Clone Sequence Records
BO06442.3prime Sequence
629 bp (628 high quality bases) assembled on 2005-12-03
> BO06442.3prime
ATGGTCTAGAAAGCTTGCATACGAGCAGCCAATGGCCACGGTGAGGAAGT
CCTCGAACCCAATGGTGATGGTTCCATTCTGCTGGGTGTCGCGCTGCCTG
AAGGCCTCCGTGAAACGCTGCACCTGCACGCAGAGCACTATGAACTGATC
CACGGACACCTCTTTGTGGCCCTGGGGGTCGCTCTTCTTCACCAGGAAGT
TTATGAATTCGGGCGAGAATCGAAAGCCCATCTGGGTGAAGGCTTGGGTC
AGCTCCTGTTCCTCGATATGTCCAGAGGAGTCCTGATCGTAGGTCTTGAA
GACTTGCAGCCATTGGTTGATGTAGTTGTAGAGCTTCTCGAACTCATAGA
TATCGATGGTACCACTGGCGTCGTTGTCGAACATGCTTATCATCAGCTTG
CAGGCATTATCCGAGAAGTGATCGCCACGCCCATTCACCAGGGCCGCCTG
CAACTCGGAAGCGTTTATCTTTCCAGATCGGTCGCGGTCCACCATGGAGA
ACCATTGCTGTGCCTGCGGAGACACCTGGGCATTCTGCGGCGGAAATGCT
CCTGGCGGCGGGGCATAGCCACCACCGGGCTGGGCATACGGGTTATAGCC
TTGTCCATAAGACATGTCGACTGATAACT
BO06442.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17765-PA | 600 | CG17765-RA | 1..597 | 615..19 | 2985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17765-RA | 989 | CG17765-RA | 93..689 | 615..19 | 2985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10481361..10481586 | 244..19 | 1130 | 100 | Minus |
2R | 25286936 | 2R | 10480323..10480543 | 606..386 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 10481090..10481169 | 386..307 | 400 | 100 | Minus |
2R | 25286936 | 2R | 10481226..10481290 | 307..243 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:58:16 has no hits.
BO06442.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:43 Download gff for
BO06442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-PA | 1..600 | 16..615 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:27 Download gff for
BO06442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-PA | 1..600 | 16..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:29 Download gff for
BO06442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 93..695 | 14..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:27:20 Download gff for
BO06442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 93..695 | 14..615 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:27:20 Download gff for
BO06442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10480323..10480542 | 387..606 | 100 | -> | Minus |
2R | 10481090..10481169 | 307..386 | 100 | -> | Minus |
2R | 10481227..10481290 | 243..306 | 100 | -> | Minus |
2R | 10481363..10481592 | 14..242 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:29 Download gff for
BO06442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6367828..6368047 | 387..606 | 100 | -> | Minus |
arm_2R | 6368595..6368674 | 307..386 | 100 | -> | Minus |
arm_2R | 6368732..6368795 | 243..306 | 100 | -> | Minus |
arm_2R | 6368868..6369097 | 14..242 | 99 | | Minus |
BO06442.5prime Sequence
629 bp (628 high quality bases) assembled on 2005-12-03
> BO06442.5prime
GAAGTTATCAGTCGACATGTCTTATGGACAAGGCTATAACCCGTATGCCC
AGCCCGGTGGTGGCTATGCCCCGCCGCCAGGAGCATTTCCGCCGCAGAAT
GCCCAGGTGTCTCCGCAGGCACAGCAATGGTTCTCCATGGTGGACCGCGA
CCGATCTGGAAAGATAAACGCTTCCGAGTTGCAGGCGGCCCTGGTGAATG
GGCGTGGCGATCACTTCTCGGATAATGCCTGCAAGCTGATGATAAGCATG
TTCGACAACGACGCCAGTGGTACCATCGATATCTATGAGTTCGAGAAGCT
CTACAACTACATCAACCAATGGCTGCAAGTCTTCAAGACCTACGATCAGG
ACTCCTCTGGACATATCGAGGAACAGGAGCTGACCCAAGCCTTCACCCAG
ATGGGCTTTCGATTCTCGCCCGAATTCATAAACTTCCTGGTGAAGAAGAG
CGACCCCCAGGGCCACAAAGAGGTGTCCGTGGATCAGTTCATAGTGCTCT
GCGTGCAGGTGCAGCGTTTCACGGAGGCCTTCAGGCAGCGCGACACCCAG
CAGAATGGAACCATCACCATTGGGTTCGAGGACTTCCTCACCGTGGCCAT
TGGCTGCTCGTATGCAAGCTTTCTAGACC
BO06442.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17765-PA | 600 | CG17765-RA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17765-RA | 989 | CG17765-RA | 93..689 | 17..613 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10481361..10481586 | 388..613 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 10480323..10480543 | 26..246 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 10481090..10481169 | 246..325 | 400 | 100 | Plus |
2R | 25286936 | 2R | 10481226..10481290 | 325..389 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:46:34 has no hits.
BO06442.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:44 Download gff for
BO06442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-PA | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:28 Download gff for
BO06442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-PA | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:10 Download gff for
BO06442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 93..695 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:39 Download gff for
BO06442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 93..695 | 17..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:39 Download gff for
BO06442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10481363..10481592 | 390..618 | 99 | | Plus |
2R | 10480323..10480542 | 26..245 | 100 | -> | Plus |
2R | 10481090..10481169 | 246..325 | 100 | -> | Plus |
2R | 10481227..10481290 | 326..389 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:10 Download gff for
BO06442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6367828..6368047 | 26..245 | 100 | -> | Plus |
arm_2R | 6368595..6368674 | 246..325 | 100 | -> | Plus |
arm_2R | 6368732..6368795 | 326..389 | 100 | -> | Plus |
arm_2R | 6368868..6369097 | 390..618 | 99 | | Plus |
BO06442.complete Sequence
631 bp (631 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630402
> BO06442.complete
GAAGTTATCAGTCGACATGTCTTATGGACAAGGCTATAACCCGTATGCCC
AGCCCGGTGGTGGCTATGCCCCGCCGCCAGGAGCATTTCCGCCGCAGAAT
GCCCAGGTGTCTCCGCAGGCACAGCAATGGTTCTCCATGGTGGACCGCGA
CCGATCTGGAAAGATAAACGCTTCCGAGTTGCAGGCGGCCCTGGTGAATG
GGCGTGGCGATCACTTCTCGGATAATGCCTGCAAGCTGATGATAAGCATG
TTCGACAACGACGCCAGTGGTACCATCGATATCTATGAGTTCGAGAAGCT
CTACAACTACATCAACCAATGGCTGCAAGTCTTCAAGACCTACGATCAGG
ACTCCTCTGGACATATCGAGGAACAGGAGCTGACCCAAGCCTTCACCCAG
ATGGGCTTTCGATTCTCGCCCGAATTCATAAACTTCCTGGTGAAGAAGAG
CGACCCCCAGGGCCACAAAGAGGTGTCCGTGGATCAGTTCATAGTGCTCT
GCGTGCAGGTGCAGCGTTTCACGGAGGCCTTCAGGCAGCGCGACACCCAG
CAGAATGGAACCATCACCATTGGGTTCGAGGACTTCCTCACCGTGGCCAT
TGGCTGCTCGTATGCAAGCTTTCTAGACCAT
BO06442.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17765-RA | 600 | CG17765-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17765-RA | 989 | CG17765-RA | 93..689 | 17..613 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10481361..10481586 | 388..613 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 10480323..10480543 | 26..246 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 10481090..10481169 | 246..325 | 400 | 100 | Plus |
2R | 25286936 | 2R | 10481226..10481290 | 325..389 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:06:07 has no hits.
BO06442.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:30 Download gff for
BO06442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:27 Download gff for
BO06442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 96..698 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:50 Download gff for
BO06442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 93..689 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:30 Download gff for
BO06442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 96..698 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:55 Download gff for
BO06442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17765-RA | 93..689 | 17..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:55 Download gff for
BO06442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10480323..10480542 | 26..245 | 100 | -> | Plus |
2R | 10481090..10481169 | 246..325 | 100 | -> | Plus |
2R | 10481227..10481290 | 326..389 | 100 | -> | Plus |
2R | 10481363..10481586 | 390..615 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:50 Download gff for
BO06442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6367828..6368047 | 26..245 | 100 | -> | Plus |
arm_2R | 6368595..6368674 | 246..325 | 100 | -> | Plus |
arm_2R | 6368732..6368795 | 326..389 | 100 | -> | Plus |
arm_2R | 6368868..6369091 | 390..615 | 99 | | Plus |
BO06442.pep Sequence
Translation from 16 to 631
> BO06442.pep
MSYGQGYNPYAQPGGGYAPPPGAFPPQNAQVSPQAQQWFSMVDRDRSGKI
NASELQAALVNGRGDHFSDNACKLMISMFDNDASGTIDIYEFEKLYNYIN
QWLQVFKTYDQDSSGHIEEQELTQAFTQMGFRFSPEFINFLVKKSDPQGH
KEVSVDQFIVLCVQVQRFTEAFRQRDTQQNGTITIGFEDFLTVAIGCSYA
SFLDH
BO06442.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17765-PA | 199 | CG17765-PA | 1..199 | 1..199 | 1063 | 100 | Plus |
Alg-2-PC | 178 | CG40410-PC | 18..172 | 39..193 | 337 | 41.9 | Plus |
CalpA-PC | 828 | CG7563-PC | 699..822 | 67..191 | 204 | 30.4 | Plus |
CalpA-PB | 828 | CG7563-PB | 699..822 | 67..191 | 204 | 30.4 | Plus |
CalpA-PD | 843 | CG7563-PD | 714..837 | 67..191 | 204 | 30.4 | Plus |