Clone BO06442 Report

Search the DGRC for BO06442

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG17765-RA
Protein status:BO06442.pep: validated full length
Sequenced Size:631

Clone Sequence Records

BO06442.3prime Sequence

629 bp (628 high quality bases) assembled on 2005-12-03

> BO06442.3prime
ATGGTCTAGAAAGCTTGCATACGAGCAGCCAATGGCCACGGTGAGGAAGT
CCTCGAACCCAATGGTGATGGTTCCATTCTGCTGGGTGTCGCGCTGCCTG
AAGGCCTCCGTGAAACGCTGCACCTGCACGCAGAGCACTATGAACTGATC
CACGGACACCTCTTTGTGGCCCTGGGGGTCGCTCTTCTTCACCAGGAAGT
TTATGAATTCGGGCGAGAATCGAAAGCCCATCTGGGTGAAGGCTTGGGTC
AGCTCCTGTTCCTCGATATGTCCAGAGGAGTCCTGATCGTAGGTCTTGAA
GACTTGCAGCCATTGGTTGATGTAGTTGTAGAGCTTCTCGAACTCATAGA
TATCGATGGTACCACTGGCGTCGTTGTCGAACATGCTTATCATCAGCTTG
CAGGCATTATCCGAGAAGTGATCGCCACGCCCATTCACCAGGGCCGCCTG
CAACTCGGAAGCGTTTATCTTTCCAGATCGGTCGCGGTCCACCATGGAGA
ACCATTGCTGTGCCTGCGGAGACACCTGGGCATTCTGCGGCGGAAATGCT
CCTGGCGGCGGGGCATAGCCACCACCGGGCTGGGCATACGGGTTATAGCC
TTGTCCATAAGACATGTCGACTGATAACT

BO06442.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17765-PA 600 CG17765-RA 1..597 615..19 2985 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17765-RA 989 CG17765-RA 93..689 615..19 2985 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10481361..10481586 244..19 1130 100 Minus
2R 25286936 2R 10480323..10480543 606..386 1105 100 Minus
2R 25286936 2R 10481090..10481169 386..307 400 100 Minus
2R 25286936 2R 10481226..10481290 307..243 325 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:58:16 has no hits.

BO06442.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:43 Download gff for BO06442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-PA 1..600 16..615 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:27 Download gff for BO06442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-PA 1..600 16..615 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:29 Download gff for BO06442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 93..695 14..615 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:27:20 Download gff for BO06442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 93..695 14..615 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:27:20 Download gff for BO06442.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10480323..10480542 387..606 100 -> Minus
2R 10481090..10481169 307..386 100 -> Minus
2R 10481227..10481290 243..306 100 -> Minus
2R 10481363..10481592 14..242 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:29 Download gff for BO06442.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6367828..6368047 387..606 100 -> Minus
arm_2R 6368595..6368674 307..386 100 -> Minus
arm_2R 6368732..6368795 243..306 100 -> Minus
arm_2R 6368868..6369097 14..242 99   Minus

BO06442.5prime Sequence

629 bp (628 high quality bases) assembled on 2005-12-03

> BO06442.5prime
GAAGTTATCAGTCGACATGTCTTATGGACAAGGCTATAACCCGTATGCCC
AGCCCGGTGGTGGCTATGCCCCGCCGCCAGGAGCATTTCCGCCGCAGAAT
GCCCAGGTGTCTCCGCAGGCACAGCAATGGTTCTCCATGGTGGACCGCGA
CCGATCTGGAAAGATAAACGCTTCCGAGTTGCAGGCGGCCCTGGTGAATG
GGCGTGGCGATCACTTCTCGGATAATGCCTGCAAGCTGATGATAAGCATG
TTCGACAACGACGCCAGTGGTACCATCGATATCTATGAGTTCGAGAAGCT
CTACAACTACATCAACCAATGGCTGCAAGTCTTCAAGACCTACGATCAGG
ACTCCTCTGGACATATCGAGGAACAGGAGCTGACCCAAGCCTTCACCCAG
ATGGGCTTTCGATTCTCGCCCGAATTCATAAACTTCCTGGTGAAGAAGAG
CGACCCCCAGGGCCACAAAGAGGTGTCCGTGGATCAGTTCATAGTGCTCT
GCGTGCAGGTGCAGCGTTTCACGGAGGCCTTCAGGCAGCGCGACACCCAG
CAGAATGGAACCATCACCATTGGGTTCGAGGACTTCCTCACCGTGGCCAT
TGGCTGCTCGTATGCAAGCTTTCTAGACC

BO06442.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17765-PA 600 CG17765-RA 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17765-RA 989 CG17765-RA 93..689 17..613 2985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10481361..10481586 388..613 1130 100 Plus
2R 25286936 2R 10480323..10480543 26..246 1105 100 Plus
2R 25286936 2R 10481090..10481169 246..325 400 100 Plus
2R 25286936 2R 10481226..10481290 325..389 325 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:46:34 has no hits.

BO06442.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:44 Download gff for BO06442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-PA 1..600 17..616 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:28 Download gff for BO06442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-PA 1..600 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:10 Download gff for BO06442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 93..695 17..618 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:39 Download gff for BO06442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 93..695 17..618 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:39 Download gff for BO06442.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10481363..10481592 390..618 99   Plus
2R 10480323..10480542 26..245 100 -> Plus
2R 10481090..10481169 246..325 100 -> Plus
2R 10481227..10481290 326..389 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:10 Download gff for BO06442.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6367828..6368047 26..245 100 -> Plus
arm_2R 6368595..6368674 246..325 100 -> Plus
arm_2R 6368732..6368795 326..389 100 -> Plus
arm_2R 6368868..6369097 390..618 99   Plus

BO06442.complete Sequence

631 bp (631 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630402

> BO06442.complete
GAAGTTATCAGTCGACATGTCTTATGGACAAGGCTATAACCCGTATGCCC
AGCCCGGTGGTGGCTATGCCCCGCCGCCAGGAGCATTTCCGCCGCAGAAT
GCCCAGGTGTCTCCGCAGGCACAGCAATGGTTCTCCATGGTGGACCGCGA
CCGATCTGGAAAGATAAACGCTTCCGAGTTGCAGGCGGCCCTGGTGAATG
GGCGTGGCGATCACTTCTCGGATAATGCCTGCAAGCTGATGATAAGCATG
TTCGACAACGACGCCAGTGGTACCATCGATATCTATGAGTTCGAGAAGCT
CTACAACTACATCAACCAATGGCTGCAAGTCTTCAAGACCTACGATCAGG
ACTCCTCTGGACATATCGAGGAACAGGAGCTGACCCAAGCCTTCACCCAG
ATGGGCTTTCGATTCTCGCCCGAATTCATAAACTTCCTGGTGAAGAAGAG
CGACCCCCAGGGCCACAAAGAGGTGTCCGTGGATCAGTTCATAGTGCTCT
GCGTGCAGGTGCAGCGTTTCACGGAGGCCTTCAGGCAGCGCGACACCCAG
CAGAATGGAACCATCACCATTGGGTTCGAGGACTTCCTCACCGTGGCCAT
TGGCTGCTCGTATGCAAGCTTTCTAGACCAT

BO06442.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17765-RA 600 CG17765-PA 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17765-RA 989 CG17765-RA 93..689 17..613 2985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10481361..10481586 388..613 1130 100 Plus
2R 25286936 2R 10480323..10480543 26..246 1105 100 Plus
2R 25286936 2R 10481090..10481169 246..325 400 100 Plus
2R 25286936 2R 10481226..10481290 325..389 325 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:06:07 has no hits.

BO06442.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:30 Download gff for BO06442.complete
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 1..600 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:27 Download gff for BO06442.complete
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 96..698 17..618 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:50 Download gff for BO06442.complete
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 93..689 17..615 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:30 Download gff for BO06442.complete
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 96..698 17..618 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:55 Download gff for BO06442.complete
Subject Subject Range Query Range Percent Splice Strand
CG17765-RA 93..689 17..615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:55 Download gff for BO06442.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10480323..10480542 26..245 100 -> Plus
2R 10481090..10481169 246..325 100 -> Plus
2R 10481227..10481290 326..389 100 -> Plus
2R 10481363..10481586 390..615 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:50 Download gff for BO06442.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6367828..6368047 26..245 100 -> Plus
arm_2R 6368595..6368674 246..325 100 -> Plus
arm_2R 6368732..6368795 326..389 100 -> Plus
arm_2R 6368868..6369091 390..615 99   Plus

BO06442.pep Sequence

Translation from 16 to 631

> BO06442.pep
MSYGQGYNPYAQPGGGYAPPPGAFPPQNAQVSPQAQQWFSMVDRDRSGKI
NASELQAALVNGRGDHFSDNACKLMISMFDNDASGTIDIYEFEKLYNYIN
QWLQVFKTYDQDSSGHIEEQELTQAFTQMGFRFSPEFINFLVKKSDPQGH
KEVSVDQFIVLCVQVQRFTEAFRQRDTQQNGTITIGFEDFLTVAIGCSYA
SFLDH

BO06442.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17765-PA 199 CG17765-PA 1..199 1..199 1063 100 Plus
Alg-2-PC 178 CG40410-PC 18..172 39..193 337 41.9 Plus
CalpA-PC 828 CG7563-PC 699..822 67..191 204 30.4 Plus
CalpA-PB 828 CG7563-PB 699..822 67..191 204 30.4 Plus
CalpA-PD 843 CG7563-PD 714..837 67..191 204 30.4 Plus