Clone Sequence Records
BO06438.3prime Sequence
578 bp (577 high quality bases) assembled on 2005-12-03
> BO06438.3prime
ATGGTCTAGAAAGCTTGCAAGGACACTGGCATACCTTTGGTTGATATATG
CCTTGGTGTGGTAATTATAAGTTCTTATCGAGGCCGCCAGTGTTTGAATT
AGTTGTTTGTCCCTCTTTGCCGGTGCATACGAATCAATGTCACTGCCACT
GATATTCCGTGTGCGCAGGACACGTTCCGCCCACGTCTGTGGTCTTGGTA
TTTCCCGGGCCACTCCAGTTTGTTTTTTGTCGATATAGTCAATTACATCA
TCGTAATAGTTGGTTCTGTAGTTGTACATGTATTTGTATTGCAGAAACTT
CGGCCTGACCCAGTGGCGGTAGAGCTGCACCGGTTTCCTGTAACCATCGT
CTTCTGGCGGAGGCGGCGGTGCTTTGATTTCTTCTACCTCTTCCGGAGCA
GCCTCCTCGTTGGCCGGAGTGCCAGCCACGACGCTATCAGCCTTGTGATC
GGATGCCACACTCGGTGCTTTTGAGGGTGGGGCCGGAGTGCCCGCCTGGG
TGGATGCCGCCTTCTCCTCCTCGCCGCCGTCGTCGAAACCCCATGGATCT
TCTTCGTCTGCCATGTCGACTGATAACT
BO06438.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7445-PA | 549 | fln-RA | 1..546 | 564..19 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fln-RB | 1228 | CG7445-RB | 277..822 | 564..19 | 2730 | 100 | Minus |
fln-RA | 1028 | CG7445-RA | 77..622 | 564..19 | 2730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19990370..19990630 | 304..564 | 1305 | 100 | Plus |
3L | 28110227 | 3L | 19990149..19990308 | 149..308 | 800 | 100 | Plus |
3L | 28110227 | 3L | 19989957..19990090 | 19..152 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:35:11 has no hits.
BO06438.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:35 Download gff for
BO06438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-PA | 1..549 | 18..564 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:16 Download gff for
BO06438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7445-PA | 1..549 | 18..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:59:01 Download gff for
BO06438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 27..589 | 13..575 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:43 Download gff for
BO06438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 68..630 | 13..575 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:43 Download gff for
BO06438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19989949..19990086 | 13..148 | 97 | <- | Plus |
3L | 19990149..19990304 | 149..304 | 100 | <- | Plus |
3L | 19990371..19990641 | 305..578 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:59:01 Download gff for
BO06438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19983471..19983741 | 305..578 | 98 | | Plus |
arm_3L | 19983049..19983186 | 13..148 | 97 | <- | Plus |
arm_3L | 19983249..19983404 | 149..304 | 100 | <- | Plus |
BO06438.5prime Sequence
578 bp (577 high quality bases) assembled on 2005-12-03
> BO06438.5prime
GAAGTTATCAGTCGACATGGCAGACGAAGAAGATCCATGGGGTTTCGACG
ACGGCGGCGAGGAGGAGAAGGCGGCATCCACCCAGGCGGGCACTCCGGCC
CCACCCTCAAAAGCACCGAGTGTGGCATCCGATCACAAGGCTGATAGCGT
CGTGGCTGGCACTCCGGCCAACGAGGAGGCTGCTCCGGAAGAGGTAGAAG
AAATCAAAGCACCGCCGCCTCCGCCAGAAGACGATGGTTACAGGAAACCG
GTGCAGCTCTACCGCCACTGGGTCAGGCCGAAGTTTCTGCAATACAAATA
CATGTACAACTACAGAACCAACTATTACGATGATGTAATTGACTATATCG
ACAAAAAACAAACTGGAGTGGCCCGGGAAATACCAAGACCACAGACGTGG
GCGGAACGTGTCCTGCGCACACGGAATATCAGTGGCAGTGACATTGATTC
GTATGCACCGGCAAAGAGGGACAAACAACTAATTCAAACACTGGCGGCCT
CGATAAGAACTTATAATTACCACACCAAGGCATATATCAACCAAAGGTAT
GCCAGTGTCCTTGCAAGCTTTCTAGACC
BO06438.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7445-PA | 549 | fln-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fln-RB | 1228 | CG7445-RB | 277..822 | 17..562 | 2730 | 100 | Plus |
fln-RA | 1028 | CG7445-RA | 77..622 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:11:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19990370..19990630 | 277..17 | 1305 | 100 | Minus |
3L | 28110227 | 3L | 19990149..19990308 | 432..273 | 800 | 100 | Minus |
3L | 28110227 | 3L | 19989957..19990090 | 562..429 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:11:55 has no hits.
BO06438.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:36 Download gff for
BO06438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-PA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:18 Download gff for
BO06438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7445-PA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:10 Download gff for
BO06438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 27..589 | 6..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:14:17 Download gff for
BO06438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 68..630 | 6..568 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:14:17 Download gff for
BO06438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19989949..19990086 | 433..568 | 97 | <- | Minus |
3L | 19990149..19990304 | 277..432 | 100 | <- | Minus |
3L | 19990371..19990641 | 4..276 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:10 Download gff for
BO06438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19983049..19983186 | 433..568 | 97 | <- | Minus |
arm_3L | 19983249..19983404 | 277..432 | 100 | <- | Minus |
arm_3L | 19983471..19983741 | 4..276 | 98 | | Minus |
BO06438.complete Sequence
580 bp (580 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630401
> BO06438.complete
GAAGTTATCAGTCGACATGGCAGACGAAGAAGATCCATGGGGTTTCGACG
ACGGCGGCGAGGAGGAGAAGGCGGCATCCACCCAGGCGGGCACTCCGGCC
CCACCCTCAAAAGCACCGAGTGTGGCATCCGATCACAAGGCTGATAGCGT
CGTGGCTGGCACTCCGGCCAACGAGGAGGCTGCTCCGGAAGAGGTAGAAG
AAATCAAAGCACCGCCGCCTCCGCCAGAAGACGATGGTTACAGGAAACCG
GTGCAGCTCTACCGCCACTGGGTCAGGCCGAAGTTTCTGCAATACAAATA
CATGTACAACTACAGAACCAACTATTACGATGATGTAATTGACTATATCG
ACAAAAAACAAACTGGAGTGGCCCGGGAAATACCAAGACCACAGACGTGG
GCGGAACGTGTCCTGCGCACACGGAATATCAGTGGCAGTGACATTGATTC
GTATGCACCGGCAAAGAGGGACAAACAACTAATTCAAACACTGGCGGCCT
CGATAAGAACTTATAATTACCACACCAAGGCATATATCAACCAAAGGTAT
GCCAGTGTCCTTGCAAGCTTTCTAGACCAT
BO06438.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fln-RB | 549 | CG7445-PB | 1..546 | 17..562 | 2730 | 100 | Plus |
fln-RA | 549 | CG7445-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fln-RB | 1228 | CG7445-RB | 277..822 | 17..562 | 2730 | 100 | Plus |
fln-RA | 1028 | CG7445-RA | 77..622 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19990370..19990630 | 277..17 | 1305 | 100 | Minus |
3L | 28110227 | 3L | 19990149..19990308 | 432..273 | 800 | 100 | Minus |
3L | 28110227 | 3L | 19989957..19990090 | 562..429 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:57:18 has no hits.
BO06438.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:49 Download gff for
BO06438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:52 Download gff for
BO06438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 15..577 | 6..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:13 Download gff for
BO06438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 36..581 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:49 Download gff for
BO06438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 15..577 | 6..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:37 Download gff for
BO06438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fln-RA | 77..622 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:37 Download gff for
BO06438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19989955..19990086 | 433..564 | 98 | <- | Minus |
3L | 19990149..19990304 | 277..432 | 100 | <- | Minus |
3L | 19990371..19990630 | 17..276 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:13 Download gff for
BO06438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19983055..19983186 | 433..564 | 98 | <- | Minus |
arm_3L | 19983249..19983404 | 277..432 | 100 | <- | Minus |
arm_3L | 19983471..19983730 | 17..276 | 100 | | Minus |
BO06438.pep Sequence
Translation from 16 to 580
> BO06438.pep
MADEEDPWGFDDGGEEEKAASTQAGTPAPPSKAPSVASDHKADSVVAGTP
ANEEAAPEEVEEIKAPPPPPEDDGYRKPVQLYRHWVRPKFLQYKYMYNYR
TNYYDDVIDYIDKKQTGVAREIPRPQTWAERVLRTRNISGSDIDSYAPAK
RDKQLIQTLAASIRTYNYHTKAYINQRYASVLASFLDH
BO06438.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fln-PB | 182 | CG7445-PB | 1..182 | 1..182 | 974 | 100 | Plus |
fln-PA | 182 | CG7445-PA | 1..182 | 1..182 | 974 | 100 | Plus |