Clone BO06424 Report

Search the DGRC for BO06424

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:24
Vector:pDNR-Dual
Associated Gene/Transcriptcrim-RA
Protein status:BO06424.pep: validated full length
Sequenced Size:508

Clone Sequence Records

BO06424.5prime Sequence

506 bp (505 high quality bases) assembled on 2005-12-03

> BO06424.5prime
GAAGTTATCAGTCGACATGCACTACCATACGAATCTCATTGCAGCCCTGC
TGCTGGCAGCTCTAATTCACGAGGGCTCTGCAATTTGGTGCTACCGCTGC
ACTTCGGCCACGCCCGGCTGTGCGGAGAAGTTTAACTGGCGGGGAATAGG
ATTCCTGGGCGAGCACTGCCCGGAACCGGACGACATTTGCGTCAAGGTGA
CGGAGCGACGCGGCGCCAGGGAAACAATCACACGTGACTGCCTAAGCGCG
CTGAGCTTCCGCAAAGACATTCCCGCCGACAAATACGAAGGATGTCGTCC
TGCCGCCCACGATGAAAAGCTAGCGAACTACGTAAACCACACGATCAAGG
AGCACGACGTGCGCCGTGACTACTACACGGACACCACGTTCTGTTTCTGC
TTCCTCGACCATCGATGCAATGGGGCCAGCGGCCTACAAACGTCCGCCGT
AATCGGTCTTCTCACTCTAATTCCTGCCCTGCTTCTACGCGCAAGCTTTC
TAGACC

BO06424.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6038-PA 477 CG6038-RA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
crim-RA 752 CG6038-RA 107..582 15..490 2380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11710677..11710952 490..215 1380 100 Minus
3L 28110227 3L 11711008..11711149 215..74 710 100 Minus
3L 28110227 3L 11711220..11711280 75..15 305 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:45:54 has no hits.

BO06424.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:10 Download gff for BO06424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6038-PA 1..477 17..491 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:42 Download gff for BO06424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6038-PA 1..477 17..491 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:07 Download gff for BO06424.5prime
Subject Subject Range Query Range Percent Splice Strand
crim-RA 103..582 9..490 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:32 Download gff for BO06424.5prime
Subject Subject Range Query Range Percent Splice Strand
crim-RA 103..582 9..490 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:32 Download gff for BO06424.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11710677..11710951 216..490 100 <- Minus
3L 11711008..11711148 75..215 100 <- Minus
3L 11711221..11711284 9..74 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:07 Download gff for BO06424.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11703777..11704051 216..490 100 <- Minus
arm_3L 11704108..11704248 75..215 100 <- Minus
arm_3L 11704321..11704384 9..74 93   Minus

BO06424.3prime Sequence

506 bp (505 high quality bases) assembled on 2005-12-03

> BO06424.3prime
ATGGTCTAGAAAGCTTGCGCGTAGAAGCAGGGCAGGAATTAGAGTGAGAA
GACCGATTACGGCGGACGTTTGTAGGCCGCTGGCCCCATTGCATCGATGG
TCGAGGAAGCAGAAACAGAACGTGGTGTCCGTGTAGTAGTCACGGCGCAC
GTCGTGCTCCTTGATCGTGTGGTTTACGTAGTTCGCTAGCTTTTCATCGT
GGGCGGCAGGACGACATCCTTCGTATTTGTCGGCGGGAATGTCTTTGCGG
AAGCTCAGCGCGCTTAGGCAGTCACGTGTGATTGTTTCCCTGGCGCCGCG
TCGCTCCGTCACCTTGACGCAAATGTCGTCCGGTTCCGGGCAGTGCTCGC
CCAGGAATCCTATTCCCCGCCAGTTAAACTTCTCCGCACAGCCGGGCGTG
GCCGAAGTGCAGCGGTAGCACCAAATTGCAGAGCCCTCGTGAATTAGAGC
TGCCAGCAGCAGGGCTGCAATGAGATTCGTATGGTAGTGCATGTCGACTG
ATAACT

BO06424.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6038-PA 477 CG6038-RA 1..474 492..19 2370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
crim-RA 752 CG6038-RA 107..582 494..19 2380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11710677..11710952 19..294 1380 100 Plus
3L 28110227 3L 11711008..11711149 294..435 710 100 Plus
3L 28110227 3L 11711220..11711280 434..494 305 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:34:46 has no hits.

BO06424.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:09 Download gff for BO06424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6038-PA 1..477 18..492 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:41 Download gff for BO06424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6038-PA 1..477 18..492 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:55 Download gff for BO06424.3prime
Subject Subject Range Query Range Percent Splice Strand
crim-RA 103..582 19..500 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:33 Download gff for BO06424.3prime
Subject Subject Range Query Range Percent Splice Strand
crim-RA 103..582 19..500 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:33 Download gff for BO06424.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11710677..11710951 19..293 100 <- Plus
3L 11711008..11711148 294..434 100 <- Plus
3L 11711221..11711284 435..500 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:55 Download gff for BO06424.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11703777..11704051 19..293 100 <- Plus
arm_3L 11704108..11704248 294..434 100 <- Plus
arm_3L 11704321..11704384 435..500 93   Plus

BO06424.complete Sequence

508 bp (508 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630392

> BO06424.complete
GAAGTTATCAGTCGACATGCACTACCATACGAATCTCATTGCAGCCCTGC
TGCTGGCAGCTCTAATTCACGAGGGCTCTGCAATTTGGTGCTACCGCTGC
ACTTCGGCCACGCCCGGCTGTGCGGAGAAGTTTAACTGGCGGGGAATAGG
ATTCCTGGGCGAGCACTGCCCGGAACCGGACGACATTTGCGTCAAGGTGA
CGGAGCGACGCGGCGCCAGGGAAACAATCACACGTGACTGCCTAAGCGCG
CTGAGCTTCCGCAAAGACATTCCCGCCGACAAATACGAAGGATGTCGTCC
TGCCGCCCACGATGAAAAGCTAGCGAACTACGTAAACCACACGATCAAGG
AGCACGACGTGCGCCGTGACTACTACACGGACACCACGTTCTGTTTCTGC
TTCCTCGACCATCGATGCAATGGGGCCAGCGGCCTACAAACGTCCGCCGT
AATCGGTCTTCTCACTCTAATTCCTGCCCTGCTTCTACGCGCAAGCTTTC
TAGACCAT

BO06424.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
crim-RA 477 CG6038-PA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
crim-RA 752 CG6038-RA 107..582 15..490 2380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11710677..11710952 490..215 1380 100 Minus
3L 28110227 3L 11711008..11711149 215..74 710 100 Minus
3L 28110227 3L 11711220..11711280 75..15 305 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:09:08 has no hits.

BO06424.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:08 Download gff for BO06424.complete
Subject Subject Range Query Range Percent Splice Strand
CG6038-RA 1..477 17..491 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:49 Download gff for BO06424.complete
Subject Subject Range Query Range Percent Splice Strand
CG6038-RA 89..568 9..490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:53 Download gff for BO06424.complete
Subject Subject Range Query Range Percent Splice Strand
crim-RA 109..582 17..492 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:08 Download gff for BO06424.complete
Subject Subject Range Query Range Percent Splice Strand
CG6038-RA 89..568 9..490 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:01 Download gff for BO06424.complete
Subject Subject Range Query Range Percent Splice Strand
crim-RA 109..582 17..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:01 Download gff for BO06424.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11710675..11710951 216..492 99 <- Minus
3L 11711008..11711148 75..215 100 <- Minus
3L 11711221..11711278 17..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:53 Download gff for BO06424.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11703775..11704051 216..492 99 <- Minus
arm_3L 11704108..11704248 75..215 100 <- Minus
arm_3L 11704321..11704378 17..74 100   Minus

BO06424.pep Sequence

Translation from 16 to 508

> BO06424.pep
MHYHTNLIAALLLAALIHEGSAIWCYRCTSATPGCAEKFNWRGIGFLGEH
CPEPDDICVKVTERRGARETITRDCLSALSFRKDIPADKYEGCRPAAHDE
KLANYVNHTIKEHDVRRDYYTDTTFCFCFLDHRCNGASGLQTSAVIGLLT
LIPALLLRASFLDH

BO06424.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
crim-PA 158 CG6038-PA 1..158 1..158 867 100 Plus