Clone Sequence Records
BO06420.3prime Sequence
977 bp (725 high quality bases) assembled on 2005-12-03
> BO06420.3prime
ATGGTCTAGAAAGCTTGCGTGTACAACTAGAGTGGCACTCTTCGAATTCT
CCAAGTACTTGTCTTTGTACTGATCGAATAACTTCTCCAGCGACTCAATG
ACCTGTCCATGCACTTTATCCACATACTCCGAGTCTGGGTGCTCGTTCTT
AACAACATCGATGGGAGCACCAACAACTTGGACAATGCGTCGTCGGAATG
GGAGGAAGCCAAAGGTGTAGTTGAAGAATCCGCGGCCCACAGGAATCAGC
GGAGAGACTCCGGTGAGCTTCTTGACAAAGTCCTGAAACCGTCGGAGCAG
CGAGTTGGGGGGATTTGCCACCTGATCGAAAATGTCCACCTCTCCAAAGG
AAAATGAAGGAACAATCGATGAGCCCGTTCTAATGGCCATTCGCACGAAG
CCTTTCCTATTCTTCAAGGTTAAAATGTACTGCCCAGGATGAGAGTCCAT
GGCTTCCTGGGCACCGCCAACCAGAATGGCCACCGCATTGGAGGTGAAAC
CATCCCGATTATCCTTGTGCTTGGGATCATTTGACTTGCTGAGCATACGG
ATCAGCGCCTCTTTGGACACTGACACCAGACCCCAGCAGCGGAGGACCTC
ACGCATGAACGGAACATGGAAATGCTGATCCAGAGTGCCCAGTTTGGGAC
GCACTTGGGGGAATAGCTCCAGCCACTTGGAGATTTCCAAGCCCATGTTA
ATGCCAATGCCTGTGCCCAGAATTCCGTGGGGAAAGCTGGCCAAGATGTA
GTTCTTAGTAGCTGGCAGTTCGGCTGTTTTCACCAGCTCCACGGGAAAGT
AATCACGATAGTGGCGATGCAAAAGGTTGGTGCGTGTTATCATCCAGCCA
TTGCCATCCACAACGGATTGGGTTTTCTTGTGGTGCACAAAGACGTAGGC
CAAGTAAGTTACCATCAGACTACGCACCAAAAGACCTCCGTAGATCAGTG
ATCCAGCTACCAAAAGGAAGGAAACTG
BO06420.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1942-PA | 1059 | CG1942-RA | 98..1056 | 977..19 | 4795 | 100 | Minus |
CG1946-PA | 681 | CG1946-RA | 154..219 | 543..478 | 255 | 95.4 | Minus |
CG1941-PA | 1059 | CG1941-RA | 541..620 | 534..455 | 200 | 90 | Minus |
CG1941-PA | 1059 | CG1941-RA | 883..917 | 192..158 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1942-RA | 1305 | CG1942-RA | 282..1240 | 977..19 | 4795 | 100 | Minus |
CG1941-RD | 1203 | CG1941-RD | 235..1083 | 903..55 | 1290 | 77.5 | Minus |
CG1941-RC | 1678 | CG1941-RC | 710..1558 | 903..55 | 1290 | 77.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7713304..7713646 | 716..374 | 1715 | 100 | Minus |
2R | 25286936 | 2R | 7713703..7713903 | 374..174 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 7713962..7714117 | 174..19 | 780 | 100 | Minus |
2R | 25286936 | 2R | 7713106..7713238 | 848..716 | 665 | 100 | Minus |
2R | 25286936 | 2R | 7712950..7713048 | 946..848 | 495 | 100 | Minus |
2R | 25286936 | 2R | 7715890..7716199 | 704..395 | 485 | 77.1 | Minus |
2R | 25286936 | 2R | 7711079..7711410 | 711..380 | 430 | 75.3 | Minus |
2R | 25286936 | 2R | 7711481..7711676 | 369..174 | 425 | 81.1 | Minus |
2R | 25286936 | 2R | 7716283..7716478 | 369..174 | 320 | 77.6 | Minus |
2R | 25286936 | 2R | 7710879..7710980 | 817..716 | 225 | 81.4 | Minus |
Blast to na_te.dros performed 2015-02-04 19:56:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 2830..2879 | 381..430 | 115 | 70 | Plus |
BO06420.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:03 Download gff for
BO06420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-PA | 98..1059 | 18..977 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:32 Download gff for
BO06420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-PA | 98..1059 | 18..977 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:50 Download gff for
BO06420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 282..1246 | 10..977 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:34 Download gff for
BO06420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 282..1246 | 10..977 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:34 Download gff for
BO06420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7712859..7712890 | 946..977 | 100 | -> | Minus |
2R | 7712951..7713048 | 848..945 | 100 | -> | Minus |
2R | 7713107..7713238 | 716..847 | 100 | -> | Minus |
2R | 7713305..7713646 | 374..715 | 100 | -> | Minus |
2R | 7713704..7713903 | 174..373 | 100 | -> | Minus |
2R | 7713963..7714123 | 10..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:50 Download gff for
BO06420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3600364..3600395 | 946..977 | 100 | -> | Minus |
arm_2R | 3600456..3600553 | 848..945 | 100 | -> | Minus |
arm_2R | 3600612..3600743 | 716..847 | 100 | -> | Minus |
arm_2R | 3600810..3601151 | 374..715 | 100 | -> | Minus |
arm_2R | 3601209..3601408 | 174..373 | 100 | -> | Minus |
arm_2R | 3601468..3601628 | 10..173 | 97 | | Minus |
BO06420.5prime Sequence
915 bp (773 high quality bases) assembled on 2005-12-03
> BO06420.5prime
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCACCACTGCGGGTTCCTC
TGGAACGCCGACTGCAGATACTGGTCACGGCCTTTTTCACCTCCATGCTG
CTGATACTATTGTCAGTTTCCTTCCTTTTGGTAGCTGGATCACTGATCTA
CGGAGGTCTTTTGGTGCGTAGTCTGATGGTAACTTACTTGGCCTACGTCT
TTGTGCACCACAAGAAAACCCAATCCGTTGTGGATGGCAATGGCTGGATG
ATAACACGCACCAACCTTTTGCATCGCCACTATCGTGATTACTTTCCCGT
GGAGCTGGTGAAAACAGCCGAACTGCCAGCTACTAAGAACTACATCTTGG
CCAGCTTTCCCCACGGAATTCTGGGCACAGGCATTGGCATTAACATGGGC
TTGGAAATCTCCAAGTGGCTGGAGCTATTCCCCCAAGTGCGTCCCAAACT
GGGCACTCTGGATCAGCATTTCCATGTTCCGTTCATGCGTGAGGTCCTCC
GCTGCTGGGGTCTGGTGTCAGTGTCCAAAGAGGCGCTGATCCGTATGCTC
AGCAAGTCAAATGATCCCAAGCACAAGGATAATCGGGATGGTTTCACCTC
CAATGCGGTGGCCATTCTGGTTGGCGGTGCCCAGGAAGCCATGGACTCTC
ATCCTGGGCAGTACATTTTAACCTTGAAGAATAGGAAAGGCTTCGTGCGA
ATGGCCATTAGAACGGGCTCATCGATTGTTTCTTCATTTTCCTTTGGAGA
GGTGGACATTTTCGATCAGGTGGCAAATCCCCCCACTCGCTGCTCCGACG
GTTTCAGGACTTTGTCAAGAAGCTCACCGGAGTCTCTCCGCTGAATCCTG
TGGGCCGCGGATTCTTCAACTACACCTTTGGCTTCCTCCCATCCGACGAC
GCATTGTCCAAGTTG
BO06420.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1942-PA | 1059 | CG1942-RA | 1..769 | 17..785 | 3820 | 99.8 | Plus |
CG1942-PA | 1059 | CG1942-RA | 764..877 | 779..892 | 520 | 98.2 | Plus |
CG1946-PA | 681 | CG1946-RA | 154..219 | 548..613 | 255 | 95.4 | Plus |
CG1941-PA | 1059 | CG1941-RA | 541..620 | 557..636 | 200 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1942-RA | 1305 | CG1942-RA | 182..1085 | 14..915 | 4440 | 99.6 | Plus |
CG1941-RD | 1203 | CG1941-RD | 235..964 | 188..915 | 1110 | 77.5 | Plus |
CG1941-RC | 1678 | CG1941-RC | 710..1439 | 188..915 | 1110 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7713304..7713646 | 375..717 | 1715 | 100 | Plus |
2R | 25286936 | 2R | 7713703..7713903 | 717..915 | 875 | 98 | Plus |
2R | 25286936 | 2R | 7713106..7713238 | 243..375 | 665 | 100 | Plus |
2R | 25286936 | 2R | 7712759..7712890 | 14..145 | 660 | 100 | Plus |
2R | 25286936 | 2R | 7712950..7713048 | 145..243 | 495 | 100 | Plus |
2R | 25286936 | 2R | 7715890..7716199 | 387..696 | 485 | 77.1 | Plus |
2R | 25286936 | 2R | 7711079..7711410 | 380..711 | 430 | 75.3 | Plus |
2R | 25286936 | 2R | 7711481..7711676 | 722..915 | 340 | 80.6 | Plus |
2R | 25286936 | 2R | 7710879..7710980 | 274..375 | 225 | 81.4 | Plus |
2R | 25286936 | 2R | 7716283..7716478 | 722..915 | 220 | 76.5 | Plus |
Blast to na_te.dros performed 2015-02-12 06:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 2830..2879 | 710..661 | 115 | 70 | Minus |
BO06420.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:04 Download gff for
BO06420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-PA | 1..901 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:33 Download gff for
BO06420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-PA | 1..901 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:26 Download gff for
BO06420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 177..1085 | 9..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:26:30 Download gff for
BO06420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 177..1085 | 9..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:26:30 Download gff for
BO06420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7712754..7712890 | 9..145 | 98 | -> | Plus |
2R | 7712951..7713048 | 146..243 | 100 | -> | Plus |
2R | 7713107..7713238 | 244..375 | 100 | -> | Plus |
2R | 7713305..7713646 | 376..717 | 100 | -> | Plus |
2R | 7713704..7713903 | 718..915 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:26 Download gff for
BO06420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3600259..3600395 | 9..145 | 98 | -> | Plus |
arm_2R | 3600456..3600553 | 146..243 | 100 | -> | Plus |
arm_2R | 3600612..3600743 | 244..375 | 100 | -> | Plus |
arm_2R | 3600810..3601151 | 376..717 | 100 | -> | Plus |
arm_2R | 3601209..3601408 | 718..915 | 98 | | Plus |
BO06420.complete Sequence
1090 bp (1090 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ638638
> BO06420.complete
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCACCACTGCGGGTTCCTC
TGGAACGCCGACTGCAGATACTGGTCACGGCCTTTTTCACCTCCATGCTG
CTGATACTATTGTCAGTTTCCTTCCTTTTGGTAGCTGGATCACTGATCTA
CGGAGGTCTTTTGGTGCGTAGTCTGATGGTAACTTACTTGGCCTACGTCT
TTGTGCACCACAAGAAAACCCAATCCGTTGTGGATGGCAATGGCTGGATG
ATAACACGCACCAACCTTTTGCATCGCCACTATCGTGATTACTTTCCCGT
GGAGCTGGTGAAAACAGCCGAACTGCCAGCTACTAAGAACTACATCTTGG
CCAGCTTTCCCCACGGAATTCTGGGCACAGGCATTGGCATTAACATGGGC
TTGGAAATCTCCAAGTGGCTGGAGCTATTCCCCCAAGTGCGTCCCAAACT
GGGCACTCTGGATCAGCATTTCCATGTTCCGTTCATGCGTGAGGTCCTCC
GCTGCTGGGGTCTGGTGTCAGTGTCCAAAGAGGCGCTGATCCGTATGCTC
AGCAAGTCAAATGATCCCAAGCACAAGGATAATCGGGATGGTTTCACCTC
CAATGCGGTGGCCATTCTGGTTGGCGGTGCCCAGGAAGCCATGGACTCTC
ATCCTGGGCAGTACATTTTAACCTTGAAGAATAGGAAAGGCTTCGTGCGA
ATGGCCATTAGAACGGGCTCATCGATTGTTCCTTCATTTTCCTTTGGAGA
GGTGGACATTTTCGATCAGGTGGCAAATCCCCCCAACTCGCTGCTCCGAC
GGTTTCAGGACTTTGTCAAGAAGCTCACCGGAGTCTCTCCGCTGATTCCT
GTGGGCCGCGGATTCTTCAACTACACCTTTGGCTTCCTCCCATTCCGACG
ACGCATTGTCCAAGTTGTTGGTGCTCCCATCGATGTTGTTAAGAACGAGC
ACCCAGACTCGGAGTATGTGGATAAAGTGCATGGACAGGTCATTGAGTCG
CTGGAGAAGTTATTCGATCAGTACAAAGACAAGTACTTGGAGAATTCGAA
GAGTGCCACTCTAGTTGTACACGCAAGCTTTCTAGACCAT
BO06420.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1942-RA | 1059 | CG1942-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
CG1941-RD | 1059 | CG1941-PD | 172..1020 | 188..1036 | 1290 | 76.8 | Plus |
CG1941-RC | 1059 | CG1941-PC | 172..1020 | 188..1036 | 1290 | 76.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1942-RA | 1305 | CG1942-RA | 182..1240 | 14..1072 | 5295 | 100 | Plus |
CG1941-RD | 1203 | CG1941-RD | 235..1083 | 188..1036 | 1290 | 76.8 | Plus |
CG1941-RC | 1678 | CG1941-RC | 710..1558 | 188..1036 | 1290 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7713304..7713646 | 375..717 | 1715 | 100 | Plus |
2R | 25286936 | 2R | 7713703..7713903 | 717..917 | 1005 | 100 | Plus |
2R | 25286936 | 2R | 7713962..7714117 | 917..1072 | 780 | 100 | Plus |
2R | 25286936 | 2R | 7713106..7713238 | 243..375 | 665 | 100 | Plus |
2R | 25286936 | 2R | 7712759..7712890 | 14..145 | 660 | 100 | Plus |
2R | 25286936 | 2R | 7712950..7713048 | 145..243 | 495 | 100 | Plus |
2R | 25286936 | 2R | 7715890..7716199 | 387..696 | 485 | 77.1 | Plus |
2R | 25286936 | 2R | 7711079..7711410 | 380..711 | 430 | 75.3 | Plus |
2R | 25286936 | 2R | 7711481..7711676 | 722..917 | 425 | 81.1 | Plus |
2R | 25286936 | 2R | 7716283..7716478 | 722..917 | 320 | 77.6 | Plus |
2R | 25286936 | 2R | 7710879..7710980 | 274..375 | 225 | 81.4 | Plus |
Blast to na_te.dros performed 2014-11-27 14:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 2830..2879 | 710..661 | 115 | 70 | Minus |
BO06420.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:59 Download gff for
BO06420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 1..1059 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:07 Download gff for
BO06420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 132..1201 | 9..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:17 Download gff for
BO06420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 185..1240 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:59 Download gff for
BO06420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 132..1201 | 9..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:28 Download gff for
BO06420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1942-RA | 185..1240 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:28 Download gff for
BO06420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7712762..7712890 | 17..145 | 100 | -> | Plus |
2R | 7712951..7713048 | 146..243 | 100 | -> | Plus |
2R | 7713107..7713238 | 244..375 | 100 | -> | Plus |
2R | 7713305..7713646 | 376..717 | 100 | -> | Plus |
2R | 7713704..7713903 | 718..917 | 100 | -> | Plus |
2R | 7713963..7714117 | 918..1074 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:17 Download gff for
BO06420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3600456..3600553 | 146..243 | 100 | -> | Plus |
arm_2R | 3600612..3600743 | 244..375 | 100 | -> | Plus |
arm_2R | 3600267..3600395 | 17..145 | 100 | -> | Plus |
arm_2R | 3600810..3601151 | 376..717 | 100 | -> | Plus |
arm_2R | 3601209..3601408 | 718..917 | 100 | -> | Plus |
arm_2R | 3601468..3601622 | 918..1074 | 98 | | Plus |
BO06420.pep Sequence
Translation from 16 to 1090
> BO06420.pep
MKIEWAPLRVPLERRLQILVTAFFTSMLLILLSVSFLLVAGSLIYGGLLV
RSLMVTYLAYVFVHHKKTQSVVDGNGWMITRTNLLHRHYRDYFPVELVKT
AELPATKNYILASFPHGILGTGIGINMGLEISKWLELFPQVRPKLGTLDQ
HFHVPFMREVLRCWGLVSVSKEALIRMLSKSNDPKHKDNRDGFTSNAVAI
LVGGAQEAMDSHPGQYILTLKNRKGFVRMAIRTGSSIVPSFSFGEVDIFD
QVANPPNSLLRRFQDFVKKLTGVSPLIPVGRGFFNYTFGFLPFRRRIVQV
VGAPIDVVKNEHPDSEYVDKVHGQVIESLEKLFDQYKDKYLENSKSATLV
VHASFLDH
BO06420.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1942-PA | 352 | CG1942-PA | 1..352 | 1..352 | 1819 | 100 | Plus |
CG1941-PD | 352 | CG1941-PD | 1..352 | 1..352 | 1376 | 73 | Plus |
CG1941-PC | 352 | CG1941-PC | 1..352 | 1..352 | 1376 | 73 | Plus |
CG1941-PB | 352 | CG1941-PB | 1..352 | 1..352 | 1376 | 73 | Plus |
CG1941-PA | 352 | CG1941-PA | 1..352 | 1..352 | 1376 | 73 | Plus |