Clone Sequence Records
BO06437.3prime Sequence
365 bp (364 high quality bases) assembled on 2005-12-03
> BO06437.3prime
ATGGTCTAGAAAGCTTGCGAACTTGAGTTTGCTTAGTGTGTCGGACACTT
TCTGGGCATCGACCCCCTTCTTCTTGTAGCTCTTGATGGGTGCCACAGGT
GCCTTTGGCTTCTTCACCACCAGATCCTTGTGTAGAGTCTTCAGGCTGGC
GTCCAATTTCTCCTGCTTAGCTTTAACAGATTCCTTGATCTGCTTGAGCT
TGCCCTGCACTTCCTTGGGCTTCTTGCCCTTGCCCTTGTTACCGTCGCCC
ACTTTGAATACGTTCTTGGCCTTTTTGGACTTGTTCAGAGCCGACTTTGG
CTTGGCGGCCCCAGGAGTAACCTTCTTGTTGTTTGCCTTGTTGCGACCCA
TGTCGACTGATAACT
BO06437.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32278-PA | 336 | CG32278-RA | 1..333 | 351..19 | 1665 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32278-RA | 845 | CG32278-RA | 80..412 | 351..19 | 1665 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3171160..3171334 | 193..19 | 875 | 100 | Minus |
3L | 28110227 | 3L | 3170945..3171106 | 351..190 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:11:19 has no hits.
BO06437.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:33 Download gff for
BO06437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32278-PA | 1..336 | 15..351 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:13 Download gff for
BO06437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32278-PA | 1..336 | 15..351 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:59:03 Download gff for
BO06437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32278-RA | 70..421 | 8..361 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:53 Download gff for
BO06437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32278-RA | 70..421 | 8..361 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:53 Download gff for
BO06437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3171164..3171343 | 8..189 | 97 | | Minus |
3L | 3170945..3171106 | 190..351 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:59:03 Download gff for
BO06437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3171164..3171343 | 8..189 | 97 | | Minus |
arm_3L | 3170945..3171106 | 190..351 | 100 | -> | Minus |
BO06437.5prime Sequence
365 bp (364 high quality bases) assembled on 2005-12-03
> BO06437.5prime
GAAGTTATCAGTCGACATGGGTCGCAACAAGGCAAACAACAAGAAGGTTA
CTCCTGGGGCCGCCAAGCCAAAGTCGGCTCTGAACAAGTCCAAAAAGGCC
AAGAACGTATTCAAAGTGGGCGACGGTAACAAGGGCAAGGGCAAGAAGCC
CAAGGAAGTGCAGGGCAAGCTCAAGCAGATCAAGGAATCTGTTAAAGCTA
AGCAGGAGAAATTGGACGCCAGCCTGAAGACTCTACACAAGGATCTGGTG
GTGAAGAAGCCAAAGGCACCTGTGGCACCCATCAAGAGCTACAAGAAGAA
GGGGGTCGATGCCCAGAAAGTGTCCGACACACTAAGCAAACTCAAGTTCG
CAAGCTTTCTAGACC
BO06437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32278-PA | 336 | CG32278-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32278-RA | 845 | CG32278-RA | 80..412 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3171160..3171334 | 175..349 | 875 | 100 | Plus |
3L | 28110227 | 3L | 3170945..3171106 | 17..178 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:04:12 has no hits.
BO06437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:34 Download gff for
BO06437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32278-PA | 1..336 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:15 Download gff for
BO06437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32278-PA | 1..336 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:41 Download gff for
BO06437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32278-RA | 70..421 | 7..360 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:11 Download gff for
BO06437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32278-RA | 70..421 | 7..360 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:11 Download gff for
BO06437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3170945..3171106 | 17..178 | 100 | -> | Plus |
3L | 3171164..3171343 | 179..360 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:41 Download gff for
BO06437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3170945..3171106 | 17..178 | 100 | -> | Plus |
arm_3L | 3171164..3171343 | 179..360 | 97 | | Plus |
BO06437.complete Sequence
367 bp (367 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630400
> BO06437.complete
GAAGTTATCAGTCGACATGGGTCGCAACAAGGCAAACAACAAGAAGGTTA
CTCCTGGGGCCGCCAAGCCAAAGTCGGCTCTGAACAAGTCCAAAAAGGCC
AAGAACGTATTCAAAGTGGGCGACGGTAACAAGGGCAAGGGCAAGAAGCC
CAAGGAAGTGCAGGGCAAGCTCAAGCAGATCAAGGAATCTGTTAAAGCTA
AGCAGGAGAAATTGGACGCCAGCCTGAAGACTCTACACAAGGATCTGGTG
GTGAAGAAGCCAAAGGCACCTGTGGCACCCATCAAGAGCTACAAGAAGAA
GGGGGTCGATGCCCAGAAAGTGTCCGACACACTAAGCAAACTCAAGTTCG
CAAGCTTTCTAGACCAT
BO06437.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32278-RA | 336 | CG32278-PA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32278-RA | 845 | CG32278-RA | 80..412 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3171160..3171334 | 175..349 | 875 | 100 | Plus |
3L | 28110227 | 3L | 3170945..3171106 | 17..178 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:40:01 has no hits.
BO06437.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:14 Download gff for
BO06437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32278-RA | 1..336 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:25 Download gff for
BO06437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32278-RA | 69..420 | 7..360 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:58 Download gff for
BO06437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32278-RA | 80..412 | 17..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:14 Download gff for
BO06437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32278-RA | 69..420 | 7..360 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:45 Download gff for
BO06437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32278-RA | 80..412 | 17..351 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:45 Download gff for
BO06437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3170945..3171106 | 17..178 | 100 | -> | Plus |
3L | 3171164..3171334 | 179..351 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:58 Download gff for
BO06437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3170945..3171106 | 17..178 | 100 | -> | Plus |
arm_3L | 3171164..3171334 | 179..351 | 98 | | Plus |
BO06437.pep Sequence
Translation from 16 to 367
> BO06437.pep
MGRNKANNKKVTPGAAKPKSALNKSKKAKNVFKVGDGNKGKGKKPKEVQG
KLKQIKESVKAKQEKLDASLKTLHKDLVVKKPKAPVAPIKSYKKKGVDAQ
KVSDTLSKLKFASFLDH
BO06437.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32278-PA | 111 | CG32278-PA | 1..111 | 1..111 | 556 | 100 | Plus |