Clone Sequence Records
BO06432.3prime Sequence
758 bp (757 high quality bases) assembled on 2005-12-03
> BO06432.3prime
ATGGTCTAGAAAGCTTGCGTTGTTCTTGGCAAAGTACTTCGTCTTCTCCT
CAGGATTGGGAACGATCGTATCGGCACCTGGCCGCCAACCTGCTGGGCAA
ACCTCTCCATGGGTGTCCGTATACTGGAAGGCCTGAACCAGACGAATAGT
CTCGTCCACAGAGCGTCCCACGGGCAAATCATTCATGGTGATCTGTCGCA
GCACTCCGGTCTGATCGATAATGAAGAGACCGCGCAGCGCATGACCGCTG
GACTCCAAGTAGACTCCGTAGTCCTTGCTGATCTTATGCGTTAGATCGGA
GAGCAGTGGGATCTTCACGTCGCCCAGGCCGCCCTCCTTGCGCGGCGTGT
TTATCCAGGCCAAGTGGGTGAAGTGCGAGTCCACGCTGACGCCAATCACC
TCGGTCTTGATCTTCTTGAACTCGGCGATGCGGTCGGAGAAGGCAATGAT
CTCCGTTGGGCATACAAAGGTGAAGTCCAGTGGGTAGAAGAGTAGCACCA
CATATTTCCCTAGATACTGGGACAATGATAGCTTCACAATCTCCTTATTA
ACCACGGCGGTGCCCTCGAACTGCGGAGCTGGCTTGGAAATGACTGCCTT
GGTGTACTGCAGCTGATGGTCGCCCTTCGGCTGGTCGGGATAAACGGAGC
CGCCGGCGAAGGAATAGCACGATTCATTATCTTCCGGCTTGGCAGCTCCA
ACGAGTGCCGCGGACAGCAGTAGGACAGATAAGTACTTGGACATGTCGAC
TGATAACT
BO06432.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1274-PA | 729 | Jafrac2-RA | 1..726 | 744..19 | 3630 | 100 | Minus |
CG1274-PB | 729 | Jafrac2-RB | 1..726 | 744..19 | 3630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac2-RC | 1007 | CG1274-RC | 59..785 | 745..19 | 3635 | 100 | Minus |
Jafrac2-RB | 1178 | CG1274-RB | 230..956 | 745..19 | 3635 | 100 | Minus |
Jafrac2-RA | 1047 | CG1274-RA | 99..825 | 745..19 | 3635 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3043441..3043846 | 472..67 | 2030 | 100 | Minus |
3L | 28110227 | 3L | 3043051..3043205 | 745..591 | 775 | 100 | Minus |
3L | 28110227 | 3L | 3043272..3043389 | 590..473 | 590 | 100 | Minus |
X | 23542271 | X | 13331215..13331420 | 507..302 | 340 | 77.7 | Minus |
3L | 28110227 | 3L | 3043904..3043952 | 67..19 | 245 | 100 | Minus |
3L | 28110227 | 3L | 26297190..26297250 | 745..685 | 245 | 93.4 | Minus |
3L | 28110227 | 3L | 26352859..26352919 | 745..685 | 245 | 93.4 | Minus |
3L | 28110227 | 3L | 26617408..26617468 | 745..685 | 245 | 93.4 | Minus |
3L | 28110227 | 3L | 26623291..26623351 | 745..685 | 245 | 93.4 | Minus |
3L | 28110227 | 3L | 27065954..27066014 | 745..685 | 245 | 93.4 | Minus |
3CEN | 744266 | 3CEN | 543958..544018 | 685..745 | 245 | 93.4 | Plus |
X | 23542271 | X | 13331522..13331627 | 200..95 | 185 | 78.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:35:03 has no hits.
BO06432.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:23 Download gff for
BO06432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1274-PB | 1..729 | 18..744 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:59 Download gff for
BO06432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1274-PB | 1..729 | 18..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:58 Download gff for
BO06432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RA | 95..825 | 19..752 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:22 Download gff for
BO06432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RA | 95..825 | 19..752 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:22 Download gff for
BO06432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3043041..3043205 | 591..753 | 97 | -> | Minus |
3L | 3043272..3043389 | 473..590 | 100 | -> | Minus |
3L | 3043441..3043846 | 67..472 | 100 | -> | Minus |
3L | 3043905..3043952 | 19..66 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:58 Download gff for
BO06432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3043041..3043205 | 591..753 | 97 | -> | Minus |
arm_3L | 3043272..3043389 | 473..590 | 100 | -> | Minus |
arm_3L | 3043441..3043846 | 67..472 | 100 | -> | Minus |
arm_3L | 3043905..3043952 | 19..66 | 100 | | Minus |
BO06432.5prime Sequence
758 bp (757 high quality bases) assembled on 2005-12-03
> BO06432.5prime
GAAGTTATCAGTCGACATGTCCAAGTACTTATCTGTCCTACTGCTGTCCG
CGGCACTCGTTGGAGCTGCCAAGCCGGAAGATAATGAATCGTGCTATTCC
TTCGCCGGCGGCTCCGTTTATCCCGACCAGCCGAAGGGCGACCATCAGCT
GCAGTACACCAAGGCAGTCATTTCCAAGCCAGCTCCGCAGTTCGAGGGCA
CCGCCGTGGTTAATAAGGAGATTGTGAAGCTATCATTGTCCCAGTATCTA
GGGAAATATGTGGTGCTACTCTTCTACCCACTGGACTTCACCTTTGTATG
CCCAACGGAGATCATTGCCTTCTCCGACCGCATCGCCGAGTTCAAGAAGA
TCAAGACCGAGGTGATTGGCGTCAGCGTGGACTCGCACTTCACCCACTTG
GCCTGGATAAACACGCCGCGCAAGGAGGGCGGCCTGGGCGACGTGAAGAT
CCCACTGCTCTCCGATCTAACGCATAAGATCAGCAAGGACTACGGAGTCT
ACTTGGAGTCCAGCGGTCATGCGCTGCGCGGTCTCTTCATTATCGATCAG
ACCGGAGTGCTGCGACAGATCACCATGAATGATTTGCCCGTGGGACGCTC
TGTGGACGAGACTATTCGTCTGGTTCAGGCCTTCCAGTATACGGACACCC
ATGGAGAGGTTTGCCCAGCAGGTTGGCGGCCAGGTGCCGATACGATCGTT
CCCAATCCTGAGGAGAAGACGAAGTACTTTGCCAAGAACAACGCAAGCTT
TCTAGACC
BO06432.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1274-PA | 729 | Jafrac2-RA | 1..726 | 17..742 | 3630 | 100 | Plus |
CG1274-PB | 729 | Jafrac2-RB | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac2-RC | 1007 | CG1274-RC | 59..785 | 16..742 | 3635 | 100 | Plus |
Jafrac2-RB | 1178 | CG1274-RB | 230..956 | 16..742 | 3635 | 100 | Plus |
Jafrac2-RA | 1047 | CG1274-RA | 99..825 | 16..742 | 3635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3043441..3043846 | 289..694 | 2030 | 100 | Plus |
3L | 28110227 | 3L | 3043051..3043205 | 16..170 | 775 | 100 | Plus |
3L | 28110227 | 3L | 3043272..3043389 | 171..288 | 590 | 100 | Plus |
X | 23542271 | X | 13331215..13331420 | 254..459 | 340 | 77.7 | Plus |
3L | 28110227 | 3L | 27065954..27066014 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 3043904..3043952 | 694..742 | 245 | 100 | Plus |
3L | 28110227 | 3L | 26297190..26297250 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 26352859..26352919 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 26617408..26617468 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 26623291..26623351 | 16..76 | 245 | 93.4 | Plus |
3CEN | 744266 | 3CEN | 543958..544018 | 76..16 | 245 | 93.4 | Minus |
X | 23542271 | X | 13331522..13331627 | 561..666 | 185 | 78.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:09:20 has no hits.
BO06432.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:24 Download gff for
BO06432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1274-PB | 1..729 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:00 Download gff for
BO06432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1274-PB | 1..729 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:10 Download gff for
BO06432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RA | 95..825 | 9..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:44 Download gff for
BO06432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RA | 95..825 | 9..742 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:44 Download gff for
BO06432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3043041..3043205 | 8..170 | 97 | -> | Plus |
3L | 3043272..3043389 | 171..288 | 100 | -> | Plus |
3L | 3043441..3043846 | 289..694 | 100 | -> | Plus |
3L | 3043905..3043952 | 695..742 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:10 Download gff for
BO06432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3043041..3043205 | 8..170 | 97 | -> | Plus |
arm_3L | 3043272..3043389 | 171..288 | 100 | -> | Plus |
arm_3L | 3043441..3043846 | 289..694 | 100 | -> | Plus |
arm_3L | 3043905..3043952 | 695..742 | 100 | | Plus |
BO06432.complete Sequence
760 bp (760 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630397
> BO06432.complete
GAAGTTATCAGTCGACATGTCCAAGTACTTATCTGTCCTACTGCTGTCCG
CGGCACTCGTTGGAGCTGCCAAGCCGGAAGATAATGAATCGTGCTATTCC
TTCGCCGGCGGCTCCGTTTATCCCGACCAGCCGAAGGGCGACCATCAGCT
GCAGTACACCAAGGCAGTCATTTCCAAGCCAGCTCCGCAGTTCGAGGGCA
CCGCCGTGGTTAATAAGGAGATTGTGAAGCTATCATTGTCCCAGTATCTA
GGGAAATATGTGGTGCTACTCTTCTACCCACTGGACTTCACCTTTGTATG
CCCAACGGAGATCATTGCCTTCTCCGACCGCATCGCCGAGTTCAAGAAGA
TCAAGACCGAGGTGATTGGCGTCAGCGTGGACTCGCACTTCACCCACTTG
GCCTGGATAAACACGCCGCGCAAGGAGGGCGGCCTGGGCGACGTGAAGAT
CCCACTGCTCTCCGATCTAACGCATAAGATCAGCAAGGACTACGGAGTCT
ACTTGGAGTCCAGCGGTCATGCGCTGCGCGGTCTCTTCATTATCGATCAG
ACCGGAGTGCTGCGACAGATCACCATGAATGATTTGCCCGTGGGACGCTC
TGTGGACGAGACTATTCGTCTGGTTCAGGCCTTCCAGTATACGGACACCC
ATGGAGAGGTTTGCCCAGCAGGTTGGCGGCCAGGTGCCGATACGATCGTT
CCCAATCCTGAGGAGAAGACGAAGTACTTTGCCAAGAACAACGCAAGCTT
TCTAGACCAT
BO06432.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac2-RC | 729 | CG1274-PC | 1..726 | 17..742 | 3630 | 100 | Plus |
Jafrac2-RB | 729 | CG1274-PB | 1..726 | 17..742 | 3630 | 100 | Plus |
Jafrac2-RA | 729 | CG1274-PA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac2-RC | 1007 | CG1274-RC | 59..785 | 16..742 | 3635 | 100 | Plus |
Jafrac2-RB | 1178 | CG1274-RB | 230..956 | 16..742 | 3635 | 100 | Plus |
Jafrac2-RA | 1047 | CG1274-RA | 99..825 | 16..742 | 3635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3043441..3043846 | 289..694 | 2030 | 100 | Plus |
3L | 28110227 | 3L | 3043051..3043205 | 16..170 | 775 | 100 | Plus |
3L | 28110227 | 3L | 3043272..3043389 | 171..288 | 590 | 100 | Plus |
X | 23542271 | X | 13331215..13331420 | 254..459 | 340 | 77.7 | Plus |
3L | 28110227 | 3L | 3043904..3043952 | 694..742 | 245 | 100 | Plus |
3L | 28110227 | 3L | 26297190..26297250 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 26352859..26352919 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 26617408..26617468 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 26623291..26623351 | 16..76 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 27065954..27066014 | 16..76 | 245 | 93.4 | Plus |
3CEN | 744266 | 3CEN | 543958..544018 | 76..16 | 245 | 93.4 | Minus |
X | 23542271 | X | 13331522..13331627 | 561..666 | 185 | 78.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:26:17 has no hits.
BO06432.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:46 Download gff for
BO06432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RB | 1..729 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:47 Download gff for
BO06432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RB | 226..956 | 9..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:52 Download gff for
BO06432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RA | 100..825 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:46 Download gff for
BO06432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RB | 175..905 | 9..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:28 Download gff for
BO06432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac2-RA | 100..825 | 17..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:28 Download gff for
BO06432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3043052..3043205 | 17..170 | 100 | -> | Plus |
3L | 3043272..3043389 | 171..288 | 100 | -> | Plus |
3L | 3043441..3043846 | 289..694 | 100 | -> | Plus |
3L | 3043905..3043952 | 695..744 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:52 Download gff for
BO06432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3043052..3043205 | 17..170 | 100 | -> | Plus |
arm_3L | 3043272..3043389 | 171..288 | 100 | -> | Plus |
arm_3L | 3043441..3043846 | 289..694 | 100 | -> | Plus |
arm_3L | 3043905..3043952 | 695..744 | 96 | | Plus |
BO06432.pep Sequence
Translation from 16 to 760
> BO06432.pep
MSKYLSVLLLSAALVGAAKPEDNESCYSFAGGSVYPDQPKGDHQLQYTKA
VISKPAPQFEGTAVVNKEIVKLSLSQYLGKYVVLLFYPLDFTFVCPTEII
AFSDRIAEFKKIKTEVIGVSVDSHFTHLAWINTPRKEGGLGDVKIPLLSD
LTHKISKDYGVYLESSGHALRGLFIIDQTGVLRQITMNDLPVGRSVDETI
RLVQAFQYTDTHGEVCPAGWRPGADTIVPNPEEKTKYFAKNNASFLDH
BO06432.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac2-PC | 242 | CG1274-PC | 1..242 | 1..242 | 1260 | 100 | Plus |
Jafrac2-PB | 242 | CG1274-PB | 1..242 | 1..242 | 1260 | 100 | Plus |
Jafrac2-PA | 242 | CG1274-PA | 1..242 | 1..242 | 1260 | 100 | Plus |
Jafrac1-PE | 194 | CG1633-PE | 4..190 | 52..238 | 657 | 66.3 | Plus |
Jafrac1-PD | 194 | CG1633-PD | 4..190 | 52..238 | 657 | 66.3 | Plus |