Clone Sequence Records
BO06429.3prime Sequence
872 bp (846 high quality bases) assembled on 2005-12-03
> BO06429.3prime
ATGGTCTAGAAAGCTTGCCGACTTGTTTTTAGCTTGCAGTGCAGCGTAGA
TCAACCACTCGCGGCCGCCAGGTTTCTGACATCGCTCCAAAAGCTTCTCC
AGCTGGTGTGCCTGCTCCGCTAGCTGTTCCTCCTCCAGAATACCGGAAAT
CTCATGCAACAGCGCATGGCGTATTAACTGGGGCTCATCCTCGACAATGT
AACGCTTAACGCAAGCAACCAGTTCTTCGAGATGCTCGTCTACAGCTCCC
GGAAAGAGCTGATCCATGGCGGCGGCCAGGTTGAATAGGTATTCGCGATT
GGGGCCACTGGGACCGGCCGAGCTGAAGATTTGCCTCGCAATACAGGGAA
CTTGCCACACATCACCAGCATAGGAATCGTTCGCCTGCGTGGCCACGTAC
ATGATCACTTGGATGGGTTCTGCACCGTCAGTCGGATACTCGTGGAACTC
CAAGCTGCAGCGCTCATACCCGTTCTTCTCCCGGTAATCCAGATGGTCCA
ACACAGCACCCTTTTGACTAGCAGCTATGCGATAGGCGACGCCATAGACA
CGATCCTGGGCGGGATCGCCTGGCAGCAGGGTGACCACGCGACCAGGACG
TTCGGGAATACCCCGGTGATCGATGCTGTGCTGGTAGAAGCGACGCTTGA
ATCCCCAAACGAAGCCGCGTCGTCGGTCTATGTACGGGAAGTCCGTCTTC
CATACCAACGACCCATAGCCAAAGATCCAGACATCCGCATCCGTGGCCGC
CGGCGGCTCCAATTGATTGCTATTTTCGGTATCGAAAGTGCGTAGCATGG
AGAATCCTTGTGTAAAATCCTGATCCGCTGACTTGCATCCATGTTCCCTG
GGCTCCTCGATAACGTTCGCGA
BO06429.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2540-PA | 936 | CG2540-RA | 80..933 | 872..19 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2540-RA | 1234 | CG2540-RA | 161..1014 | 872..19 | 4270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12630038..12630891 | 872..19 | 4270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:43:13 has no hits.
BO06429.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:17 Download gff for
BO06429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2540-PA | 81..936 | 16..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:51 Download gff for
BO06429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2540-PA | 81..936 | 16..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:15 Download gff for
BO06429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2540-RA | 162..1014 | 19..871 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:19 Download gff for
BO06429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2540-RA | 162..1014 | 19..871 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:19 Download gff for
BO06429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12630039..12630891 | 19..871 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:15 Download gff for
BO06429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12524072..12524924 | 19..871 | 100 | | Minus |
BO06429.5prime Sequence
960 bp (820 high quality bases) assembled on 2005-12-03
> BO06429.5prime
GAAGTTATCAGTCGACATGTTGGACTTCCTGACGGAGCTGCGAAGCAGTG
GTTCTAGGGCGGATCAGCTGCCCGGCAACATATACACCGAGTTCTTCGCG
AACGTTATCGAGGAGCCCAGGGAACATGGATGCAAGTCAGCGGATCAGGA
TTTTACACAAGGATTCTCCATGCTACGCACTTTCGATACCGAAAATAGCA
ATCAATTGGAGCCGCCGGCGGCCACGGATGCGGATGTCTGGATCTTTGGC
TATGGGTCGTTGGTATGGAAGACGGACTTCCCGTACATAGACCGACGACG
CGGCTTCGTTTGGGGATTCAAGCGTCGCTTCTACCAGCACAGCATCGATC
ACCGGGGTATTCCCGAACGTCCTGGTCGCGTGGTCACCCTGCTGCCAGGC
GATCCCGCCCAGGATCGTGTCTATGGCGTCGCCTATCGCATAGCTGCTAG
TCAAAAGGGTGCTGTGTTGGACCATCTGGATTACCGGGAGAAGAACGGGT
ATGAGCGCTGCAGCTTGGAGTTCCACGAGTATCCGACTGACGGTGCAGAA
CCCATCCAAGTGATCATGTACGTGGCCACGCAGGCGAACGATTCCTATGC
TGGTGATGTGTGGCAAGTTCCCTGTATTGCGAGGCAAATCTTCAGCTCGG
CCGGTCCCAGTGGCCCCAATCGCGAATACCTATTCAACCTGGCCGCCGCC
ATGGATCAGCTCTTTCCGGGAGCTGTAGACGAGCATCTCGAAGAACTGGT
TGCTTGCGTTAAGCGTTACATTGTCGAGGATGAGCCCCAGTTAATACGCC
ATGCGCTGTTGCATGAGATTTCCGGTATTCTGGAGGAGGAACAGCTAGCG
GAGCAGGCACACCAGCTGGAGAAGCTTTTGGAGCGATGTCAGAAACCTGG
CGGCCGCGAGTGGTTGATCTACGCTGCACTGGCAAGCTAAAAACAGTCGG
GCAGCTTTCT
BO06429.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2540-PA | 936 | CG2540-RA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2540-RA | 1234 | CG2540-RA | 82..1009 | 17..945 | 4620 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12629959..12630886 | 17..945 | 4595 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:00:06 has no hits.
BO06429.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:18 Download gff for
BO06429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2540-PA | 1..936 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:53 Download gff for
BO06429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2540-PA | 1..936 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:42 Download gff for
BO06429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2540-RA | 79..1014 | 11..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:33:33 Download gff for
BO06429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2540-RA | 79..1014 | 11..949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:33:33 Download gff for
BO06429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12629956..12630891 | 11..949 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:42 Download gff for
BO06429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12523989..12524924 | 11..949 | 99 | | Plus |
BO06429.complete Sequence
967 bp (967 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630396
> BO06429.complete
GAAGTTATCAGTCGACATGTTGGACTTCCTGACGGAGCTGCGAAGCAGTG
GTTCTAGGGCGGATCAGCTGCCCGGCAACATATACACCGAGTTCTTCGCG
AACGTTATCGAGGAGCCCAGGGAACATGGATGCAAGTCAGCGGATCAGGA
TTTTACACAAGGATTCTCCATGCTACGCACTTTCGATACCGAAAATAGCA
ATCAATTGGAGCCGCCGGCGGCCACGGATGCGGATGTCTGGATCTTTGGC
TATGGGTCGTTGGTATGGAAGACGGACTTCCCGTACATAGACCGACGACG
CGGCTTCGTTTGGGGATTCAAGCGTCGCTTCTACCAGCACAGCATCGATC
ACCGGGGTATTCCCGAACGTCCTGGTCGCGTGGTCACCCTGCTGCCAGGC
GATCCCGCCCAGGATCGTGTCTATGGCGTCGCCTATCGCATAGCTGCTAG
TCAAAAGGGTGCTGTGTTGGACCATCTGGATTACCGGGAGAAGAACGGGT
ATGAGCGCTGCAGCTTGGAGTTCCACGAGTATCCGACTGACGGTGCAGAA
CCCATCCAAGTGATCATGTACGTGGCCACGCAGGCGAACGATTCCTATGC
TGGTGATGTGTGGCAAGTTCCCTGTATTGCGAGGCAAATCTTCAGCTCGG
CCGGTCCCAGTGGCCCCAATCGCGAATACCTATTCAACCTGGCCGCCGCC
ATGGATCAGCTCTTTCCGGGAGCTGTAGACGAGCATCTCGAAGAACTGGT
TGCTTGCGTTAAGCGTTACATTGTCGAGGATGAGCCCCAGTTAATACGCC
ATGCGCTGTTGCATGAGATTTCCGGTATTCTGGAGGAGGAACAGCTAGCG
GAGCAGGCACACCAGCTGGAGAAGCTTTTGGAGCGATGTCAGAAACCTGG
CGGCCGCGAGTGGTTGATCTACGCTGCACTGCAAGCTAAAAACAAGTCGG
CAAGCTTTCTAGACCAT
BO06429.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2540-RA | 936 | CG2540-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2540-RA | 1234 | CG2540-RA | 82..1014 | 17..949 | 4665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12629959..12630891 | 17..949 | 4665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:00:55 has no hits.
BO06429.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:45 Download gff for
BO06429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2540-RA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:46 Download gff for
BO06429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2540-RA | 47..982 | 11..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:53 Download gff for
BO06429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2540-RA | 87..1014 | 22..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:45 Download gff for
BO06429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2540-RA | 47..982 | 11..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:35 Download gff for
BO06429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2540-RA | 87..1014 | 22..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:35 Download gff for
BO06429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12629964..12630891 | 22..951 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:53 Download gff for
BO06429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12523997..12524924 | 22..951 | 99 | | Plus |
BO06429.pep Sequence
Translation from 16 to 967
> BO06429.pep
MLDFLTELRSSGSRADQLPGNIYTEFFANVIEEPREHGCKSADQDFTQGF
SMLRTFDTENSNQLEPPAATDADVWIFGYGSLVWKTDFPYIDRRRGFVWG
FKRRFYQHSIDHRGIPERPGRVVTLLPGDPAQDRVYGVAYRIAASQKGAV
LDHLDYREKNGYERCSLEFHEYPTDGAEPIQVIMYVATQANDSYAGDVWQ
VPCIARQIFSSAGPSGPNREYLFNLAAAMDQLFPGAVDEHLEELVACVKR
YIVEDEPQLIRHALLHEISGILEEEQLAEQAHQLEKLLERCQKPGGREWL
IYAALQAKNKSASFLDH
BO06429.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2540-PA | 311 | CG2540-PA | 1..311 | 1..311 | 1656 | 100 | Plus |
CG10365-PD | 284 | CG10365-PD | 46..228 | 60..244 | 303 | 40.9 | Plus |
CG10365-PA | 284 | CG10365-PA | 46..228 | 60..244 | 303 | 40.9 | Plus |
CG10365-PB | 284 | CG10365-PB | 46..228 | 60..244 | 303 | 40.9 | Plus |
CG10365-PC | 284 | CG10365-PC | 46..228 | 60..244 | 303 | 40.9 | Plus |