Clone BO06432 Report

Search the DGRC for BO06432

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptJafrac2-RA
Protein status:BO06432.pep: validated full length
Sequenced Size:760

Clone Sequence Records

BO06432.3prime Sequence

758 bp (757 high quality bases) assembled on 2005-12-03

> BO06432.3prime
ATGGTCTAGAAAGCTTGCGTTGTTCTTGGCAAAGTACTTCGTCTTCTCCT
CAGGATTGGGAACGATCGTATCGGCACCTGGCCGCCAACCTGCTGGGCAA
ACCTCTCCATGGGTGTCCGTATACTGGAAGGCCTGAACCAGACGAATAGT
CTCGTCCACAGAGCGTCCCACGGGCAAATCATTCATGGTGATCTGTCGCA
GCACTCCGGTCTGATCGATAATGAAGAGACCGCGCAGCGCATGACCGCTG
GACTCCAAGTAGACTCCGTAGTCCTTGCTGATCTTATGCGTTAGATCGGA
GAGCAGTGGGATCTTCACGTCGCCCAGGCCGCCCTCCTTGCGCGGCGTGT
TTATCCAGGCCAAGTGGGTGAAGTGCGAGTCCACGCTGACGCCAATCACC
TCGGTCTTGATCTTCTTGAACTCGGCGATGCGGTCGGAGAAGGCAATGAT
CTCCGTTGGGCATACAAAGGTGAAGTCCAGTGGGTAGAAGAGTAGCACCA
CATATTTCCCTAGATACTGGGACAATGATAGCTTCACAATCTCCTTATTA
ACCACGGCGGTGCCCTCGAACTGCGGAGCTGGCTTGGAAATGACTGCCTT
GGTGTACTGCAGCTGATGGTCGCCCTTCGGCTGGTCGGGATAAACGGAGC
CGCCGGCGAAGGAATAGCACGATTCATTATCTTCCGGCTTGGCAGCTCCA
ACGAGTGCCGCGGACAGCAGTAGGACAGATAAGTACTTGGACATGTCGAC
TGATAACT

BO06432.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1274-PA 729 Jafrac2-RA 1..726 744..19 3630 100 Minus
CG1274-PB 729 Jafrac2-RB 1..726 744..19 3630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac2-RC 1007 CG1274-RC 59..785 745..19 3635 100 Minus
Jafrac2-RB 1178 CG1274-RB 230..956 745..19 3635 100 Minus
Jafrac2-RA 1047 CG1274-RA 99..825 745..19 3635 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3043441..3043846 472..67 2030 100 Minus
3L 28110227 3L 3043051..3043205 745..591 775 100 Minus
3L 28110227 3L 3043272..3043389 590..473 590 100 Minus
X 23542271 X 13331215..13331420 507..302 340 77.7 Minus
3L 28110227 3L 3043904..3043952 67..19 245 100 Minus
3L 28110227 3L 26297190..26297250 745..685 245 93.4 Minus
3L 28110227 3L 26352859..26352919 745..685 245 93.4 Minus
3L 28110227 3L 26617408..26617468 745..685 245 93.4 Minus
3L 28110227 3L 26623291..26623351 745..685 245 93.4 Minus
3L 28110227 3L 27065954..27066014 745..685 245 93.4 Minus
3CEN 744266 3CEN 543958..544018 685..745 245 93.4 Plus
X 23542271 X 13331522..13331627 200..95 185 78.3 Minus
Blast to na_te.dros performed on 2015-02-12 10:35:03 has no hits.

BO06432.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:23 Download gff for BO06432.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1274-PB 1..729 18..744 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:21:59 Download gff for BO06432.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1274-PB 1..729 18..744 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:58 Download gff for BO06432.3prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RA 95..825 19..752 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:22 Download gff for BO06432.3prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RA 95..825 19..752 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:22 Download gff for BO06432.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3043041..3043205 591..753 97 -> Minus
3L 3043272..3043389 473..590 100 -> Minus
3L 3043441..3043846 67..472 100 -> Minus
3L 3043905..3043952 19..66 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:58 Download gff for BO06432.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3043041..3043205 591..753 97 -> Minus
arm_3L 3043272..3043389 473..590 100 -> Minus
arm_3L 3043441..3043846 67..472 100 -> Minus
arm_3L 3043905..3043952 19..66 100   Minus

BO06432.5prime Sequence

758 bp (757 high quality bases) assembled on 2005-12-03

> BO06432.5prime
GAAGTTATCAGTCGACATGTCCAAGTACTTATCTGTCCTACTGCTGTCCG
CGGCACTCGTTGGAGCTGCCAAGCCGGAAGATAATGAATCGTGCTATTCC
TTCGCCGGCGGCTCCGTTTATCCCGACCAGCCGAAGGGCGACCATCAGCT
GCAGTACACCAAGGCAGTCATTTCCAAGCCAGCTCCGCAGTTCGAGGGCA
CCGCCGTGGTTAATAAGGAGATTGTGAAGCTATCATTGTCCCAGTATCTA
GGGAAATATGTGGTGCTACTCTTCTACCCACTGGACTTCACCTTTGTATG
CCCAACGGAGATCATTGCCTTCTCCGACCGCATCGCCGAGTTCAAGAAGA
TCAAGACCGAGGTGATTGGCGTCAGCGTGGACTCGCACTTCACCCACTTG
GCCTGGATAAACACGCCGCGCAAGGAGGGCGGCCTGGGCGACGTGAAGAT
CCCACTGCTCTCCGATCTAACGCATAAGATCAGCAAGGACTACGGAGTCT
ACTTGGAGTCCAGCGGTCATGCGCTGCGCGGTCTCTTCATTATCGATCAG
ACCGGAGTGCTGCGACAGATCACCATGAATGATTTGCCCGTGGGACGCTC
TGTGGACGAGACTATTCGTCTGGTTCAGGCCTTCCAGTATACGGACACCC
ATGGAGAGGTTTGCCCAGCAGGTTGGCGGCCAGGTGCCGATACGATCGTT
CCCAATCCTGAGGAGAAGACGAAGTACTTTGCCAAGAACAACGCAAGCTT
TCTAGACC

BO06432.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1274-PA 729 Jafrac2-RA 1..726 17..742 3630 100 Plus
CG1274-PB 729 Jafrac2-RB 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac2-RC 1007 CG1274-RC 59..785 16..742 3635 100 Plus
Jafrac2-RB 1178 CG1274-RB 230..956 16..742 3635 100 Plus
Jafrac2-RA 1047 CG1274-RA 99..825 16..742 3635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3043441..3043846 289..694 2030 100 Plus
3L 28110227 3L 3043051..3043205 16..170 775 100 Plus
3L 28110227 3L 3043272..3043389 171..288 590 100 Plus
X 23542271 X 13331215..13331420 254..459 340 77.7 Plus
3L 28110227 3L 27065954..27066014 16..76 245 93.4 Plus
3L 28110227 3L 3043904..3043952 694..742 245 100 Plus
3L 28110227 3L 26297190..26297250 16..76 245 93.4 Plus
3L 28110227 3L 26352859..26352919 16..76 245 93.4 Plus
3L 28110227 3L 26617408..26617468 16..76 245 93.4 Plus
3L 28110227 3L 26623291..26623351 16..76 245 93.4 Plus
3CEN 744266 3CEN 543958..544018 76..16 245 93.4 Minus
X 23542271 X 13331522..13331627 561..666 185 78.3 Plus
Blast to na_te.dros performed on 2015-02-13 01:09:20 has no hits.

BO06432.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:24 Download gff for BO06432.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1274-PB 1..729 17..743 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:00 Download gff for BO06432.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1274-PB 1..729 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:10 Download gff for BO06432.5prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RA 95..825 9..742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:44 Download gff for BO06432.5prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RA 95..825 9..742 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:44 Download gff for BO06432.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3043041..3043205 8..170 97 -> Plus
3L 3043272..3043389 171..288 100 -> Plus
3L 3043441..3043846 289..694 100 -> Plus
3L 3043905..3043952 695..742 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:10 Download gff for BO06432.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3043041..3043205 8..170 97 -> Plus
arm_3L 3043272..3043389 171..288 100 -> Plus
arm_3L 3043441..3043846 289..694 100 -> Plus
arm_3L 3043905..3043952 695..742 100   Plus

BO06432.complete Sequence

760 bp (760 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630397

> BO06432.complete
GAAGTTATCAGTCGACATGTCCAAGTACTTATCTGTCCTACTGCTGTCCG
CGGCACTCGTTGGAGCTGCCAAGCCGGAAGATAATGAATCGTGCTATTCC
TTCGCCGGCGGCTCCGTTTATCCCGACCAGCCGAAGGGCGACCATCAGCT
GCAGTACACCAAGGCAGTCATTTCCAAGCCAGCTCCGCAGTTCGAGGGCA
CCGCCGTGGTTAATAAGGAGATTGTGAAGCTATCATTGTCCCAGTATCTA
GGGAAATATGTGGTGCTACTCTTCTACCCACTGGACTTCACCTTTGTATG
CCCAACGGAGATCATTGCCTTCTCCGACCGCATCGCCGAGTTCAAGAAGA
TCAAGACCGAGGTGATTGGCGTCAGCGTGGACTCGCACTTCACCCACTTG
GCCTGGATAAACACGCCGCGCAAGGAGGGCGGCCTGGGCGACGTGAAGAT
CCCACTGCTCTCCGATCTAACGCATAAGATCAGCAAGGACTACGGAGTCT
ACTTGGAGTCCAGCGGTCATGCGCTGCGCGGTCTCTTCATTATCGATCAG
ACCGGAGTGCTGCGACAGATCACCATGAATGATTTGCCCGTGGGACGCTC
TGTGGACGAGACTATTCGTCTGGTTCAGGCCTTCCAGTATACGGACACCC
ATGGAGAGGTTTGCCCAGCAGGTTGGCGGCCAGGTGCCGATACGATCGTT
CCCAATCCTGAGGAGAAGACGAAGTACTTTGCCAAGAACAACGCAAGCTT
TCTAGACCAT

BO06432.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac2-RC 729 CG1274-PC 1..726 17..742 3630 100 Plus
Jafrac2-RB 729 CG1274-PB 1..726 17..742 3630 100 Plus
Jafrac2-RA 729 CG1274-PA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac2-RC 1007 CG1274-RC 59..785 16..742 3635 100 Plus
Jafrac2-RB 1178 CG1274-RB 230..956 16..742 3635 100 Plus
Jafrac2-RA 1047 CG1274-RA 99..825 16..742 3635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3043441..3043846 289..694 2030 100 Plus
3L 28110227 3L 3043051..3043205 16..170 775 100 Plus
3L 28110227 3L 3043272..3043389 171..288 590 100 Plus
X 23542271 X 13331215..13331420 254..459 340 77.7 Plus
3L 28110227 3L 3043904..3043952 694..742 245 100 Plus
3L 28110227 3L 26297190..26297250 16..76 245 93.4 Plus
3L 28110227 3L 26352859..26352919 16..76 245 93.4 Plus
3L 28110227 3L 26617408..26617468 16..76 245 93.4 Plus
3L 28110227 3L 26623291..26623351 16..76 245 93.4 Plus
3L 28110227 3L 27065954..27066014 16..76 245 93.4 Plus
3CEN 744266 3CEN 543958..544018 76..16 245 93.4 Minus
X 23542271 X 13331522..13331627 561..666 185 78.3 Plus
Blast to na_te.dros performed on 2014-11-27 16:26:17 has no hits.

BO06432.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:46 Download gff for BO06432.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RB 1..729 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:47 Download gff for BO06432.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RB 226..956 9..742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:52 Download gff for BO06432.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RA 100..825 17..744 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:46 Download gff for BO06432.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RB 175..905 9..742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:28 Download gff for BO06432.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac2-RA 100..825 17..744 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:28 Download gff for BO06432.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3043052..3043205 17..170 100 -> Plus
3L 3043272..3043389 171..288 100 -> Plus
3L 3043441..3043846 289..694 100 -> Plus
3L 3043905..3043952 695..744 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:52 Download gff for BO06432.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3043052..3043205 17..170 100 -> Plus
arm_3L 3043272..3043389 171..288 100 -> Plus
arm_3L 3043441..3043846 289..694 100 -> Plus
arm_3L 3043905..3043952 695..744 96   Plus

BO06432.pep Sequence

Translation from 16 to 760

> BO06432.pep
MSKYLSVLLLSAALVGAAKPEDNESCYSFAGGSVYPDQPKGDHQLQYTKA
VISKPAPQFEGTAVVNKEIVKLSLSQYLGKYVVLLFYPLDFTFVCPTEII
AFSDRIAEFKKIKTEVIGVSVDSHFTHLAWINTPRKEGGLGDVKIPLLSD
LTHKISKDYGVYLESSGHALRGLFIIDQTGVLRQITMNDLPVGRSVDETI
RLVQAFQYTDTHGEVCPAGWRPGADTIVPNPEEKTKYFAKNNASFLDH

BO06432.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac2-PC 242 CG1274-PC 1..242 1..242 1260 100 Plus
Jafrac2-PB 242 CG1274-PB 1..242 1..242 1260 100 Plus
Jafrac2-PA 242 CG1274-PA 1..242 1..242 1260 100 Plus
Jafrac1-PE 194 CG1633-PE 4..190 52..238 657 66.3 Plus
Jafrac1-PD 194 CG1633-PD 4..190 52..238 657 66.3 Plus