Clone BO06420 Report

Search the DGRC for BO06420

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG1942-RA
Protein status:BO06420.pep: validated full length
Sequenced Size:1090

Clone Sequence Records

BO06420.3prime Sequence

977 bp (725 high quality bases) assembled on 2005-12-03

> BO06420.3prime
ATGGTCTAGAAAGCTTGCGTGTACAACTAGAGTGGCACTCTTCGAATTCT
CCAAGTACTTGTCTTTGTACTGATCGAATAACTTCTCCAGCGACTCAATG
ACCTGTCCATGCACTTTATCCACATACTCCGAGTCTGGGTGCTCGTTCTT
AACAACATCGATGGGAGCACCAACAACTTGGACAATGCGTCGTCGGAATG
GGAGGAAGCCAAAGGTGTAGTTGAAGAATCCGCGGCCCACAGGAATCAGC
GGAGAGACTCCGGTGAGCTTCTTGACAAAGTCCTGAAACCGTCGGAGCAG
CGAGTTGGGGGGATTTGCCACCTGATCGAAAATGTCCACCTCTCCAAAGG
AAAATGAAGGAACAATCGATGAGCCCGTTCTAATGGCCATTCGCACGAAG
CCTTTCCTATTCTTCAAGGTTAAAATGTACTGCCCAGGATGAGAGTCCAT
GGCTTCCTGGGCACCGCCAACCAGAATGGCCACCGCATTGGAGGTGAAAC
CATCCCGATTATCCTTGTGCTTGGGATCATTTGACTTGCTGAGCATACGG
ATCAGCGCCTCTTTGGACACTGACACCAGACCCCAGCAGCGGAGGACCTC
ACGCATGAACGGAACATGGAAATGCTGATCCAGAGTGCCCAGTTTGGGAC
GCACTTGGGGGAATAGCTCCAGCCACTTGGAGATTTCCAAGCCCATGTTA
ATGCCAATGCCTGTGCCCAGAATTCCGTGGGGAAAGCTGGCCAAGATGTA
GTTCTTAGTAGCTGGCAGTTCGGCTGTTTTCACCAGCTCCACGGGAAAGT
AATCACGATAGTGGCGATGCAAAAGGTTGGTGCGTGTTATCATCCAGCCA
TTGCCATCCACAACGGATTGGGTTTTCTTGTGGTGCACAAAGACGTAGGC
CAAGTAAGTTACCATCAGACTACGCACCAAAAGACCTCCGTAGATCAGTG
ATCCAGCTACCAAAAGGAAGGAAACTG

BO06420.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1942-PA 1059 CG1942-RA 98..1056 977..19 4795 100 Minus
CG1946-PA 681 CG1946-RA 154..219 543..478 255 95.4 Minus
CG1941-PA 1059 CG1941-RA 541..620 534..455 200 90 Minus
CG1941-PA 1059 CG1941-RA 883..917 192..158 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1942-RA 1305 CG1942-RA 282..1240 977..19 4795 100 Minus
CG1941-RD 1203 CG1941-RD 235..1083 903..55 1290 77.5 Minus
CG1941-RC 1678 CG1941-RC 710..1558 903..55 1290 77.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7713304..7713646 716..374 1715 100 Minus
2R 25286936 2R 7713703..7713903 374..174 1005 100 Minus
2R 25286936 2R 7713962..7714117 174..19 780 100 Minus
2R 25286936 2R 7713106..7713238 848..716 665 100 Minus
2R 25286936 2R 7712950..7713048 946..848 495 100 Minus
2R 25286936 2R 7715890..7716199 704..395 485 77.1 Minus
2R 25286936 2R 7711079..7711410 711..380 430 75.3 Minus
2R 25286936 2R 7711481..7711676 369..174 425 81.1 Minus
2R 25286936 2R 7716283..7716478 369..174 320 77.6 Minus
2R 25286936 2R 7710879..7710980 817..716 225 81.4 Minus
Blast to na_te.dros performed 2015-02-04 19:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 2830..2879 381..430 115 70 Plus

BO06420.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:03 Download gff for BO06420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-PA 98..1059 18..977 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:32 Download gff for BO06420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-PA 98..1059 18..977 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:50 Download gff for BO06420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 282..1246 10..977 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:34 Download gff for BO06420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 282..1246 10..977 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:34 Download gff for BO06420.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7712859..7712890 946..977 100 -> Minus
2R 7712951..7713048 848..945 100 -> Minus
2R 7713107..7713238 716..847 100 -> Minus
2R 7713305..7713646 374..715 100 -> Minus
2R 7713704..7713903 174..373 100 -> Minus
2R 7713963..7714123 10..173 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:50 Download gff for BO06420.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3600364..3600395 946..977 100 -> Minus
arm_2R 3600456..3600553 848..945 100 -> Minus
arm_2R 3600612..3600743 716..847 100 -> Minus
arm_2R 3600810..3601151 374..715 100 -> Minus
arm_2R 3601209..3601408 174..373 100 -> Minus
arm_2R 3601468..3601628 10..173 97   Minus

BO06420.5prime Sequence

915 bp (773 high quality bases) assembled on 2005-12-03

> BO06420.5prime
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCACCACTGCGGGTTCCTC
TGGAACGCCGACTGCAGATACTGGTCACGGCCTTTTTCACCTCCATGCTG
CTGATACTATTGTCAGTTTCCTTCCTTTTGGTAGCTGGATCACTGATCTA
CGGAGGTCTTTTGGTGCGTAGTCTGATGGTAACTTACTTGGCCTACGTCT
TTGTGCACCACAAGAAAACCCAATCCGTTGTGGATGGCAATGGCTGGATG
ATAACACGCACCAACCTTTTGCATCGCCACTATCGTGATTACTTTCCCGT
GGAGCTGGTGAAAACAGCCGAACTGCCAGCTACTAAGAACTACATCTTGG
CCAGCTTTCCCCACGGAATTCTGGGCACAGGCATTGGCATTAACATGGGC
TTGGAAATCTCCAAGTGGCTGGAGCTATTCCCCCAAGTGCGTCCCAAACT
GGGCACTCTGGATCAGCATTTCCATGTTCCGTTCATGCGTGAGGTCCTCC
GCTGCTGGGGTCTGGTGTCAGTGTCCAAAGAGGCGCTGATCCGTATGCTC
AGCAAGTCAAATGATCCCAAGCACAAGGATAATCGGGATGGTTTCACCTC
CAATGCGGTGGCCATTCTGGTTGGCGGTGCCCAGGAAGCCATGGACTCTC
ATCCTGGGCAGTACATTTTAACCTTGAAGAATAGGAAAGGCTTCGTGCGA
ATGGCCATTAGAACGGGCTCATCGATTGTTTCTTCATTTTCCTTTGGAGA
GGTGGACATTTTCGATCAGGTGGCAAATCCCCCCACTCGCTGCTCCGACG
GTTTCAGGACTTTGTCAAGAAGCTCACCGGAGTCTCTCCGCTGAATCCTG
TGGGCCGCGGATTCTTCAACTACACCTTTGGCTTCCTCCCATCCGACGAC
GCATTGTCCAAGTTG

BO06420.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1942-PA 1059 CG1942-RA 1..769 17..785 3820 99.8 Plus
CG1942-PA 1059 CG1942-RA 764..877 779..892 520 98.2 Plus
CG1946-PA 681 CG1946-RA 154..219 548..613 255 95.4 Plus
CG1941-PA 1059 CG1941-RA 541..620 557..636 200 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1942-RA 1305 CG1942-RA 182..1085 14..915 4440 99.6 Plus
CG1941-RD 1203 CG1941-RD 235..964 188..915 1110 77.5 Plus
CG1941-RC 1678 CG1941-RC 710..1439 188..915 1110 77.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7713304..7713646 375..717 1715 100 Plus
2R 25286936 2R 7713703..7713903 717..915 875 98 Plus
2R 25286936 2R 7713106..7713238 243..375 665 100 Plus
2R 25286936 2R 7712759..7712890 14..145 660 100 Plus
2R 25286936 2R 7712950..7713048 145..243 495 100 Plus
2R 25286936 2R 7715890..7716199 387..696 485 77.1 Plus
2R 25286936 2R 7711079..7711410 380..711 430 75.3 Plus
2R 25286936 2R 7711481..7711676 722..915 340 80.6 Plus
2R 25286936 2R 7710879..7710980 274..375 225 81.4 Plus
2R 25286936 2R 7716283..7716478 722..915 220 76.5 Plus
Blast to na_te.dros performed 2015-02-12 06:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 2830..2879 710..661 115 70 Minus

BO06420.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:04 Download gff for BO06420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-PA 1..901 17..915 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:33 Download gff for BO06420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-PA 1..901 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:26 Download gff for BO06420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 177..1085 9..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:26:30 Download gff for BO06420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 177..1085 9..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:26:30 Download gff for BO06420.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7712754..7712890 9..145 98 -> Plus
2R 7712951..7713048 146..243 100 -> Plus
2R 7713107..7713238 244..375 100 -> Plus
2R 7713305..7713646 376..717 100 -> Plus
2R 7713704..7713903 718..915 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:26 Download gff for BO06420.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3600259..3600395 9..145 98 -> Plus
arm_2R 3600456..3600553 146..243 100 -> Plus
arm_2R 3600612..3600743 244..375 100 -> Plus
arm_2R 3600810..3601151 376..717 100 -> Plus
arm_2R 3601209..3601408 718..915 98   Plus

BO06420.complete Sequence

1090 bp (1090 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ638638

> BO06420.complete
GAAGTTATCAGTCGACATGAAAATCGAGTGGGCACCACTGCGGGTTCCTC
TGGAACGCCGACTGCAGATACTGGTCACGGCCTTTTTCACCTCCATGCTG
CTGATACTATTGTCAGTTTCCTTCCTTTTGGTAGCTGGATCACTGATCTA
CGGAGGTCTTTTGGTGCGTAGTCTGATGGTAACTTACTTGGCCTACGTCT
TTGTGCACCACAAGAAAACCCAATCCGTTGTGGATGGCAATGGCTGGATG
ATAACACGCACCAACCTTTTGCATCGCCACTATCGTGATTACTTTCCCGT
GGAGCTGGTGAAAACAGCCGAACTGCCAGCTACTAAGAACTACATCTTGG
CCAGCTTTCCCCACGGAATTCTGGGCACAGGCATTGGCATTAACATGGGC
TTGGAAATCTCCAAGTGGCTGGAGCTATTCCCCCAAGTGCGTCCCAAACT
GGGCACTCTGGATCAGCATTTCCATGTTCCGTTCATGCGTGAGGTCCTCC
GCTGCTGGGGTCTGGTGTCAGTGTCCAAAGAGGCGCTGATCCGTATGCTC
AGCAAGTCAAATGATCCCAAGCACAAGGATAATCGGGATGGTTTCACCTC
CAATGCGGTGGCCATTCTGGTTGGCGGTGCCCAGGAAGCCATGGACTCTC
ATCCTGGGCAGTACATTTTAACCTTGAAGAATAGGAAAGGCTTCGTGCGA
ATGGCCATTAGAACGGGCTCATCGATTGTTCCTTCATTTTCCTTTGGAGA
GGTGGACATTTTCGATCAGGTGGCAAATCCCCCCAACTCGCTGCTCCGAC
GGTTTCAGGACTTTGTCAAGAAGCTCACCGGAGTCTCTCCGCTGATTCCT
GTGGGCCGCGGATTCTTCAACTACACCTTTGGCTTCCTCCCATTCCGACG
ACGCATTGTCCAAGTTGTTGGTGCTCCCATCGATGTTGTTAAGAACGAGC
ACCCAGACTCGGAGTATGTGGATAAAGTGCATGGACAGGTCATTGAGTCG
CTGGAGAAGTTATTCGATCAGTACAAAGACAAGTACTTGGAGAATTCGAA
GAGTGCCACTCTAGTTGTACACGCAAGCTTTCTAGACCAT

BO06420.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1942-RA 1059 CG1942-PA 1..1056 17..1072 5280 100 Plus
CG1941-RD 1059 CG1941-PD 172..1020 188..1036 1290 76.8 Plus
CG1941-RC 1059 CG1941-PC 172..1020 188..1036 1290 76.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1942-RA 1305 CG1942-RA 182..1240 14..1072 5295 100 Plus
CG1941-RD 1203 CG1941-RD 235..1083 188..1036 1290 76.8 Plus
CG1941-RC 1678 CG1941-RC 710..1558 188..1036 1290 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7713304..7713646 375..717 1715 100 Plus
2R 25286936 2R 7713703..7713903 717..917 1005 100 Plus
2R 25286936 2R 7713962..7714117 917..1072 780 100 Plus
2R 25286936 2R 7713106..7713238 243..375 665 100 Plus
2R 25286936 2R 7712759..7712890 14..145 660 100 Plus
2R 25286936 2R 7712950..7713048 145..243 495 100 Plus
2R 25286936 2R 7715890..7716199 387..696 485 77.1 Plus
2R 25286936 2R 7711079..7711410 380..711 430 75.3 Plus
2R 25286936 2R 7711481..7711676 722..917 425 81.1 Plus
2R 25286936 2R 7716283..7716478 722..917 320 77.6 Plus
2R 25286936 2R 7710879..7710980 274..375 225 81.4 Plus
Blast to na_te.dros performed 2014-11-27 14:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 2830..2879 710..661 115 70 Minus

BO06420.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:59 Download gff for BO06420.complete
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 1..1059 17..1073 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:07 Download gff for BO06420.complete
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 132..1201 9..1081 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:17 Download gff for BO06420.complete
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 185..1240 17..1074 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:59 Download gff for BO06420.complete
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 132..1201 9..1081 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:28 Download gff for BO06420.complete
Subject Subject Range Query Range Percent Splice Strand
CG1942-RA 185..1240 17..1074 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:28 Download gff for BO06420.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7712762..7712890 17..145 100 -> Plus
2R 7712951..7713048 146..243 100 -> Plus
2R 7713107..7713238 244..375 100 -> Plus
2R 7713305..7713646 376..717 100 -> Plus
2R 7713704..7713903 718..917 100 -> Plus
2R 7713963..7714117 918..1074 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:17 Download gff for BO06420.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3600456..3600553 146..243 100 -> Plus
arm_2R 3600612..3600743 244..375 100 -> Plus
arm_2R 3600267..3600395 17..145 100 -> Plus
arm_2R 3600810..3601151 376..717 100 -> Plus
arm_2R 3601209..3601408 718..917 100 -> Plus
arm_2R 3601468..3601622 918..1074 98   Plus

BO06420.pep Sequence

Translation from 16 to 1090

> BO06420.pep
MKIEWAPLRVPLERRLQILVTAFFTSMLLILLSVSFLLVAGSLIYGGLLV
RSLMVTYLAYVFVHHKKTQSVVDGNGWMITRTNLLHRHYRDYFPVELVKT
AELPATKNYILASFPHGILGTGIGINMGLEISKWLELFPQVRPKLGTLDQ
HFHVPFMREVLRCWGLVSVSKEALIRMLSKSNDPKHKDNRDGFTSNAVAI
LVGGAQEAMDSHPGQYILTLKNRKGFVRMAIRTGSSIVPSFSFGEVDIFD
QVANPPNSLLRRFQDFVKKLTGVSPLIPVGRGFFNYTFGFLPFRRRIVQV
VGAPIDVVKNEHPDSEYVDKVHGQVIESLEKLFDQYKDKYLENSKSATLV
VHASFLDH

BO06420.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1942-PA 352 CG1942-PA 1..352 1..352 1819 100 Plus
CG1941-PD 352 CG1941-PD 1..352 1..352 1376 73 Plus
CG1941-PC 352 CG1941-PC 1..352 1..352 1376 73 Plus
CG1941-PB 352 CG1941-PB 1..352 1..352 1376 73 Plus
CG1941-PA 352 CG1941-PA 1..352 1..352 1376 73 Plus