Clone Sequence Records
BO06444.3prime Sequence
856 bp (723 high quality bases) assembled on 2005-12-03
> BO06444.3prime
ATGGTCTAGAAAGCTTGCCCTATGCAAACTTCCTTTAAAATCCGATAATT
CTGCCATCTTGGCGAGTATCCAGGGCACATAGGTGGGTACATCCATGTAG
TAGGCCTTCTGACCAGCACCGCAGTTTTGGCTTCCAGTGCTGACCACACC
AAATTGTACGGTTCGAGCCTTGCCAAACAACGTGGTCTTCCATATGAGCG
GTCCACCGGAGTCCCCAGTGCACGTGTCCACATAATCTCCATTGGCGCAA
AGGAAGGAAGTATCCCTGCCGTCGGTGCACTTCTCAGTGTTTATATGGAC
CTCCATTGTACTGTTGGCGAAGCGCCGACTTTCCGTTCTCCCCCAGCCCA
CAGCCATGTAGGATTGTCCCAGCTGCAAGGTAAACGCCAAGAGTTCATCC
GTCAGGGGTAGACATATGGGTCGTATGTGATCTTTAAAGACCACTTTCTT
GTTTAGTTTTATCAGAGCAATATCATACCCGGGATAGAAGAGGTTAAACT
CCTCGTGAAGAATCCACTTGTCGATGGTAAACTCCTCCACGGGCAGTGCG
CAAACCCGTTGATAATTGTAGGTGACGCAGTCACTTGTGGAACTAATGTC
GAGCTCTCCCAGCCACACTCTTATCTCCTTAGATCGGGGACACATTTTGA
AGCAGTGCGCGGCAGTCAAAACAAAGAGTTCTGAGAGAAGAGAGCCTCCA
CAGCGGCACATCTCTATATCACCGGAAATGTGGAGAAAAGCCATCCAAGG
CTGGGACAACAGCGAAGATTTCCTGCCGCCGGTGATCCGCCGTCGAAGCC
TTTGGGCGGGATCAGATTCGATAGGACACCGCAATCCTGTTGTGTCAACT
GTTCGT
BO06444.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1773-PA | 954 | CG1773-RA | 159..951 | 811..19 | 3965 | 100 | Minus |
CG30002-PA | 612 | CG30002-RA | 1..305 | 645..341 | 1100 | 94.4 | Minus |
CG30002-PA | 612 | CG30002-RA | 328..581 | 318..65 | 920 | 94.4 | Minus |
CG1773-PA | 954 | CG1773-RA | 113..158 | 856..811 | 230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1773-RA | 1123 | CG1773-RA | 138..976 | 856..19 | 4170 | 99.9 | Minus |
CG30002-RB | 1572 | CG30002-RB | 145..959 | 847..35 | 3005 | 91.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:12:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9707019..9707433 | 433..19 | 2075 | 100 | Minus |
2R | 25286936 | 2R | 9705135..9705535 | 433..33 | 1480 | 91.3 | Minus |
2R | 25286936 | 2R | 9706755..9706948 | 625..432 | 970 | 100 | Minus |
2R | 25286936 | 2R | 9706404..9706583 | 856..678 | 850 | 99.4 | Minus |
2R | 25286936 | 2R | 9704871..9705064 | 625..432 | 835 | 95.4 | Minus |
2R | 25286936 | 2R | 9704528..9704698 | 847..678 | 415 | 84.2 | Minus |
2R | 25286936 | 2R | 9704755..9704807 | 677..625 | 265 | 100 | Minus |
2R | 25286936 | 2R | 9706640..9706692 | 677..625 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:12:25 has no hits.
BO06444.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:48 Download gff for
BO06444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-PA | 113..954 | 15..856 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:32 Download gff for
BO06444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-PA | 113..954 | 15..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:15 Download gff for
BO06444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 138..979 | 15..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:15:18 Download gff for
BO06444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 138..979 | 15..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:15:18 Download gff for
BO06444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9706404..9706583 | 678..856 | 99 | -> | Minus |
2R | 9706640..9706691 | 626..677 | 100 | -> | Minus |
2R | 9706755..9706948 | 432..625 | 100 | -> | Minus |
2R | 9707021..9707436 | 15..431 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:15 Download gff for
BO06444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5593909..5594088 | 678..856 | 99 | -> | Minus |
arm_2R | 5594145..5594196 | 626..677 | 100 | -> | Minus |
arm_2R | 5594260..5594453 | 432..625 | 100 | -> | Minus |
arm_2R | 5594526..5594941 | 15..431 | 99 | | Minus |
BO06444.5prime Sequence
835 bp (796 high quality bases) assembled on 2005-12-03
> BO06444.5prime
GAAGTTATCAGTCGACATGAACAGTCCTCTCGGGATCACTGCCCTAATTT
GGGGCATTCTCTGCCTTAGCTGTCCACCTTCTTCTCAAGCCGGAAGGGAA
GATTGGACACCACACGAGCTTCTGGCTTACGAACAGTTGACACAACAGGA
TTGCGGTGTCCTATCGAATCTGATTCCCGCCCAAAGGCTTCGACGGCGGA
TCACCGGCGGCAGGAAATCTTCGCTGTTGTCCCAGCCTTGGATGGCTTTT
CTCCACATTTCCGGTGATATAGAGATGTGCCGCTGTGGAGGCTCTCTTCT
CTCAGAACTCTTTGTTTTGACTGCCGCGCACTGCTTCAAAATGTGTCCCC
GATCTAAGGAGATAAGAGTGTGGCTGGGAGAGCTCGACATTAGTTCCACA
AGTGACTGCGTCACCTACAATTATCAACGGGTTTGCGCACTGCCCGTGGA
GGAGTTTACCATCGACAAGTGGATTCTTCACGAGGAGTTTAACCTCTTCT
ATCCCGGGTATGATATTGCTCTGATAAAACTAAACAAGAAAGTGGTCTTT
AAAGATCACATACGACCCATATGTCTACCCCTGACGGATGAACTCTTGGC
GTTTACCTTGCAGCTGGGACAATCCTACATGGCTGTGGGCTGGGGGAGAA
CGGAAAGTCGGCGCTTCGCCAACAGTACAATGGAGGTCCATATAAACACT
GAGAAGTGCACCGACGGCAGGGATACTTCCTTCCTTTGCGCCAATGGAGA
TTATGTGGACACGTGCACTGGGGACTCCGGTGGACCGCTCATATGGAAGA
ACACGTTGTTTGGCAAGGCTCGAACCGTACAATTT
BO06444.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1773-PA | 954 | CG1773-RA | 1..819 | 17..835 | 4070 | 99.8 | Plus |
CG30002-PA | 612 | CG30002-RA | 1..305 | 341..645 | 1100 | 94.4 | Plus |
CG30002-PA | 612 | CG30002-RA | 328..495 | 668..835 | 515 | 92.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1773-RA | 1123 | CG1773-RA | 25..844 | 16..835 | 4085 | 99.9 | Plus |
CG30002-RB | 1572 | CG30002-RB | 23..842 | 16..835 | 2855 | 89.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9706291..9706583 | 16..308 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 9707019..9707301 | 553..835 | 1400 | 99.6 | Plus |
2R | 25286936 | 2R | 9705135..9705417 | 553..835 | 995 | 90.1 | Plus |
2R | 25286936 | 2R | 9706755..9706948 | 361..554 | 970 | 100 | Plus |
2R | 25286936 | 2R | 9704871..9705064 | 361..554 | 835 | 95.4 | Plus |
2R | 25286936 | 2R | 9704406..9704698 | 16..308 | 775 | 84.3 | Plus |
2R | 25286936 | 2R | 9704755..9704807 | 309..361 | 265 | 100 | Plus |
2R | 25286936 | 2R | 9706640..9706692 | 309..361 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:49:51 has no hits.
BO06444.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:49 Download gff for
BO06444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-PA | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:33 Download gff for
BO06444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-PA | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:04 Download gff for
BO06444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 25..844 | 16..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:24 Download gff for
BO06444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 25..844 | 16..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:24 Download gff for
BO06444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9706291..9706583 | 16..308 | 100 | -> | Plus |
2R | 9706640..9706691 | 309..360 | 100 | -> | Plus |
2R | 9706755..9706948 | 361..554 | 100 | -> | Plus |
2R | 9707021..9707301 | 555..835 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:04 Download gff for
BO06444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5593796..5594088 | 16..308 | 100 | -> | Plus |
arm_2R | 5594145..5594196 | 309..360 | 100 | -> | Plus |
arm_2R | 5594260..5594453 | 361..554 | 100 | -> | Plus |
arm_2R | 5594526..5594806 | 555..835 | 99 | | Plus |
BO06444.complete Sequence
985 bp (985 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630403
> BO06444.complete
GAAGTTATCAGTCGACATGAACAGTCCTCTCGGGATCACTGCCCTAATTT
GGGGCATTCTCTGCCTTAGCTGTCCACCTTCTTCTCAAGCCGGAAGGGAA
GATTGGACACCACACGAGCTTCTGGCTTACGAACAGTTGACACAACAGGA
TTGCGGTGTCCTATCGAATCTGATTCCCGCCCAAAGGCTTCGACGGCGGA
TCACCGGCGGCAGGAAATCTTCGCTGTTGTCCCAGCCTTGGATGGCTTTT
CTCCACATTTCCGGTGATATAGAGATGTGCCGCTGTGGAGGCTCTCTTCT
CTCAGAACTCTTTGTTTTGACTGCCGCGCACTGCTTCAAAATGTGTCCCC
GATCTAAGGAGATAAGAGTGTGGCTGGGAGAGCTCGACATTAGTTCCACA
AGTGACTGCGTCACCTACAATTATCAACGGGTTTGCGCACTGCCCGTGGA
GGAGTTTACCATCGACAAGTGGATTCTTCACGAGGAGTTTAACCTCTTCT
ATCCCGGGTATGATATTGCTCTGATAAAACTAAACAAGAAAGTGGTCTTT
AAAGATCACATACGACCCATATGTCTACCCCTGACGGATGAACTCTTGGC
GTTTACCTTGCAGCTGGGACAATCCTACATGGCTGTGGGCTGGGGGAGAA
CGGAAAGTCGGCGCTTCGCCAACAGTACAATGGAGGTCCATATAAACACT
GAGAAGTGCACCGACGGCAGGGATACTTCCTTCCTTTGCGCCAATGGAGA
TTATGTGGACACGTGCACTGGGGACTCCGGTGGACCGCTCATATGGAAGA
CCACGTTGTTTGGCAAGGCTCGAACCGTACAATTTGGTGTGGTCAGCACT
GGAAGCCAAAACTGCGGTGCTGGTCAGAAGGCCTACTACATGGATGTACC
CACCTATGTGCCCTGGATACTCGCCAAGATGGCAGAATTATCGGATTTTA
AAGGAAGTTTGCATAGGGCAAGCTTTCTAGACCAT
BO06444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1773-RA | 954 | CG1773-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
CG30002-RB | 936 | CG30002-PB | 1..930 | 17..946 | 3330 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1773-RA | 1123 | CG1773-RA | 25..976 | 16..967 | 4760 | 100 | Plus |
CG30002-RB | 1572 | CG30002-RB | 23..960 | 16..953 | 3340 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9707019..9707433 | 553..967 | 2075 | 100 | Plus |
2R | 25286936 | 2R | 9705135..9705535 | 553..953 | 1480 | 91.3 | Plus |
2R | 25286936 | 2R | 9706291..9706583 | 16..308 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 9706755..9706948 | 361..554 | 970 | 100 | Plus |
2R | 25286936 | 2R | 9704871..9705064 | 361..554 | 835 | 95.4 | Plus |
2R | 25286936 | 2R | 9704406..9704698 | 16..308 | 775 | 84.3 | Plus |
2R | 25286936 | 2R | 9704755..9704807 | 309..361 | 265 | 100 | Plus |
2R | 25286936 | 2R | 9706640..9706692 | 309..361 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:29:12 has no hits.
BO06444.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:33 Download gff for
BO06444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 1..954 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:30 Download gff for
BO06444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 2..962 | 12..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:11 Download gff for
BO06444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 26..976 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:33 Download gff for
BO06444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 2..962 | 12..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:20 Download gff for
BO06444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1773-RA | 26..976 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:20 Download gff for
BO06444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9706292..9706583 | 17..308 | 100 | -> | Plus |
2R | 9706640..9706691 | 309..360 | 100 | -> | Plus |
2R | 9706755..9706948 | 361..554 | 100 | -> | Plus |
2R | 9707021..9707433 | 555..969 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:11 Download gff for
BO06444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5593797..5594088 | 17..308 | 100 | -> | Plus |
arm_2R | 5594145..5594196 | 309..360 | 100 | -> | Plus |
arm_2R | 5594260..5594453 | 361..554 | 100 | -> | Plus |
arm_2R | 5594526..5594938 | 555..969 | 99 | | Plus |
BO06444.pep Sequence
Translation from 16 to 985
> BO06444.pep
MNSPLGITALIWGILCLSCPPSSQAGREDWTPHELLAYEQLTQQDCGVLS
NLIPAQRLRRRITGGRKSSLLSQPWMAFLHISGDIEMCRCGGSLLSELFV
LTAAHCFKMCPRSKEIRVWLGELDISSTSDCVTYNYQRVCALPVEEFTID
KWILHEEFNLFYPGYDIALIKLNKKVVFKDHIRPICLPLTDELLAFTLQL
GQSYMAVGWGRTESRRFANSTMEVHINTEKCTDGRDTSFLCANGDYVDTC
TGDSGGPLIWKTTLFGKARTVQFGVVSTGSQNCGAGQKAYYMDVPTYVPW
ILAKMAELSDFKGSLHRASFLDH
BO06444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1773-PA | 317 | CG1773-PA | 1..317 | 1..317 | 1709 | 100 | Plus |
CG30002-PB | 311 | CG30002-PB | 1..310 | 1..310 | 1475 | 86.5 | Plus |
grass-PA | 335 | CG5896-PA | 73..331 | 58..306 | 386 | 37.6 | Plus |
grass-PB | 377 | CG5896-PB | 115..373 | 58..306 | 386 | 37.6 | Plus |
CG30090-PA | 291 | CG30090-PA | 8..273 | 7..301 | 364 | 35.3 | Plus |