Clone Sequence Records
BO06423.3prime Sequence
677 bp (676 high quality bases) assembled on 2005-12-03
> BO06423.3prime
ATGGTCTAGAAAGCTTGCCATGACGTAGGCACGTCGCATCATCAGATCAA
AAAACATATCGTTGTCAATTGAGGCACTAATGGTGGCATAATAGTTGACA
AACTCCTCGCGGGTTATCTTTCCATCCAGGTTTCCTCGACCTCCCTCAAA
GTTGTGCAAAAAGTCGGTAAGAATTTCATCCTCAGACTTTTCTCCAGACT
GGTACTTGGGATGTTCTTTTACAGAGTACACGTTCTTAAGATCTTGAATG
GTAATTACTCCATCTTCATCACGATCCATTTTGTTGAACGCCTGATCAAT
AATATTCAAACGACTCTGCGGCATGGGGGGCCTTAGTTTAAGCAGGAACT
CGGTCATATTAATCGATCCACTGCCATCCTCATCAAACGTGGCGAACATC
TGCTTGATCTCCTCCTCCGACACATCCAATCCGGTGTCCCTAATGCCAGT
GATGAACTCCTCCTCATTCAGAGCCTTGCTACCATCGTCGTCCATCGCCC
GGAAGGCCCTGCCCAATCCCAGTATGCCTGTTGCTCCGCGGCTGAGGCAC
AGCAATCGCAGCTTGGTAATGGGATCCTTGTCCTCGCCATCTGTCAGTTC
CCGGAGCGCTTGACTCGCCATGTTGGCCTCCAGGGTGTAGAGGTCACAGT
TCGGGTTCTCCATGTCGACTGATAACT
BO06423.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10126-PA | 648 | CG10126-RA | 1..645 | 663..19 | 3225 | 100 | Minus |
CG10126-PB | 684 | CG10126-RB | 41..681 | 659..19 | 3205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10126-RA | 907 | CG10126-RA | 136..782 | 665..19 | 3235 | 100 | Minus |
CG10126-RB | 835 | CG10126-RB | 70..710 | 659..19 | 3205 | 100 | Minus |
CG31345-RA | 984 | CG31345-RA | 217..347 | 583..453 | 190 | 76.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12855825..12856038 | 118..331 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 12856456..12856607 | 508..659 | 760 | 100 | Plus |
3R | 32079331 | 3R | 12856241..12856367 | 387..513 | 635 | 100 | Plus |
3R | 32079331 | 3R | 12855669..12855769 | 19..119 | 505 | 100 | Plus |
3R | 32079331 | 3R | 12856130..12856187 | 331..388 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:10:10 has no hits.
BO06423.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:07 Download gff for
BO06423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-PA | 1..648 | 15..663 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:38 Download gff for
BO06423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-PA | 1..648 | 15..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:01 Download gff for
BO06423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 136..787 | 12..665 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:12:00 Download gff for
BO06423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 136..787 | 12..665 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:12:00 Download gff for
BO06423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12855664..12855767 | 12..117 | 97 | <- | Plus |
3R | 12855825..12856037 | 118..330 | 100 | <- | Plus |
3R | 12856130..12856187 | 331..388 | 100 | <- | Plus |
3R | 12856243..12856362 | 389..508 | 100 | <- | Plus |
3R | 12856457..12856607 | 509..659 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:01 Download gff for
BO06423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8682179..8682329 | 509..659 | 100 | | Plus |
arm_3R | 8681386..8681489 | 12..117 | 97 | <- | Plus |
arm_3R | 8681547..8681759 | 118..330 | 100 | <- | Plus |
arm_3R | 8681852..8681909 | 331..388 | 100 | <- | Plus |
arm_3R | 8681965..8682084 | 389..508 | 100 | <- | Plus |
BO06423.5prime Sequence
677 bp (676 high quality bases) assembled on 2005-12-03
> BO06423.5prime
GAAGTTATCAGTCGACATGGAGAACCCGAACTGTGACCTCTACACCCTGG
AGGCCAACATGGCGAGTCAAGCGCTCCGGGAACTGACAGATGGCGAGGAC
AAGGATCCCATTACCAAGCTGCGATTGCTGTGCCTCAGCCGCGGAGCAAC
AGGCATACTGGGATTGGGCAGGGCCTTCCGGGCGATGGACGACGATGGTA
GCAAGGCTCTGAATGAGGAGGAGTTCATCACTGGCATTAGGGACACCGGA
TTGGATGTGTCGGAGGAGGAGATCAAGCAGATGTTCGCCACGTTTGATGA
GGATGGCAGTGGATCGATTAATATGACCGAGTTCCTGCTTAAACTAAGGC
CCCCCATGCCGCAGAGTCGTTTGAATATTATTGATCAGGCGTTCAACAAA
ATGGATCGTGATGAAGATGGAGTAATTACCATTCAAGATCTTAAGAACGT
GTACTCTGTAAAAGAACATCCCAAGTACCAGTCTGGAGAAAAGTCTGAGG
ATGAAATTCTTACCGACTTTTTGCACAACTTTGAGGGAGGTCGAGGAAAC
CTGGATGGAAAGATAACCCGCGAGGAGTTTGTCAACTATTATGCCACCAT
TAGTGCCTCAATTGACAACGATATGTTTTTTGATCTGATGATGCGACGTG
CCTACGTCATGGCAAGCTTTCTAGACC
BO06423.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10126-PA | 648 | CG10126-RA | 1..645 | 17..661 | 3225 | 100 | Plus |
CG10126-PB | 684 | CG10126-RB | 41..681 | 21..661 | 3205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10126-RA | 907 | CG10126-RA | 136..782 | 15..661 | 3235 | 100 | Plus |
CG10126-RB | 835 | CG10126-RB | 70..710 | 21..661 | 3205 | 100 | Plus |
CG31345-RA | 984 | CG31345-RA | 217..347 | 97..227 | 190 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12855825..12856038 | 562..349 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 12856456..12856607 | 172..21 | 760 | 100 | Minus |
3R | 32079331 | 3R | 12856241..12856367 | 293..167 | 635 | 100 | Minus |
3R | 32079331 | 3R | 12855669..12855769 | 661..561 | 505 | 100 | Minus |
3R | 32079331 | 3R | 12856130..12856187 | 349..292 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:04:00 has no hits.
BO06423.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:08 Download gff for
BO06423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-PA | 1..648 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:39 Download gff for
BO06423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-PA | 1..648 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:36 Download gff for
BO06423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 136..787 | 15..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:37 Download gff for
BO06423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 136..787 | 15..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:37 Download gff for
BO06423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12855825..12856037 | 350..562 | 100 | <- | Minus |
3R | 12856130..12856187 | 292..349 | 100 | <- | Minus |
3R | 12856243..12856362 | 172..291 | 100 | <- | Minus |
3R | 12856457..12856607 | 21..171 | 100 | | Minus |
3R | 12855664..12855767 | 563..668 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:36 Download gff for
BO06423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8681386..8681489 | 563..668 | 97 | <- | Minus |
arm_3R | 8681547..8681759 | 350..562 | 100 | <- | Minus |
arm_3R | 8681852..8681909 | 292..349 | 100 | <- | Minus |
arm_3R | 8681965..8682084 | 172..291 | 100 | <- | Minus |
arm_3R | 8682179..8682329 | 21..171 | 100 | | Minus |
BO06423.complete Sequence
679 bp (679 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630391
> BO06423.complete
GAAGTTATCAGTCGACATGGAGAACCCGAACTGTGACCTCTACACCCTGG
AGGCCAACATGGCGAGTCAAGCGCTCCGGGAACTGACAGATGGCGAGGAC
AAGGATCCCATTACCAAGCTGCGATTGCTGTGCCTCAGCCGCGGAGCAAC
AGGCATACTGGGATTGGGCAGGGCCTTCCGGGCGATGGACGACGATGGTA
GCAAGGCTCTGAATGAGGAGGAGTTCATCACTGGCATTAGGGACACCGGA
TTGGATGTGTCGGAGGAGGAGATCAAGCAGATGTTCGCCACGTTTGATGA
GGATGGCAGTGGATCGATTAATATGACCGAGTTCCTGCTTAAACTAAGGC
CCCCCATGCCGCAGAGTCGTTTGAATATTATTGATCAGGCGTTCAACAAA
ATGGATCGTGATGAAGATGGAGTAATTACCATTCAAGATCTTAAGAACGT
GTACTCTGTAAAAGAACATCCCAAGTACCAGTCTGGAGAAAAGTCTGAGG
ATGAAATTCTTACCGACTTTTTGCACAACTTTGAGGGAGGTCGAGGAAAC
CTGGATGGAAAGATAACCCGCGAGGAGTTTGTCAACTATTATGCCACCAT
TAGTGCCTCAATTGACAACGATATGTTTTTTGATCTGATGATGCGACGTG
CCTACGTCATGGCAAGCTTTCTAGACCAT
BO06423.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10126-RA | 648 | CG10126-PA | 1..645 | 17..661 | 3225 | 100 | Plus |
CG10126-RB | 684 | CG10126-PB | 41..681 | 21..661 | 3205 | 100 | Plus |
CG31345-RA | 642 | CG31345-PA | 75..205 | 97..227 | 190 | 76.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10126-RA | 907 | CG10126-RA | 136..782 | 15..661 | 3235 | 100 | Plus |
CG10126-RB | 835 | CG10126-RB | 70..710 | 21..661 | 3205 | 100 | Plus |
CG31345-RA | 984 | CG31345-RA | 217..347 | 97..227 | 190 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12855825..12856038 | 562..349 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 12856456..12856607 | 172..21 | 760 | 100 | Minus |
3R | 32079331 | 3R | 12856241..12856367 | 293..167 | 635 | 100 | Minus |
3R | 32079331 | 3R | 12855669..12855769 | 661..561 | 505 | 100 | Minus |
3R | 32079331 | 3R | 12856130..12856187 | 349..292 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:54:57 has no hits.
BO06423.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:41 Download gff for
BO06423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 1..648 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:41 Download gff for
BO06423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 107..758 | 15..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:51 Download gff for
BO06423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 138..782 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:41 Download gff for
BO06423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 107..758 | 15..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:49 Download gff for
BO06423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10126-RA | 138..782 | 17..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:49 Download gff for
BO06423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12855667..12855767 | 563..663 | 98 | <- | Minus |
3R | 12855825..12856037 | 350..562 | 100 | <- | Minus |
3R | 12856130..12856187 | 292..349 | 100 | <- | Minus |
3R | 12856243..12856362 | 172..291 | 100 | <- | Minus |
3R | 12856457..12856608 | 17..171 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:51 Download gff for
BO06423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8681389..8681489 | 563..663 | 98 | <- | Minus |
arm_3R | 8681547..8681759 | 350..562 | 100 | <- | Minus |
arm_3R | 8681852..8681909 | 292..349 | 100 | <- | Minus |
arm_3R | 8681965..8682084 | 172..291 | 100 | <- | Minus |
arm_3R | 8682179..8682330 | 17..171 | 98 | | Minus |
BO06423.pep Sequence
Translation from 16 to 679
> BO06423.pep
MENPNCDLYTLEANMASQALRELTDGEDKDPITKLRLLCLSRGATGILGL
GRAFRAMDDDGSKALNEEEFITGIRDTGLDVSEEEIKQMFATFDEDGSGS
INMTEFLLKLRPPMPQSRLNIIDQAFNKMDRDEDGVITIQDLKNVYSVKE
HPKYQSGEKSEDEILTDFLHNFEGGRGNLDGKITREEFVNYYATISASID
NDMFFDLMMRRAYVMASFLDH
BO06423.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10126-PA | 215 | CG10126-PA | 1..215 | 1..215 | 1109 | 100 | Plus |
CG10126-PB | 227 | CG10126-PB | 13..227 | 1..215 | 1102 | 99.1 | Plus |
CG31345-PA | 213 | CG31345-PA | 7..211 | 9..213 | 713 | 66.3 | Plus |
CG11165-PA | 148 | CG11165-PA | 16..143 | 54..190 | 147 | 30.5 | Plus |
Cam-PD | 149 | CG8472-PD | 16..143 | 53..189 | 141 | 30 | Plus |