Clone BO06438 Report

Search the DGRC for BO06438

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:38
Vector:pDNR-Dual
Associated Gene/Transcriptfln-RA
Protein status:BO06438.pep: validated full length
Sequenced Size:580

Clone Sequence Records

BO06438.3prime Sequence

578 bp (577 high quality bases) assembled on 2005-12-03

> BO06438.3prime
ATGGTCTAGAAAGCTTGCAAGGACACTGGCATACCTTTGGTTGATATATG
CCTTGGTGTGGTAATTATAAGTTCTTATCGAGGCCGCCAGTGTTTGAATT
AGTTGTTTGTCCCTCTTTGCCGGTGCATACGAATCAATGTCACTGCCACT
GATATTCCGTGTGCGCAGGACACGTTCCGCCCACGTCTGTGGTCTTGGTA
TTTCCCGGGCCACTCCAGTTTGTTTTTTGTCGATATAGTCAATTACATCA
TCGTAATAGTTGGTTCTGTAGTTGTACATGTATTTGTATTGCAGAAACTT
CGGCCTGACCCAGTGGCGGTAGAGCTGCACCGGTTTCCTGTAACCATCGT
CTTCTGGCGGAGGCGGCGGTGCTTTGATTTCTTCTACCTCTTCCGGAGCA
GCCTCCTCGTTGGCCGGAGTGCCAGCCACGACGCTATCAGCCTTGTGATC
GGATGCCACACTCGGTGCTTTTGAGGGTGGGGCCGGAGTGCCCGCCTGGG
TGGATGCCGCCTTCTCCTCCTCGCCGCCGTCGTCGAAACCCCATGGATCT
TCTTCGTCTGCCATGTCGACTGATAACT

BO06438.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7445-PA 549 fln-RA 1..546 564..19 2730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
fln-RB 1228 CG7445-RB 277..822 564..19 2730 100 Minus
fln-RA 1028 CG7445-RA 77..622 564..19 2730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19990370..19990630 304..564 1305 100 Plus
3L 28110227 3L 19990149..19990308 149..308 800 100 Plus
3L 28110227 3L 19989957..19990090 19..152 670 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:35:11 has no hits.

BO06438.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:35 Download gff for BO06438.3prime
Subject Subject Range Query Range Percent Splice Strand
fln-PA 1..549 18..564 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:16 Download gff for BO06438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7445-PA 1..549 18..564 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:59:01 Download gff for BO06438.3prime
Subject Subject Range Query Range Percent Splice Strand
fln-RA 27..589 13..575 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:43 Download gff for BO06438.3prime
Subject Subject Range Query Range Percent Splice Strand
fln-RA 68..630 13..575 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:43 Download gff for BO06438.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19989949..19990086 13..148 97 <- Plus
3L 19990149..19990304 149..304 100 <- Plus
3L 19990371..19990641 305..578 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:59:01 Download gff for BO06438.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19983471..19983741 305..578 98   Plus
arm_3L 19983049..19983186 13..148 97 <- Plus
arm_3L 19983249..19983404 149..304 100 <- Plus

BO06438.5prime Sequence

578 bp (577 high quality bases) assembled on 2005-12-03

> BO06438.5prime
GAAGTTATCAGTCGACATGGCAGACGAAGAAGATCCATGGGGTTTCGACG
ACGGCGGCGAGGAGGAGAAGGCGGCATCCACCCAGGCGGGCACTCCGGCC
CCACCCTCAAAAGCACCGAGTGTGGCATCCGATCACAAGGCTGATAGCGT
CGTGGCTGGCACTCCGGCCAACGAGGAGGCTGCTCCGGAAGAGGTAGAAG
AAATCAAAGCACCGCCGCCTCCGCCAGAAGACGATGGTTACAGGAAACCG
GTGCAGCTCTACCGCCACTGGGTCAGGCCGAAGTTTCTGCAATACAAATA
CATGTACAACTACAGAACCAACTATTACGATGATGTAATTGACTATATCG
ACAAAAAACAAACTGGAGTGGCCCGGGAAATACCAAGACCACAGACGTGG
GCGGAACGTGTCCTGCGCACACGGAATATCAGTGGCAGTGACATTGATTC
GTATGCACCGGCAAAGAGGGACAAACAACTAATTCAAACACTGGCGGCCT
CGATAAGAACTTATAATTACCACACCAAGGCATATATCAACCAAAGGTAT
GCCAGTGTCCTTGCAAGCTTTCTAGACC

BO06438.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7445-PA 549 fln-RA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
fln-RB 1228 CG7445-RB 277..822 17..562 2730 100 Plus
fln-RA 1028 CG7445-RA 77..622 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19990370..19990630 277..17 1305 100 Minus
3L 28110227 3L 19990149..19990308 432..273 800 100 Minus
3L 28110227 3L 19989957..19990090 562..429 670 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:11:55 has no hits.

BO06438.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:36 Download gff for BO06438.5prime
Subject Subject Range Query Range Percent Splice Strand
fln-PA 1..549 17..563 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:18 Download gff for BO06438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7445-PA 1..549 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:10 Download gff for BO06438.5prime
Subject Subject Range Query Range Percent Splice Strand
fln-RA 27..589 6..568 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:14:17 Download gff for BO06438.5prime
Subject Subject Range Query Range Percent Splice Strand
fln-RA 68..630 6..568 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:14:17 Download gff for BO06438.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19989949..19990086 433..568 97 <- Minus
3L 19990149..19990304 277..432 100 <- Minus
3L 19990371..19990641 4..276 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:10 Download gff for BO06438.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19983049..19983186 433..568 97 <- Minus
arm_3L 19983249..19983404 277..432 100 <- Minus
arm_3L 19983471..19983741 4..276 98   Minus

BO06438.complete Sequence

580 bp (580 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630401

> BO06438.complete
GAAGTTATCAGTCGACATGGCAGACGAAGAAGATCCATGGGGTTTCGACG
ACGGCGGCGAGGAGGAGAAGGCGGCATCCACCCAGGCGGGCACTCCGGCC
CCACCCTCAAAAGCACCGAGTGTGGCATCCGATCACAAGGCTGATAGCGT
CGTGGCTGGCACTCCGGCCAACGAGGAGGCTGCTCCGGAAGAGGTAGAAG
AAATCAAAGCACCGCCGCCTCCGCCAGAAGACGATGGTTACAGGAAACCG
GTGCAGCTCTACCGCCACTGGGTCAGGCCGAAGTTTCTGCAATACAAATA
CATGTACAACTACAGAACCAACTATTACGATGATGTAATTGACTATATCG
ACAAAAAACAAACTGGAGTGGCCCGGGAAATACCAAGACCACAGACGTGG
GCGGAACGTGTCCTGCGCACACGGAATATCAGTGGCAGTGACATTGATTC
GTATGCACCGGCAAAGAGGGACAAACAACTAATTCAAACACTGGCGGCCT
CGATAAGAACTTATAATTACCACACCAAGGCATATATCAACCAAAGGTAT
GCCAGTGTCCTTGCAAGCTTTCTAGACCAT

BO06438.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
fln-RB 549 CG7445-PB 1..546 17..562 2730 100 Plus
fln-RA 549 CG7445-PA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
fln-RB 1228 CG7445-RB 277..822 17..562 2730 100 Plus
fln-RA 1028 CG7445-RA 77..622 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19990370..19990630 277..17 1305 100 Minus
3L 28110227 3L 19990149..19990308 432..273 800 100 Minus
3L 28110227 3L 19989957..19990090 562..429 670 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:57:18 has no hits.

BO06438.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:49 Download gff for BO06438.complete
Subject Subject Range Query Range Percent Splice Strand
fln-RA 1..549 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:52 Download gff for BO06438.complete
Subject Subject Range Query Range Percent Splice Strand
fln-RA 15..577 6..568 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:13 Download gff for BO06438.complete
Subject Subject Range Query Range Percent Splice Strand
fln-RA 36..581 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:49 Download gff for BO06438.complete
Subject Subject Range Query Range Percent Splice Strand
fln-RA 15..577 6..568 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:37 Download gff for BO06438.complete
Subject Subject Range Query Range Percent Splice Strand
fln-RA 77..622 17..564 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:37 Download gff for BO06438.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19989955..19990086 433..564 98 <- Minus
3L 19990149..19990304 277..432 100 <- Minus
3L 19990371..19990630 17..276 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:13 Download gff for BO06438.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19983055..19983186 433..564 98 <- Minus
arm_3L 19983249..19983404 277..432 100 <- Minus
arm_3L 19983471..19983730 17..276 100   Minus

BO06438.pep Sequence

Translation from 16 to 580

> BO06438.pep
MADEEDPWGFDDGGEEEKAASTQAGTPAPPSKAPSVASDHKADSVVAGTP
ANEEAAPEEVEEIKAPPPPPEDDGYRKPVQLYRHWVRPKFLQYKYMYNYR
TNYYDDVIDYIDKKQTGVAREIPRPQTWAERVLRTRNISGSDIDSYAPAK
RDKQLIQTLAASIRTYNYHTKAYINQRYASVLASFLDH

BO06438.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
fln-PB 182 CG7445-PB 1..182 1..182 974 100 Plus
fln-PA 182 CG7445-PA 1..182 1..182 974 100 Plus