Clone BO06423 Report

Search the DGRC for BO06423

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG10126-RA
Protein status:BO06423.pep: validated full length
Sequenced Size:679

Clone Sequence Records

BO06423.3prime Sequence

677 bp (676 high quality bases) assembled on 2005-12-03

> BO06423.3prime
ATGGTCTAGAAAGCTTGCCATGACGTAGGCACGTCGCATCATCAGATCAA
AAAACATATCGTTGTCAATTGAGGCACTAATGGTGGCATAATAGTTGACA
AACTCCTCGCGGGTTATCTTTCCATCCAGGTTTCCTCGACCTCCCTCAAA
GTTGTGCAAAAAGTCGGTAAGAATTTCATCCTCAGACTTTTCTCCAGACT
GGTACTTGGGATGTTCTTTTACAGAGTACACGTTCTTAAGATCTTGAATG
GTAATTACTCCATCTTCATCACGATCCATTTTGTTGAACGCCTGATCAAT
AATATTCAAACGACTCTGCGGCATGGGGGGCCTTAGTTTAAGCAGGAACT
CGGTCATATTAATCGATCCACTGCCATCCTCATCAAACGTGGCGAACATC
TGCTTGATCTCCTCCTCCGACACATCCAATCCGGTGTCCCTAATGCCAGT
GATGAACTCCTCCTCATTCAGAGCCTTGCTACCATCGTCGTCCATCGCCC
GGAAGGCCCTGCCCAATCCCAGTATGCCTGTTGCTCCGCGGCTGAGGCAC
AGCAATCGCAGCTTGGTAATGGGATCCTTGTCCTCGCCATCTGTCAGTTC
CCGGAGCGCTTGACTCGCCATGTTGGCCTCCAGGGTGTAGAGGTCACAGT
TCGGGTTCTCCATGTCGACTGATAACT

BO06423.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10126-PA 648 CG10126-RA 1..645 663..19 3225 100 Minus
CG10126-PB 684 CG10126-RB 41..681 659..19 3205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10126-RA 907 CG10126-RA 136..782 665..19 3235 100 Minus
CG10126-RB 835 CG10126-RB 70..710 659..19 3205 100 Minus
CG31345-RA 984 CG31345-RA 217..347 583..453 190 76.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12855825..12856038 118..331 1070 100 Plus
3R 32079331 3R 12856456..12856607 508..659 760 100 Plus
3R 32079331 3R 12856241..12856367 387..513 635 100 Plus
3R 32079331 3R 12855669..12855769 19..119 505 100 Plus
3R 32079331 3R 12856130..12856187 331..388 290 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:10:10 has no hits.

BO06423.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:07 Download gff for BO06423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-PA 1..648 15..663 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:38 Download gff for BO06423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-PA 1..648 15..663 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:01 Download gff for BO06423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 136..787 12..665 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:12:00 Download gff for BO06423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 136..787 12..665 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:12:00 Download gff for BO06423.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12855664..12855767 12..117 97 <- Plus
3R 12855825..12856037 118..330 100 <- Plus
3R 12856130..12856187 331..388 100 <- Plus
3R 12856243..12856362 389..508 100 <- Plus
3R 12856457..12856607 509..659 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:01 Download gff for BO06423.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8682179..8682329 509..659 100   Plus
arm_3R 8681386..8681489 12..117 97 <- Plus
arm_3R 8681547..8681759 118..330 100 <- Plus
arm_3R 8681852..8681909 331..388 100 <- Plus
arm_3R 8681965..8682084 389..508 100 <- Plus

BO06423.5prime Sequence

677 bp (676 high quality bases) assembled on 2005-12-03

> BO06423.5prime
GAAGTTATCAGTCGACATGGAGAACCCGAACTGTGACCTCTACACCCTGG
AGGCCAACATGGCGAGTCAAGCGCTCCGGGAACTGACAGATGGCGAGGAC
AAGGATCCCATTACCAAGCTGCGATTGCTGTGCCTCAGCCGCGGAGCAAC
AGGCATACTGGGATTGGGCAGGGCCTTCCGGGCGATGGACGACGATGGTA
GCAAGGCTCTGAATGAGGAGGAGTTCATCACTGGCATTAGGGACACCGGA
TTGGATGTGTCGGAGGAGGAGATCAAGCAGATGTTCGCCACGTTTGATGA
GGATGGCAGTGGATCGATTAATATGACCGAGTTCCTGCTTAAACTAAGGC
CCCCCATGCCGCAGAGTCGTTTGAATATTATTGATCAGGCGTTCAACAAA
ATGGATCGTGATGAAGATGGAGTAATTACCATTCAAGATCTTAAGAACGT
GTACTCTGTAAAAGAACATCCCAAGTACCAGTCTGGAGAAAAGTCTGAGG
ATGAAATTCTTACCGACTTTTTGCACAACTTTGAGGGAGGTCGAGGAAAC
CTGGATGGAAAGATAACCCGCGAGGAGTTTGTCAACTATTATGCCACCAT
TAGTGCCTCAATTGACAACGATATGTTTTTTGATCTGATGATGCGACGTG
CCTACGTCATGGCAAGCTTTCTAGACC

BO06423.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10126-PA 648 CG10126-RA 1..645 17..661 3225 100 Plus
CG10126-PB 684 CG10126-RB 41..681 21..661 3205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10126-RA 907 CG10126-RA 136..782 15..661 3235 100 Plus
CG10126-RB 835 CG10126-RB 70..710 21..661 3205 100 Plus
CG31345-RA 984 CG31345-RA 217..347 97..227 190 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12855825..12856038 562..349 1070 100 Minus
3R 32079331 3R 12856456..12856607 172..21 760 100 Minus
3R 32079331 3R 12856241..12856367 293..167 635 100 Minus
3R 32079331 3R 12855669..12855769 661..561 505 100 Minus
3R 32079331 3R 12856130..12856187 349..292 290 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:04:00 has no hits.

BO06423.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:08 Download gff for BO06423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-PA 1..648 17..665 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:39 Download gff for BO06423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-PA 1..648 17..665 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:36 Download gff for BO06423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 136..787 15..668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:37 Download gff for BO06423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 136..787 15..668 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:37 Download gff for BO06423.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12855825..12856037 350..562 100 <- Minus
3R 12856130..12856187 292..349 100 <- Minus
3R 12856243..12856362 172..291 100 <- Minus
3R 12856457..12856607 21..171 100   Minus
3R 12855664..12855767 563..668 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:36 Download gff for BO06423.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8681386..8681489 563..668 97 <- Minus
arm_3R 8681547..8681759 350..562 100 <- Minus
arm_3R 8681852..8681909 292..349 100 <- Minus
arm_3R 8681965..8682084 172..291 100 <- Minus
arm_3R 8682179..8682329 21..171 100   Minus

BO06423.complete Sequence

679 bp (679 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630391

> BO06423.complete
GAAGTTATCAGTCGACATGGAGAACCCGAACTGTGACCTCTACACCCTGG
AGGCCAACATGGCGAGTCAAGCGCTCCGGGAACTGACAGATGGCGAGGAC
AAGGATCCCATTACCAAGCTGCGATTGCTGTGCCTCAGCCGCGGAGCAAC
AGGCATACTGGGATTGGGCAGGGCCTTCCGGGCGATGGACGACGATGGTA
GCAAGGCTCTGAATGAGGAGGAGTTCATCACTGGCATTAGGGACACCGGA
TTGGATGTGTCGGAGGAGGAGATCAAGCAGATGTTCGCCACGTTTGATGA
GGATGGCAGTGGATCGATTAATATGACCGAGTTCCTGCTTAAACTAAGGC
CCCCCATGCCGCAGAGTCGTTTGAATATTATTGATCAGGCGTTCAACAAA
ATGGATCGTGATGAAGATGGAGTAATTACCATTCAAGATCTTAAGAACGT
GTACTCTGTAAAAGAACATCCCAAGTACCAGTCTGGAGAAAAGTCTGAGG
ATGAAATTCTTACCGACTTTTTGCACAACTTTGAGGGAGGTCGAGGAAAC
CTGGATGGAAAGATAACCCGCGAGGAGTTTGTCAACTATTATGCCACCAT
TAGTGCCTCAATTGACAACGATATGTTTTTTGATCTGATGATGCGACGTG
CCTACGTCATGGCAAGCTTTCTAGACCAT

BO06423.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10126-RA 648 CG10126-PA 1..645 17..661 3225 100 Plus
CG10126-RB 684 CG10126-PB 41..681 21..661 3205 100 Plus
CG31345-RA 642 CG31345-PA 75..205 97..227 190 76.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10126-RA 907 CG10126-RA 136..782 15..661 3235 100 Plus
CG10126-RB 835 CG10126-RB 70..710 21..661 3205 100 Plus
CG31345-RA 984 CG31345-RA 217..347 97..227 190 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12855825..12856038 562..349 1070 100 Minus
3R 32079331 3R 12856456..12856607 172..21 760 100 Minus
3R 32079331 3R 12856241..12856367 293..167 635 100 Minus
3R 32079331 3R 12855669..12855769 661..561 505 100 Minus
3R 32079331 3R 12856130..12856187 349..292 290 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:54:57 has no hits.

BO06423.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:41 Download gff for BO06423.complete
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 1..648 17..665 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:41 Download gff for BO06423.complete
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 107..758 15..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:51 Download gff for BO06423.complete
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 138..782 17..663 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:41 Download gff for BO06423.complete
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 107..758 15..668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:49 Download gff for BO06423.complete
Subject Subject Range Query Range Percent Splice Strand
CG10126-RA 138..782 17..663 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:49 Download gff for BO06423.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12855667..12855767 563..663 98 <- Minus
3R 12855825..12856037 350..562 100 <- Minus
3R 12856130..12856187 292..349 100 <- Minus
3R 12856243..12856362 172..291 100 <- Minus
3R 12856457..12856608 17..171 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:51 Download gff for BO06423.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8681389..8681489 563..663 98 <- Minus
arm_3R 8681547..8681759 350..562 100 <- Minus
arm_3R 8681852..8681909 292..349 100 <- Minus
arm_3R 8681965..8682084 172..291 100 <- Minus
arm_3R 8682179..8682330 17..171 98   Minus

BO06423.pep Sequence

Translation from 16 to 679

> BO06423.pep
MENPNCDLYTLEANMASQALRELTDGEDKDPITKLRLLCLSRGATGILGL
GRAFRAMDDDGSKALNEEEFITGIRDTGLDVSEEEIKQMFATFDEDGSGS
INMTEFLLKLRPPMPQSRLNIIDQAFNKMDRDEDGVITIQDLKNVYSVKE
HPKYQSGEKSEDEILTDFLHNFEGGRGNLDGKITREEFVNYYATISASID
NDMFFDLMMRRAYVMASFLDH

BO06423.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10126-PA 215 CG10126-PA 1..215 1..215 1109 100 Plus
CG10126-PB 227 CG10126-PB 13..227 1..215 1102 99.1 Plus
CG31345-PA 213 CG31345-PA 7..211 9..213 713 66.3 Plus
CG11165-PA 148 CG11165-PA 16..143 54..190 147 30.5 Plus
Cam-PD 149 CG8472-PD 16..143 53..189 141 30 Plus