Clone BO06437 Report

Search the DGRC for BO06437

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG32278-RA
Protein status:BO06437.pep: validated full length
Sequenced Size:367

Clone Sequence Records

BO06437.3prime Sequence

365 bp (364 high quality bases) assembled on 2005-12-03

> BO06437.3prime
ATGGTCTAGAAAGCTTGCGAACTTGAGTTTGCTTAGTGTGTCGGACACTT
TCTGGGCATCGACCCCCTTCTTCTTGTAGCTCTTGATGGGTGCCACAGGT
GCCTTTGGCTTCTTCACCACCAGATCCTTGTGTAGAGTCTTCAGGCTGGC
GTCCAATTTCTCCTGCTTAGCTTTAACAGATTCCTTGATCTGCTTGAGCT
TGCCCTGCACTTCCTTGGGCTTCTTGCCCTTGCCCTTGTTACCGTCGCCC
ACTTTGAATACGTTCTTGGCCTTTTTGGACTTGTTCAGAGCCGACTTTGG
CTTGGCGGCCCCAGGAGTAACCTTCTTGTTGTTTGCCTTGTTGCGACCCA
TGTCGACTGATAACT

BO06437.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32278-PA 336 CG32278-RA 1..333 351..19 1665 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32278-RA 845 CG32278-RA 80..412 351..19 1665 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3171160..3171334 193..19 875 100 Minus
3L 28110227 3L 3170945..3171106 351..190 810 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:11:19 has no hits.

BO06437.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:33 Download gff for BO06437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-PA 1..336 15..351 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:13 Download gff for BO06437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-PA 1..336 15..351 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:59:03 Download gff for BO06437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 70..421 8..361 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:53 Download gff for BO06437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 70..421 8..361 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:53 Download gff for BO06437.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3171164..3171343 8..189 97   Minus
3L 3170945..3171106 190..351 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:59:03 Download gff for BO06437.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3171164..3171343 8..189 97   Minus
arm_3L 3170945..3171106 190..351 100 -> Minus

BO06437.5prime Sequence

365 bp (364 high quality bases) assembled on 2005-12-03

> BO06437.5prime
GAAGTTATCAGTCGACATGGGTCGCAACAAGGCAAACAACAAGAAGGTTA
CTCCTGGGGCCGCCAAGCCAAAGTCGGCTCTGAACAAGTCCAAAAAGGCC
AAGAACGTATTCAAAGTGGGCGACGGTAACAAGGGCAAGGGCAAGAAGCC
CAAGGAAGTGCAGGGCAAGCTCAAGCAGATCAAGGAATCTGTTAAAGCTA
AGCAGGAGAAATTGGACGCCAGCCTGAAGACTCTACACAAGGATCTGGTG
GTGAAGAAGCCAAAGGCACCTGTGGCACCCATCAAGAGCTACAAGAAGAA
GGGGGTCGATGCCCAGAAAGTGTCCGACACACTAAGCAAACTCAAGTTCG
CAAGCTTTCTAGACC

BO06437.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG32278-PA 336 CG32278-RA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32278-RA 845 CG32278-RA 80..412 17..349 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3171160..3171334 175..349 875 100 Plus
3L 28110227 3L 3170945..3171106 17..178 810 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:04:12 has no hits.

BO06437.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:34 Download gff for BO06437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-PA 1..336 17..353 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:15 Download gff for BO06437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-PA 1..336 17..353 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:41 Download gff for BO06437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 70..421 7..360 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:11 Download gff for BO06437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 70..421 7..360 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:11 Download gff for BO06437.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3170945..3171106 17..178 100 -> Plus
3L 3171164..3171343 179..360 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:41 Download gff for BO06437.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3170945..3171106 17..178 100 -> Plus
arm_3L 3171164..3171343 179..360 97   Plus

BO06437.complete Sequence

367 bp (367 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630400

> BO06437.complete
GAAGTTATCAGTCGACATGGGTCGCAACAAGGCAAACAACAAGAAGGTTA
CTCCTGGGGCCGCCAAGCCAAAGTCGGCTCTGAACAAGTCCAAAAAGGCC
AAGAACGTATTCAAAGTGGGCGACGGTAACAAGGGCAAGGGCAAGAAGCC
CAAGGAAGTGCAGGGCAAGCTCAAGCAGATCAAGGAATCTGTTAAAGCTA
AGCAGGAGAAATTGGACGCCAGCCTGAAGACTCTACACAAGGATCTGGTG
GTGAAGAAGCCAAAGGCACCTGTGGCACCCATCAAGAGCTACAAGAAGAA
GGGGGTCGATGCCCAGAAAGTGTCCGACACACTAAGCAAACTCAAGTTCG
CAAGCTTTCTAGACCAT

BO06437.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32278-RA 336 CG32278-PA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32278-RA 845 CG32278-RA 80..412 17..349 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3171160..3171334 175..349 875 100 Plus
3L 28110227 3L 3170945..3171106 17..178 810 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:40:01 has no hits.

BO06437.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:14 Download gff for BO06437.complete
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 1..336 17..353 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:25 Download gff for BO06437.complete
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 69..420 7..360 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:58 Download gff for BO06437.complete
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 80..412 17..351 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:14 Download gff for BO06437.complete
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 69..420 7..360 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:45 Download gff for BO06437.complete
Subject Subject Range Query Range Percent Splice Strand
CG32278-RA 80..412 17..351 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:45 Download gff for BO06437.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3170945..3171106 17..178 100 -> Plus
3L 3171164..3171334 179..351 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:58 Download gff for BO06437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3170945..3171106 17..178 100 -> Plus
arm_3L 3171164..3171334 179..351 98   Plus

BO06437.pep Sequence

Translation from 16 to 367

> BO06437.pep
MGRNKANNKKVTPGAAKPKSALNKSKKAKNVFKVGDGNKGKGKKPKEVQG
KLKQIKESVKAKQEKLDASLKTLHKDLVVKKPKAPVAPIKSYKKKGVDAQ
KVSDTLSKLKFASFLDH

BO06437.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32278-PA 111 CG32278-PA 1..111 1..111 556 100 Plus