Download gff for BO06419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12979523..12979996 22..495 100 -> Plus
arm_2R 12980054..12980429 496..873 99   Plus

BO06419.pep Sequence

Translation from 16 to 889

> BO06419.pep
MLRILNNSLKISKYATGCVQQVIRFTSNGPSDLVLVKEHNGVREITLNHP
KTLNSLSLDMMCALQDALLKDKDNLDLRCVVLTAQGKIWSAGHNLKELHN
DPKIQACVFQKLTDVINDIQRLPVPVLGKVNGYAAAAGCQLVVSCDMVVC
TKNSKFSTPGAGVGVFCSTPGVAVARIMSRPKSAYMLMTGLPVTGEEAYI
SGMVTKAVPAEELDKEIEEITNAIKAKSRAVISLGKEFYYKQLAMSQAEA
FSAAQEKMCENFQLGDTKEGIASFFEKRPPNWKHQASFLDH

BO06419.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6984-PA 285 CG6984-PA 1..285 1..285 1467 100 Plus
CG6543-PA 295 CG6543-PA 48..295 38..285 297 28.9 Plus
CG6543-PB 295 CG6543-PB 48..295 38..285 297 28.9 Plus
CG8778-PA 299 CG8778-PA 32..297 29..283 185 26.3 Plus