Clone Sequence Records
BO06427.3prime Sequence
791 bp (734 high quality bases) assembled on 2005-12-03
> BO06427.3prime
ATGGTCTAGAAAGCTTGCCTTGGCCTTCAGTTCGAGTTTCTTGCGCTGCA
GTTGAATCTTCTGATAGGCCACATCCTTCTGATCTGTGGACCAGGCCAGG
TACATGTAGGTGGTCAGCAGCAAGGCCATGACTAGCCGATCCACGCTCAT
CACATTCGTGGCGAACAGGATGACCGACAGGCCCACAAACGAGGGATGTC
TGACATGGGCGTACAGATTGCGCAATTCCCCGGATTTGTAGCTGATGGGC
GGTCCGTAGGCCTTCAGATCGTAGTAGGCTTGCTTGACGCCCAGCAGCTC
TGGCAGATCCATCACCAAACTGCCGCCAAAGATGACAACCCAGCAGATGC
CATGGGTGATCACGAAGGTCCACCAAAGCGGAGCACTCTGCTCCACATCG
ATTTGCCACAGAACAATCGACTGAGCGGGCAGCCAGTTGACGATCAAATA
ATGTAAACAAAGCGATGACGTCAGGCTATAAATAGTGCGCTCCGCACCCG
ACAATCCCAACTTGGCCAACAGCTTCTTGACCACGGCTGACTTGAGGAAG
CTGTGCTGGAAGATGAATCCGATCAGGTAGAGGGTATCGAACACCACGGG
TCCATAGGCGGTCTGCAGGCGCGACTTGTTGTCCAGTAAATTGAAAATCC
AGGTGTGCGCCTTGGAAATCGAACGAGGCGTCGAAAGGAACATCATCAGG
CTGCCAACCACGTACAGGGAGTAAGCGAACGTGGCCAGGGATGCCAATAG
TACTATGGACTTGGCAATCGATGTCATGTCGACTGATAACT
BO06427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7655-PA | 762 | CG7655-RA | 1..759 | 777..19 | 3795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7655-RA | 1046 | CG7655-RA | 121..879 | 777..19 | 3795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17683175..17683606 | 450..19 | 2160 | 100 | Minus |
| 3R | 32079331 | 3R | 17682789..17683115 | 777..451 | 1635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:08:55 has no hits.
BO06427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:13 Download gff for
BO06427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7655-PA | 1..762 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:46 Download gff for
BO06427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7655-PA | 1..762 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:09 Download gff for
BO06427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7655-RA | 121..886 | 11..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:49 Download gff for
BO06427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7655-RA | 121..886 | 11..777 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:49 Download gff for
BO06427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17683175..17683613 | 11..450 | 99 | | Minus |
| 3R | 17682789..17683115 | 451..777 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:09 Download gff for
BO06427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13508511..13508837 | 451..777 | 100 | -> | Minus |
| arm_3R | 13508897..13509335 | 11..450 | 99 | | Minus |
BO06427.5prime Sequence
791 bp (733 high quality bases) assembled on 2005-12-03
> BO06427.5prime
GAAGTTATCAGTCGACATGACATCGATTGCCAAGTCCATAGTACTATTGG
CATCCCTGGCCACGTTCGCTTACTCCCTGTACGTGGTTGGCAGCCTGATG
ATGTTCCTTTCGACGCCTCGTTCGATTTCCAAGGCGCACACCTGGATTTT
CAATTTACTGGACAACAAGTCGCGCCTGCAGACCGCCTATGGACCCGTGG
TGTTCGATACCCTCTACCTGATCGGATTCATCTTCCAGCACAGCTTCCTC
AAGTCAGCCGTGGTCAAGAAGCTGTTGGCCAAGTTGGGATTGTCGGGTGC
GGAGCGCACTATTTATAGCCTGACGTCATCGCTTTGTTTACATTATTTGA
TCGTCAACTGGCTGCCCGCTCAGTCGATTGTTCTGTGGCAAATCGATGTG
GAGCAGAGTGCTCCGCTTTGGTGGACCTTCGTGATCACCCATGGCATCTG
CTGGGTTGTCATCTTTGGCGGCAGTTTGGTGATGGATCTGCCAGAGCTGC
TGGGCGTCAAGCAAGCCTACTACGATCTGAAGGCCTACGGACCGCCCATC
AGCTACAAATCCGGGGAATTGCGCAATCTGTACGCCCATGTCAGACATCC
CTCGTTTGTGGGCCTGTCGGTCATCCTGTTCGCCACGAATGTGATGAGCG
TGGATCGGCTAGTCATGGCCTTGCTGCTGACCACCTACATGTACCTGGCC
TGGTCCACAGATCAGAAGGATGTGGCCTATCAGAAGATTCAACTGCAGCG
CAAGAAACTCGAACTGAAGGCCAAGGCAAGCTTTCTAGACC
BO06427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7655-PA | 762 | CG7655-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7655-RA | 1046 | CG7655-RA | 121..879 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17683175..17683606 | 344..775 | 2160 | 100 | Plus |
| 3R | 32079331 | 3R | 17682789..17683115 | 17..343 | 1635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:46:14 has no hits.
BO06427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:14 Download gff for
BO06427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7655-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:47 Download gff for
BO06427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7655-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:09 Download gff for
BO06427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7655-RA | 121..886 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:36 Download gff for
BO06427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7655-RA | 121..886 | 17..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:36 Download gff for
BO06427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17683175..17683613 | 344..783 | 99 | | Plus |
| 3R | 17682789..17683115 | 17..343 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:09 Download gff for
BO06427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13508511..13508837 | 17..343 | 100 | -> | Plus |
| arm_3R | 13508897..13509335 | 344..783 | 99 | | Plus |
BO06427.complete Sequence
793 bp (793 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630394
> BO06427.complete
GAAGTTATCAGTCGACATGACATCGATTGCCAAGTCCATAGTACTATTGG
CATCCCTGGCCACGTTCGCTTACTCCCTGTACGTGGTTGGCAGCCTGATG
ATGTTCCTTTCGACGCCTCGTTCGATTTCCAAGGCGCACACCTGGATTTT
CAATTTACTGGACAACAAGTCGCGCCTGCAGACCGCCTATGGACCCGTGG
TGTTCGATACCCTCTACCTGATCGGATTCATCTTCCAGCACAGCTTCCTC
AAGTCAGCCGTGGTCAAGAAGCTGTTGGCCAAGTTGGGATTGTCGGGTGC
GGAGCGCACTATTTATAGCCTGACGTCATCGCTTTGTTTACATTATTTGA
TCGTCAACTGGCTGCCCGCTCAGTCGATTGTTCTGTGGCAAATCGATGTG
GAGCAGAGTGCTCCGCTTTGGTGGACCTTCGTGATCACCCATGGCATCTG
CTGGGTTGTCATCTTTGGCGGCAGTTTGGTGATGGATCTGCCAGAGCTGC
TGGGCGTCAAGCAAGCCTACTACGATCTGAAGGCCTACGGACCGCCCATC
AGCTACAAATCCGGGGAATTGCGCAATCTGTACGCCCATGTCAGACATCC
CTCGTTTGTGGGCCTGTCGGTCATCCTGTTCGCCACGAATGTGATGAGCG
TGGATCGGCTAGTCATGGCCTTGCTGCTGACCACCTACATGTACCTGGCC
TGGTCCACAGATCAGAAGGATGTGGCCTATCAGAAGATTCAACTGCAGCG
CAAGAAACTCGAACTGAAGGCCAAGGCAAGCTTTCTAGACCAT
BO06427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7655-RA | 762 | CG7655-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7655-RA | 1046 | CG7655-RA | 121..879 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17683175..17683606 | 344..775 | 2160 | 100 | Plus |
| 3R | 32079331 | 3R | 17682789..17683115 | 17..343 | 1635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:20:10 has no hits.
BO06427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:42 Download gff for
BO06427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7655-RA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:42 Download gff for
BO06427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7655-RA | 119..884 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:02 Download gff for
BO06427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7655-RA | 121..879 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:43 Download gff for
BO06427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7655-RA | 119..884 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:11 Download gff for
BO06427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7655-RA | 121..879 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:11 Download gff for
BO06427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17683175..17683606 | 344..777 | 99 | | Plus |
| 3R | 17682789..17683115 | 17..343 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:02 Download gff for
BO06427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13508511..13508837 | 17..343 | 100 | -> | Plus |
| arm_3R | 13508897..13509328 | 344..777 | 99 | | Plus |
BO06427.pep Sequence
Translation from 16 to 793
> BO06427.pep
MTSIAKSIVLLASLATFAYSLYVVGSLMMFLSTPRSISKAHTWIFNLLDN
KSRLQTAYGPVVFDTLYLIGFIFQHSFLKSAVVKKLLAKLGLSGAERTIY
SLTSSLCLHYLIVNWLPAQSIVLWQIDVEQSAPLWWTFVITHGICWVVIF
GGSLVMDLPELLGVKQAYYDLKAYGPPISYKSGELRNLYAHVRHPSFVGL
SVILFATNVMSVDRLVMALLLTTYMYLAWSTDQKDVAYQKIQLQRKKLEL
KAKASFLDH
BO06427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7655-PA | 253 | CG7655-PA | 1..253 | 1..253 | 1292 | 100 | Plus |
