Clone BO06444 Report

Search the DGRC for BO06444

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG1773-RA
Protein status:BO06444.pep: validated full length
Sequenced Size:985

Clone Sequence Records

BO06444.3prime Sequence

856 bp (723 high quality bases) assembled on 2005-12-03

> BO06444.3prime
ATGGTCTAGAAAGCTTGCCCTATGCAAACTTCCTTTAAAATCCGATAATT
CTGCCATCTTGGCGAGTATCCAGGGCACATAGGTGGGTACATCCATGTAG
TAGGCCTTCTGACCAGCACCGCAGTTTTGGCTTCCAGTGCTGACCACACC
AAATTGTACGGTTCGAGCCTTGCCAAACAACGTGGTCTTCCATATGAGCG
GTCCACCGGAGTCCCCAGTGCACGTGTCCACATAATCTCCATTGGCGCAA
AGGAAGGAAGTATCCCTGCCGTCGGTGCACTTCTCAGTGTTTATATGGAC
CTCCATTGTACTGTTGGCGAAGCGCCGACTTTCCGTTCTCCCCCAGCCCA
CAGCCATGTAGGATTGTCCCAGCTGCAAGGTAAACGCCAAGAGTTCATCC
GTCAGGGGTAGACATATGGGTCGTATGTGATCTTTAAAGACCACTTTCTT
GTTTAGTTTTATCAGAGCAATATCATACCCGGGATAGAAGAGGTTAAACT
CCTCGTGAAGAATCCACTTGTCGATGGTAAACTCCTCCACGGGCAGTGCG
CAAACCCGTTGATAATTGTAGGTGACGCAGTCACTTGTGGAACTAATGTC
GAGCTCTCCCAGCCACACTCTTATCTCCTTAGATCGGGGACACATTTTGA
AGCAGTGCGCGGCAGTCAAAACAAAGAGTTCTGAGAGAAGAGAGCCTCCA
CAGCGGCACATCTCTATATCACCGGAAATGTGGAGAAAAGCCATCCAAGG
CTGGGACAACAGCGAAGATTTCCTGCCGCCGGTGATCCGCCGTCGAAGCC
TTTGGGCGGGATCAGATTCGATAGGACACCGCAATCCTGTTGTGTCAACT
GTTCGT

BO06444.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1773-PA 954 CG1773-RA 159..951 811..19 3965 100 Minus
CG30002-PA 612 CG30002-RA 1..305 645..341 1100 94.4 Minus
CG30002-PA 612 CG30002-RA 328..581 318..65 920 94.4 Minus
CG1773-PA 954 CG1773-RA 113..158 856..811 230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1773-RA 1123 CG1773-RA 138..976 856..19 4170 99.9 Minus
CG30002-RB 1572 CG30002-RB 145..959 847..35 3005 91.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9707019..9707433 433..19 2075 100 Minus
2R 25286936 2R 9705135..9705535 433..33 1480 91.3 Minus
2R 25286936 2R 9706755..9706948 625..432 970 100 Minus
2R 25286936 2R 9706404..9706583 856..678 850 99.4 Minus
2R 25286936 2R 9704871..9705064 625..432 835 95.4 Minus
2R 25286936 2R 9704528..9704698 847..678 415 84.2 Minus
2R 25286936 2R 9704755..9704807 677..625 265 100 Minus
2R 25286936 2R 9706640..9706692 677..625 265 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:12:25 has no hits.

BO06444.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:48 Download gff for BO06444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-PA 113..954 15..856 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:32 Download gff for BO06444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-PA 113..954 15..856 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:15 Download gff for BO06444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 138..979 15..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:15:18 Download gff for BO06444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 138..979 15..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:15:18 Download gff for BO06444.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9706404..9706583 678..856 99 -> Minus
2R 9706640..9706691 626..677 100 -> Minus
2R 9706755..9706948 432..625 100 -> Minus
2R 9707021..9707436 15..431 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:15 Download gff for BO06444.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5593909..5594088 678..856 99 -> Minus
arm_2R 5594145..5594196 626..677 100 -> Minus
arm_2R 5594260..5594453 432..625 100 -> Minus
arm_2R 5594526..5594941 15..431 99   Minus

BO06444.5prime Sequence

835 bp (796 high quality bases) assembled on 2005-12-03

> BO06444.5prime
GAAGTTATCAGTCGACATGAACAGTCCTCTCGGGATCACTGCCCTAATTT
GGGGCATTCTCTGCCTTAGCTGTCCACCTTCTTCTCAAGCCGGAAGGGAA
GATTGGACACCACACGAGCTTCTGGCTTACGAACAGTTGACACAACAGGA
TTGCGGTGTCCTATCGAATCTGATTCCCGCCCAAAGGCTTCGACGGCGGA
TCACCGGCGGCAGGAAATCTTCGCTGTTGTCCCAGCCTTGGATGGCTTTT
CTCCACATTTCCGGTGATATAGAGATGTGCCGCTGTGGAGGCTCTCTTCT
CTCAGAACTCTTTGTTTTGACTGCCGCGCACTGCTTCAAAATGTGTCCCC
GATCTAAGGAGATAAGAGTGTGGCTGGGAGAGCTCGACATTAGTTCCACA
AGTGACTGCGTCACCTACAATTATCAACGGGTTTGCGCACTGCCCGTGGA
GGAGTTTACCATCGACAAGTGGATTCTTCACGAGGAGTTTAACCTCTTCT
ATCCCGGGTATGATATTGCTCTGATAAAACTAAACAAGAAAGTGGTCTTT
AAAGATCACATACGACCCATATGTCTACCCCTGACGGATGAACTCTTGGC
GTTTACCTTGCAGCTGGGACAATCCTACATGGCTGTGGGCTGGGGGAGAA
CGGAAAGTCGGCGCTTCGCCAACAGTACAATGGAGGTCCATATAAACACT
GAGAAGTGCACCGACGGCAGGGATACTTCCTTCCTTTGCGCCAATGGAGA
TTATGTGGACACGTGCACTGGGGACTCCGGTGGACCGCTCATATGGAAGA
ACACGTTGTTTGGCAAGGCTCGAACCGTACAATTT

BO06444.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1773-PA 954 CG1773-RA 1..819 17..835 4070 99.8 Plus
CG30002-PA 612 CG30002-RA 1..305 341..645 1100 94.4 Plus
CG30002-PA 612 CG30002-RA 328..495 668..835 515 92.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1773-RA 1123 CG1773-RA 25..844 16..835 4085 99.9 Plus
CG30002-RB 1572 CG30002-RB 23..842 16..835 2855 89.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9706291..9706583 16..308 1465 100 Plus
2R 25286936 2R 9707019..9707301 553..835 1400 99.6 Plus
2R 25286936 2R 9705135..9705417 553..835 995 90.1 Plus
2R 25286936 2R 9706755..9706948 361..554 970 100 Plus
2R 25286936 2R 9704871..9705064 361..554 835 95.4 Plus
2R 25286936 2R 9704406..9704698 16..308 775 84.3 Plus
2R 25286936 2R 9704755..9704807 309..361 265 100 Plus
2R 25286936 2R 9706640..9706692 309..361 265 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:49:51 has no hits.

BO06444.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:49 Download gff for BO06444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-PA 1..819 17..835 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:33 Download gff for BO06444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-PA 1..819 17..835 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:04 Download gff for BO06444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 25..844 16..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:24 Download gff for BO06444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 25..844 16..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:24 Download gff for BO06444.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9706291..9706583 16..308 100 -> Plus
2R 9706640..9706691 309..360 100 -> Plus
2R 9706755..9706948 361..554 100 -> Plus
2R 9707021..9707301 555..835 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:04 Download gff for BO06444.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5593796..5594088 16..308 100 -> Plus
arm_2R 5594145..5594196 309..360 100 -> Plus
arm_2R 5594260..5594453 361..554 100 -> Plus
arm_2R 5594526..5594806 555..835 99   Plus

BO06444.complete Sequence

985 bp (985 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630403

> BO06444.complete
GAAGTTATCAGTCGACATGAACAGTCCTCTCGGGATCACTGCCCTAATTT
GGGGCATTCTCTGCCTTAGCTGTCCACCTTCTTCTCAAGCCGGAAGGGAA
GATTGGACACCACACGAGCTTCTGGCTTACGAACAGTTGACACAACAGGA
TTGCGGTGTCCTATCGAATCTGATTCCCGCCCAAAGGCTTCGACGGCGGA
TCACCGGCGGCAGGAAATCTTCGCTGTTGTCCCAGCCTTGGATGGCTTTT
CTCCACATTTCCGGTGATATAGAGATGTGCCGCTGTGGAGGCTCTCTTCT
CTCAGAACTCTTTGTTTTGACTGCCGCGCACTGCTTCAAAATGTGTCCCC
GATCTAAGGAGATAAGAGTGTGGCTGGGAGAGCTCGACATTAGTTCCACA
AGTGACTGCGTCACCTACAATTATCAACGGGTTTGCGCACTGCCCGTGGA
GGAGTTTACCATCGACAAGTGGATTCTTCACGAGGAGTTTAACCTCTTCT
ATCCCGGGTATGATATTGCTCTGATAAAACTAAACAAGAAAGTGGTCTTT
AAAGATCACATACGACCCATATGTCTACCCCTGACGGATGAACTCTTGGC
GTTTACCTTGCAGCTGGGACAATCCTACATGGCTGTGGGCTGGGGGAGAA
CGGAAAGTCGGCGCTTCGCCAACAGTACAATGGAGGTCCATATAAACACT
GAGAAGTGCACCGACGGCAGGGATACTTCCTTCCTTTGCGCCAATGGAGA
TTATGTGGACACGTGCACTGGGGACTCCGGTGGACCGCTCATATGGAAGA
CCACGTTGTTTGGCAAGGCTCGAACCGTACAATTTGGTGTGGTCAGCACT
GGAAGCCAAAACTGCGGTGCTGGTCAGAAGGCCTACTACATGGATGTACC
CACCTATGTGCCCTGGATACTCGCCAAGATGGCAGAATTATCGGATTTTA
AAGGAAGTTTGCATAGGGCAAGCTTTCTAGACCAT

BO06444.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1773-RA 954 CG1773-PA 1..951 17..967 4755 100 Plus
CG30002-RB 936 CG30002-PB 1..930 17..946 3330 90.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1773-RA 1123 CG1773-RA 25..976 16..967 4760 100 Plus
CG30002-RB 1572 CG30002-RB 23..960 16..953 3340 90.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9707019..9707433 553..967 2075 100 Plus
2R 25286936 2R 9705135..9705535 553..953 1480 91.3 Plus
2R 25286936 2R 9706291..9706583 16..308 1465 100 Plus
2R 25286936 2R 9706755..9706948 361..554 970 100 Plus
2R 25286936 2R 9704871..9705064 361..554 835 95.4 Plus
2R 25286936 2R 9704406..9704698 16..308 775 84.3 Plus
2R 25286936 2R 9704755..9704807 309..361 265 100 Plus
2R 25286936 2R 9706640..9706692 309..361 265 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:29:12 has no hits.

BO06444.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:33 Download gff for BO06444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 1..954 17..971 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:30 Download gff for BO06444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 2..962 12..971 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:11 Download gff for BO06444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 26..976 17..969 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:33 Download gff for BO06444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 2..962 12..971 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:20 Download gff for BO06444.complete
Subject Subject Range Query Range Percent Splice Strand
CG1773-RA 26..976 17..969 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:20 Download gff for BO06444.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9706292..9706583 17..308 100 -> Plus
2R 9706640..9706691 309..360 100 -> Plus
2R 9706755..9706948 361..554 100 -> Plus
2R 9707021..9707433 555..969 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:11 Download gff for BO06444.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5593797..5594088 17..308 100 -> Plus
arm_2R 5594145..5594196 309..360 100 -> Plus
arm_2R 5594260..5594453 361..554 100 -> Plus
arm_2R 5594526..5594938 555..969 99   Plus

BO06444.pep Sequence

Translation from 16 to 985

> BO06444.pep
MNSPLGITALIWGILCLSCPPSSQAGREDWTPHELLAYEQLTQQDCGVLS
NLIPAQRLRRRITGGRKSSLLSQPWMAFLHISGDIEMCRCGGSLLSELFV
LTAAHCFKMCPRSKEIRVWLGELDISSTSDCVTYNYQRVCALPVEEFTID
KWILHEEFNLFYPGYDIALIKLNKKVVFKDHIRPICLPLTDELLAFTLQL
GQSYMAVGWGRTESRRFANSTMEVHINTEKCTDGRDTSFLCANGDYVDTC
TGDSGGPLIWKTTLFGKARTVQFGVVSTGSQNCGAGQKAYYMDVPTYVPW
ILAKMAELSDFKGSLHRASFLDH

BO06444.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1773-PA 317 CG1773-PA 1..317 1..317 1709 100 Plus
CG30002-PB 311 CG30002-PB 1..310 1..310 1475 86.5 Plus
grass-PA 335 CG5896-PA 73..331 58..306 386 37.6 Plus
grass-PB 377 CG5896-PB 115..373 58..306 386 37.6 Plus
CG30090-PA 291 CG30090-PA 8..273 7..301 364 35.3 Plus