Clone Sequence Records
BO06424.5prime Sequence
506 bp (505 high quality bases) assembled on 2005-12-03
> BO06424.5prime
GAAGTTATCAGTCGACATGCACTACCATACGAATCTCATTGCAGCCCTGC
TGCTGGCAGCTCTAATTCACGAGGGCTCTGCAATTTGGTGCTACCGCTGC
ACTTCGGCCACGCCCGGCTGTGCGGAGAAGTTTAACTGGCGGGGAATAGG
ATTCCTGGGCGAGCACTGCCCGGAACCGGACGACATTTGCGTCAAGGTGA
CGGAGCGACGCGGCGCCAGGGAAACAATCACACGTGACTGCCTAAGCGCG
CTGAGCTTCCGCAAAGACATTCCCGCCGACAAATACGAAGGATGTCGTCC
TGCCGCCCACGATGAAAAGCTAGCGAACTACGTAAACCACACGATCAAGG
AGCACGACGTGCGCCGTGACTACTACACGGACACCACGTTCTGTTTCTGC
TTCCTCGACCATCGATGCAATGGGGCCAGCGGCCTACAAACGTCCGCCGT
AATCGGTCTTCTCACTCTAATTCCTGCCCTGCTTCTACGCGCAAGCTTTC
TAGACC
BO06424.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6038-PA | 477 | CG6038-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crim-RA | 752 | CG6038-RA | 107..582 | 15..490 | 2380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11710677..11710952 | 490..215 | 1380 | 100 | Minus |
3L | 28110227 | 3L | 11711008..11711149 | 215..74 | 710 | 100 | Minus |
3L | 28110227 | 3L | 11711220..11711280 | 75..15 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:45:54 has no hits.
BO06424.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:10 Download gff for
BO06424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6038-PA | 1..477 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:42 Download gff for
BO06424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6038-PA | 1..477 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:07 Download gff for
BO06424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crim-RA | 103..582 | 9..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:32 Download gff for
BO06424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crim-RA | 103..582 | 9..490 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:32 Download gff for
BO06424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11710677..11710951 | 216..490 | 100 | <- | Minus |
3L | 11711008..11711148 | 75..215 | 100 | <- | Minus |
3L | 11711221..11711284 | 9..74 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:07 Download gff for
BO06424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11703777..11704051 | 216..490 | 100 | <- | Minus |
arm_3L | 11704108..11704248 | 75..215 | 100 | <- | Minus |
arm_3L | 11704321..11704384 | 9..74 | 93 | | Minus |
BO06424.3prime Sequence
506 bp (505 high quality bases) assembled on 2005-12-03
> BO06424.3prime
ATGGTCTAGAAAGCTTGCGCGTAGAAGCAGGGCAGGAATTAGAGTGAGAA
GACCGATTACGGCGGACGTTTGTAGGCCGCTGGCCCCATTGCATCGATGG
TCGAGGAAGCAGAAACAGAACGTGGTGTCCGTGTAGTAGTCACGGCGCAC
GTCGTGCTCCTTGATCGTGTGGTTTACGTAGTTCGCTAGCTTTTCATCGT
GGGCGGCAGGACGACATCCTTCGTATTTGTCGGCGGGAATGTCTTTGCGG
AAGCTCAGCGCGCTTAGGCAGTCACGTGTGATTGTTTCCCTGGCGCCGCG
TCGCTCCGTCACCTTGACGCAAATGTCGTCCGGTTCCGGGCAGTGCTCGC
CCAGGAATCCTATTCCCCGCCAGTTAAACTTCTCCGCACAGCCGGGCGTG
GCCGAAGTGCAGCGGTAGCACCAAATTGCAGAGCCCTCGTGAATTAGAGC
TGCCAGCAGCAGGGCTGCAATGAGATTCGTATGGTAGTGCATGTCGACTG
ATAACT
BO06424.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6038-PA | 477 | CG6038-RA | 1..474 | 492..19 | 2370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crim-RA | 752 | CG6038-RA | 107..582 | 494..19 | 2380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11710677..11710952 | 19..294 | 1380 | 100 | Plus |
3L | 28110227 | 3L | 11711008..11711149 | 294..435 | 710 | 100 | Plus |
3L | 28110227 | 3L | 11711220..11711280 | 434..494 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:34:46 has no hits.
BO06424.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:09 Download gff for
BO06424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6038-PA | 1..477 | 18..492 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:41 Download gff for
BO06424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6038-PA | 1..477 | 18..492 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:55 Download gff for
BO06424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crim-RA | 103..582 | 19..500 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:33 Download gff for
BO06424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crim-RA | 103..582 | 19..500 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:33 Download gff for
BO06424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11710677..11710951 | 19..293 | 100 | <- | Plus |
3L | 11711008..11711148 | 294..434 | 100 | <- | Plus |
3L | 11711221..11711284 | 435..500 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:55 Download gff for
BO06424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11703777..11704051 | 19..293 | 100 | <- | Plus |
arm_3L | 11704108..11704248 | 294..434 | 100 | <- | Plus |
arm_3L | 11704321..11704384 | 435..500 | 93 | | Plus |
BO06424.complete Sequence
508 bp (508 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630392
> BO06424.complete
GAAGTTATCAGTCGACATGCACTACCATACGAATCTCATTGCAGCCCTGC
TGCTGGCAGCTCTAATTCACGAGGGCTCTGCAATTTGGTGCTACCGCTGC
ACTTCGGCCACGCCCGGCTGTGCGGAGAAGTTTAACTGGCGGGGAATAGG
ATTCCTGGGCGAGCACTGCCCGGAACCGGACGACATTTGCGTCAAGGTGA
CGGAGCGACGCGGCGCCAGGGAAACAATCACACGTGACTGCCTAAGCGCG
CTGAGCTTCCGCAAAGACATTCCCGCCGACAAATACGAAGGATGTCGTCC
TGCCGCCCACGATGAAAAGCTAGCGAACTACGTAAACCACACGATCAAGG
AGCACGACGTGCGCCGTGACTACTACACGGACACCACGTTCTGTTTCTGC
TTCCTCGACCATCGATGCAATGGGGCCAGCGGCCTACAAACGTCCGCCGT
AATCGGTCTTCTCACTCTAATTCCTGCCCTGCTTCTACGCGCAAGCTTTC
TAGACCAT
BO06424.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crim-RA | 477 | CG6038-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crim-RA | 752 | CG6038-RA | 107..582 | 15..490 | 2380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11710677..11710952 | 490..215 | 1380 | 100 | Minus |
3L | 28110227 | 3L | 11711008..11711149 | 215..74 | 710 | 100 | Minus |
3L | 28110227 | 3L | 11711220..11711280 | 75..15 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:09:08 has no hits.
BO06424.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:08 Download gff for
BO06424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6038-RA | 1..477 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:49 Download gff for
BO06424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6038-RA | 89..568 | 9..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:53 Download gff for
BO06424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crim-RA | 109..582 | 17..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:08 Download gff for
BO06424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6038-RA | 89..568 | 9..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:01 Download gff for
BO06424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crim-RA | 109..582 | 17..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:01 Download gff for
BO06424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11710675..11710951 | 216..492 | 99 | <- | Minus |
3L | 11711008..11711148 | 75..215 | 100 | <- | Minus |
3L | 11711221..11711278 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:53 Download gff for
BO06424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11703775..11704051 | 216..492 | 99 | <- | Minus |
arm_3L | 11704108..11704248 | 75..215 | 100 | <- | Minus |
arm_3L | 11704321..11704378 | 17..74 | 100 | | Minus |
BO06424.pep Sequence
Translation from 16 to 508
> BO06424.pep
MHYHTNLIAALLLAALIHEGSAIWCYRCTSATPGCAEKFNWRGIGFLGEH
CPEPDDICVKVTERRGARETITRDCLSALSFRKDIPADKYEGCRPAAHDE
KLANYVNHTIKEHDVRRDYYTDTTFCFCFLDHRCNGASGLQTSAVIGLLT
LIPALLLRASFLDH
BO06424.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crim-PA | 158 | CG6038-PA | 1..158 | 1..158 | 867 | 100 | Plus |