Clone BO06429 Report

Search the DGRC for BO06429

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG2540-RA
Protein status:BO06429.pep: validated full length
Sequenced Size:967

Clone Sequence Records

BO06429.3prime Sequence

872 bp (846 high quality bases) assembled on 2005-12-03

> BO06429.3prime
ATGGTCTAGAAAGCTTGCCGACTTGTTTTTAGCTTGCAGTGCAGCGTAGA
TCAACCACTCGCGGCCGCCAGGTTTCTGACATCGCTCCAAAAGCTTCTCC
AGCTGGTGTGCCTGCTCCGCTAGCTGTTCCTCCTCCAGAATACCGGAAAT
CTCATGCAACAGCGCATGGCGTATTAACTGGGGCTCATCCTCGACAATGT
AACGCTTAACGCAAGCAACCAGTTCTTCGAGATGCTCGTCTACAGCTCCC
GGAAAGAGCTGATCCATGGCGGCGGCCAGGTTGAATAGGTATTCGCGATT
GGGGCCACTGGGACCGGCCGAGCTGAAGATTTGCCTCGCAATACAGGGAA
CTTGCCACACATCACCAGCATAGGAATCGTTCGCCTGCGTGGCCACGTAC
ATGATCACTTGGATGGGTTCTGCACCGTCAGTCGGATACTCGTGGAACTC
CAAGCTGCAGCGCTCATACCCGTTCTTCTCCCGGTAATCCAGATGGTCCA
ACACAGCACCCTTTTGACTAGCAGCTATGCGATAGGCGACGCCATAGACA
CGATCCTGGGCGGGATCGCCTGGCAGCAGGGTGACCACGCGACCAGGACG
TTCGGGAATACCCCGGTGATCGATGCTGTGCTGGTAGAAGCGACGCTTGA
ATCCCCAAACGAAGCCGCGTCGTCGGTCTATGTACGGGAAGTCCGTCTTC
CATACCAACGACCCATAGCCAAAGATCCAGACATCCGCATCCGTGGCCGC
CGGCGGCTCCAATTGATTGCTATTTTCGGTATCGAAAGTGCGTAGCATGG
AGAATCCTTGTGTAAAATCCTGATCCGCTGACTTGCATCCATGTTCCCTG
GGCTCCTCGATAACGTTCGCGA

BO06429.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2540-PA 936 CG2540-RA 80..933 872..19 4270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2540-RA 1234 CG2540-RA 161..1014 872..19 4270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12630038..12630891 872..19 4270 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:43:13 has no hits.

BO06429.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:17 Download gff for BO06429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2540-PA 81..936 16..871 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:51 Download gff for BO06429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2540-PA 81..936 16..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:15 Download gff for BO06429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 162..1014 19..871 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:19 Download gff for BO06429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 162..1014 19..871 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:19 Download gff for BO06429.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12630039..12630891 19..871 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:15 Download gff for BO06429.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12524072..12524924 19..871 100   Minus

BO06429.5prime Sequence

960 bp (820 high quality bases) assembled on 2005-12-03

> BO06429.5prime
GAAGTTATCAGTCGACATGTTGGACTTCCTGACGGAGCTGCGAAGCAGTG
GTTCTAGGGCGGATCAGCTGCCCGGCAACATATACACCGAGTTCTTCGCG
AACGTTATCGAGGAGCCCAGGGAACATGGATGCAAGTCAGCGGATCAGGA
TTTTACACAAGGATTCTCCATGCTACGCACTTTCGATACCGAAAATAGCA
ATCAATTGGAGCCGCCGGCGGCCACGGATGCGGATGTCTGGATCTTTGGC
TATGGGTCGTTGGTATGGAAGACGGACTTCCCGTACATAGACCGACGACG
CGGCTTCGTTTGGGGATTCAAGCGTCGCTTCTACCAGCACAGCATCGATC
ACCGGGGTATTCCCGAACGTCCTGGTCGCGTGGTCACCCTGCTGCCAGGC
GATCCCGCCCAGGATCGTGTCTATGGCGTCGCCTATCGCATAGCTGCTAG
TCAAAAGGGTGCTGTGTTGGACCATCTGGATTACCGGGAGAAGAACGGGT
ATGAGCGCTGCAGCTTGGAGTTCCACGAGTATCCGACTGACGGTGCAGAA
CCCATCCAAGTGATCATGTACGTGGCCACGCAGGCGAACGATTCCTATGC
TGGTGATGTGTGGCAAGTTCCCTGTATTGCGAGGCAAATCTTCAGCTCGG
CCGGTCCCAGTGGCCCCAATCGCGAATACCTATTCAACCTGGCCGCCGCC
ATGGATCAGCTCTTTCCGGGAGCTGTAGACGAGCATCTCGAAGAACTGGT
TGCTTGCGTTAAGCGTTACATTGTCGAGGATGAGCCCCAGTTAATACGCC
ATGCGCTGTTGCATGAGATTTCCGGTATTCTGGAGGAGGAACAGCTAGCG
GAGCAGGCACACCAGCTGGAGAAGCTTTTGGAGCGATGTCAGAAACCTGG
CGGCCGCGAGTGGTTGATCTACGCTGCACTGGCAAGCTAAAAACAGTCGG
GCAGCTTTCT

BO06429.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2540-PA 936 CG2540-RA 1..915 17..931 4575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2540-RA 1234 CG2540-RA 82..1009 17..945 4620 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12629959..12630886 17..945 4595 99.9 Plus
Blast to na_te.dros performed on 2015-02-13 16:00:06 has no hits.

BO06429.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:18 Download gff for BO06429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2540-PA 1..936 17..953 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:53 Download gff for BO06429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2540-PA 1..936 17..953 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:42 Download gff for BO06429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 79..1014 11..949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:33:33 Download gff for BO06429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 79..1014 11..949 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:33:33 Download gff for BO06429.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12629956..12630891 11..949 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:42 Download gff for BO06429.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12523989..12524924 11..949 99   Plus

BO06429.complete Sequence

967 bp (967 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630396

> BO06429.complete
GAAGTTATCAGTCGACATGTTGGACTTCCTGACGGAGCTGCGAAGCAGTG
GTTCTAGGGCGGATCAGCTGCCCGGCAACATATACACCGAGTTCTTCGCG
AACGTTATCGAGGAGCCCAGGGAACATGGATGCAAGTCAGCGGATCAGGA
TTTTACACAAGGATTCTCCATGCTACGCACTTTCGATACCGAAAATAGCA
ATCAATTGGAGCCGCCGGCGGCCACGGATGCGGATGTCTGGATCTTTGGC
TATGGGTCGTTGGTATGGAAGACGGACTTCCCGTACATAGACCGACGACG
CGGCTTCGTTTGGGGATTCAAGCGTCGCTTCTACCAGCACAGCATCGATC
ACCGGGGTATTCCCGAACGTCCTGGTCGCGTGGTCACCCTGCTGCCAGGC
GATCCCGCCCAGGATCGTGTCTATGGCGTCGCCTATCGCATAGCTGCTAG
TCAAAAGGGTGCTGTGTTGGACCATCTGGATTACCGGGAGAAGAACGGGT
ATGAGCGCTGCAGCTTGGAGTTCCACGAGTATCCGACTGACGGTGCAGAA
CCCATCCAAGTGATCATGTACGTGGCCACGCAGGCGAACGATTCCTATGC
TGGTGATGTGTGGCAAGTTCCCTGTATTGCGAGGCAAATCTTCAGCTCGG
CCGGTCCCAGTGGCCCCAATCGCGAATACCTATTCAACCTGGCCGCCGCC
ATGGATCAGCTCTTTCCGGGAGCTGTAGACGAGCATCTCGAAGAACTGGT
TGCTTGCGTTAAGCGTTACATTGTCGAGGATGAGCCCCAGTTAATACGCC
ATGCGCTGTTGCATGAGATTTCCGGTATTCTGGAGGAGGAACAGCTAGCG
GAGCAGGCACACCAGCTGGAGAAGCTTTTGGAGCGATGTCAGAAACCTGG
CGGCCGCGAGTGGTTGATCTACGCTGCACTGCAAGCTAAAAACAAGTCGG
CAAGCTTTCTAGACCAT

BO06429.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2540-RA 936 CG2540-PA 1..933 17..949 4665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2540-RA 1234 CG2540-RA 82..1014 17..949 4665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12629959..12630891 17..949 4665 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:00:55 has no hits.

BO06429.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:45 Download gff for BO06429.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 1..936 17..952 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:46 Download gff for BO06429.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 47..982 11..949 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:53 Download gff for BO06429.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 87..1014 22..951 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:45 Download gff for BO06429.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 47..982 11..949 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:35 Download gff for BO06429.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 87..1014 22..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:35 Download gff for BO06429.complete
Subject Subject Range Query Range Percent Splice Strand
X 12629964..12630891 22..951 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:53 Download gff for BO06429.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12523997..12524924 22..951 99   Plus

BO06429.pep Sequence

Translation from 16 to 967

> BO06429.pep
MLDFLTELRSSGSRADQLPGNIYTEFFANVIEEPREHGCKSADQDFTQGF
SMLRTFDTENSNQLEPPAATDADVWIFGYGSLVWKTDFPYIDRRRGFVWG
FKRRFYQHSIDHRGIPERPGRVVTLLPGDPAQDRVYGVAYRIAASQKGAV
LDHLDYREKNGYERCSLEFHEYPTDGAEPIQVIMYVATQANDSYAGDVWQ
VPCIARQIFSSAGPSGPNREYLFNLAAAMDQLFPGAVDEHLEELVACVKR
YIVEDEPQLIRHALLHEISGILEEEQLAEQAHQLEKLLERCQKPGGREWL
IYAALQAKNKSASFLDH

BO06429.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2540-PA 311 CG2540-PA 1..311 1..311 1656 100 Plus
CG10365-PD 284 CG10365-PD 46..228 60..244 303 40.9 Plus
CG10365-PA 284 CG10365-PA 46..228 60..244 303 40.9 Plus
CG10365-PB 284 CG10365-PB 46..228 60..244 303 40.9 Plus
CG10365-PC 284 CG10365-PC 46..228 60..244 303 40.9 Plus