Clone BO06450 Report

Search the DGRC for BO06450

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptl(1)G0004-RA
Protein status:BO06450.pep: validated full length
Sequenced Size:754

Clone Sequence Records

BO06450.3prime Sequence

752 bp (751 high quality bases) assembled on 2005-12-03

> BO06450.3prime
ATGGTCTAGAAAGCTTGCCATGCGCTCCGAGAGGCGCGAGGCGACTGCCC
GCAGGTTGCCATACACCTTGCTGGGCGGCGAGCCGAGGATTAGGTTGCAG
ACGGCCCGGCGCGCAAGCTGAATGTTCTGGTAGCTGCCCAGGATGTGGAT
CTTGCTATCGGCTAGCACGATGCGGGTCTTGGTCACGTTCTCGATGGTGA
ATTTGGTGCGGCCGCCCTTGCCGGCGAGGCGGCCGATGGCGCGAGACTGG
TGGTCGCCGCGCAGCGTCTTCACGTCCTTGATTTCGAACGACTCGACGAA
CAGGTCCTCCAGACGCAGCAGGGCCAGGGCGTCGTCCACCTCGAAGCCGC
AGAGAAAGGCGCGCACGAAGTCGGCGCCGCGCTGCAGGTTGGCTATGTCC
GGCGTCTCGGGGCCCACACGCAGCTCCACCTGGCGCGCCTTCATGTTGAA
GCGGATCTGCAGCTTCATGTGCTCCACCACGGGCGTAAAGATCTTCATCC
AGTGCTCCTTGAGCGAGGAGTACCTGTGTGGCGGCACGGATACCTTGCGC
AGCTCGCTTCTGGCCCGCTTTGCCTTGGGCGGCGCCGATGCTCGCGAAGA
TCCCAGCACCTGGCCCTCAATGCCGGTCGCCTCGTCCACCTGCATCTCCA
CGTCCTGCTGCCCGCCTCCGCTGGCTCCGCGCTTCGTCGCTCTCTTCGCC
GGCTCGAATGCGTCTGCTCTGATGTTCTCTGCCTCCATGTCGACTGATAA
CT

BO06450.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11738-PA 723 l(1)G0004-RA 1..720 738..19 3600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0004-RA 955 CG11738-RA 89..809 739..19 3605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20391535..20392255 739..19 3605 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:12:33 has no hits.

BO06450.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:55 Download gff for BO06450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11738-PA 1..723 16..738 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:43 Download gff for BO06450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11738-PA 1..723 16..738 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:18 Download gff for BO06450.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0004-RA 89..809 19..739 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:15:31 Download gff for BO06450.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0004-RA 89..809 19..739 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:15:31 Download gff for BO06450.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20391535..20392255 19..739 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:18 Download gff for BO06450.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20262562..20263282 19..739 100   Minus

BO06450.5prime Sequence

752 bp (751 high quality bases) assembled on 2005-12-03

> BO06450.5prime
GAAGTTATCAGTCGACATGGAGGCAGAGAACATCAGAGCAGACGCATTCG
AGCCGGCGAAGAGAGCGACGAAGCGCGGAGCCAGCGGAGGCGGGCAGCAG
GACGTGGAGATGCAGGTGGACGAGGCGACCGGCATTGAGGGCCAGGTGCT
GGGATCTTCGCGAGCATCGGCGCCGCCCAAGGCAAAGCGGGCCAGAAGCG
AGCTGCGCAAGGTATCCGTGCCGCCACACAGGTACTCCTCGCTCAAGGAG
CACTGGATGAAGATCTTTACGCCCGTGGTGGAGCACATGAAGCTGCAGAT
CCGCTTCAACATGAAGGCGCGCCAGGTGGAGCTGCGTGTGGGCCCCGAGA
CGCCGGACATAGCCAACCTGCAGCGCGGCGCCGACTTCGTGCGCGCCTTT
CTCTGCGGCTTCGAGGTGGACGACGCCCTGGCCCTGCTGCGTCTGGAGGA
CCTGTTCGTCGAGTCGTTCGAAATCAAGGACGTGAAGACGCTGCGCGGCG
ACCACCAGTCTCGCGCCATCGGCCGCCTCGCCGGCAAGGGCGGCCGCACC
AAATTCACCATCGAGAACGTGACCAAGACCCGCATCGTGCTAGCCGATAG
CAAGATCCACATCCTGGGCAGCTACCAGAACATTCAGCTTGCGCGCCGGG
CCGTCTGCAACCTAATCCTCGGCTCGCCGCCCAGCAAGGTGTATGGCAAC
CTGCGGGCAGTCGCCTCGCGCCTCTCGGAGCGCATGGCAAGCTTTCTAGA
CC

BO06450.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11738-PA 723 l(1)G0004-RA 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0004-RA 955 CG11738-RA 89..809 16..736 3605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20391535..20392255 16..736 3605 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:12:36 has no hits.

BO06450.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:56 Download gff for BO06450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11738-PA 1..723 17..739 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:45 Download gff for BO06450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11738-PA 1..723 17..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:19 Download gff for BO06450.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0004-RA 89..809 16..736 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:15:37 Download gff for BO06450.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0004-RA 89..809 16..736 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:15:37 Download gff for BO06450.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20391535..20392255 16..736 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:19 Download gff for BO06450.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20262562..20263282 16..736 100   Plus

BO06450.complete Sequence

754 bp (754 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630404

> BO06450.complete
GAAGTTATCAGTCGACATGGAGGCAGAGAACATCAGAGCAGACGCATTCG
AGCCGGCGAAGAGAGCGACGAAGCGCGGAGCCAGCGGAGGCGGGCAGCAG
GACGTGGAGATGCAGGTGGACGAGGCGACCGGCATTGAGGGCCAGGTGCT
GGGATCTTCGCGAGCATCGGCGCCGCCCAAGGCAAAGCGGGCCAGAAGCG
AGCTGCGCAAGGTATCCGTGCCGCCACACAGGTACTCCTCGCTCAAGGAG
CACTGGATGAAGATCTTTACGCCCGTGGTGGAGCACATGAAGCTGCAGAT
CCGCTTCAACATGAAGGCGCGCCAGGTGGAGCTGCGTGTGGGCCCCGAGA
CGCCGGACATAGCCAACCTGCAGCGCGGCGCCGACTTCGTGCGCGCCTTT
CTCTGCGGCTTCGAGGTGGACGACGCCCTGGCCCTGCTGCGTCTGGAGGA
CCTGTTCGTCGAGTCGTTCGAAATCAAGGACGTGAAGACGCTGCGCGGCG
ACCACCAGTCTCGCGCCATCGGCCGCCTCGCCGGCAAGGGCGGCCGCACC
AAATTCACCATCGAGAACGTGACCAAGACCCGCATCGTGCTAGCCGATAG
CAAGATCCACATCCTGGGCAGCTACCAGAACATTCAGCTTGCGCGCCGGG
CCGTCTGCAACCTAATCCTCGGCTCGCCGCCCAGCAAGGTGTATGGCAAC
CTGCGGGCAGTCGCCTCGCGCCTCTCGGAGCGCATGGCAAGCTTTCTAGA
CCAT

BO06450.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0004-RA 723 CG11738-PA 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0004-RA 955 CG11738-RA 89..809 16..736 3605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20391535..20392255 16..736 3605 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:29:49 has no hits.

BO06450.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:34 Download gff for BO06450.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0004-RA 1..723 17..739 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:32 Download gff for BO06450.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0004-RA 85..805 16..736 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:19 Download gff for BO06450.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0004-RA 90..809 17..738 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:34 Download gff for BO06450.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0004-RA 85..805 16..736 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:46 Download gff for BO06450.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0004-RA 90..809 17..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:46 Download gff for BO06450.complete
Subject Subject Range Query Range Percent Splice Strand
X 20391536..20392255 17..738 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:19 Download gff for BO06450.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20262563..20263282 17..738 99   Plus

BO06450.pep Sequence

Translation from 16 to 754

> BO06450.pep
MEAENIRADAFEPAKRATKRGASGGGQQDVEMQVDEATGIEGQVLGSSRA
SAPPKAKRARSELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMK
ARQVELRVGPETPDIANLQRGADFVRAFLCGFEVDDALALLRLEDLFVES
FEIKDVKTLRGDHQSRAIGRLAGKGGRTKFTIENVTKTRIVLADSKIHIL
GSYQNIQLARRAVCNLILGSPPSKVYGNLRAVASRLSERMASFLDH

BO06450.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0004-PA 240 CG11738-PA 1..240 1..240 1208 100 Plus