Clone Sequence Records
BO06451.3prime Sequence
707 bp (706 high quality bases) assembled on 2005-12-03
> BO06451.3prime
ATGGTCTAGAAAGCTTGCCTTGGGCTCCAGGTGCGCCGTCTCTAGGTTCT
TCATCTTGGGATAGCTAATGGAGCGGCTGTCCAGCTTGGACTGGGCCCAC
AAGATCAGCTTGAGCAGGAACATCATTTTGGGCGTGGAGTCCTCGCTCTG
CTCGCAGCGCAGGATGGCCGAGTTGAGCTCGCTAGCGATCTTCTGGCGGT
ACGACTGCTCCAGCAGGTCGGCGAAGGGGCTCTCCTGCGGCTTCTCGAAG
GCGAGCAGGGCCAGGGTGCGCTCCAGCTCAAACATGGCCTCCTCGCCGGA
CTCGGACAGCTTGCTTTGGGCAAAGGACAGGGCCTCCTCCACCTTGCCGG
CGCGTATCAGCTCGATGAGCTGCAGCTGCTGCAGGTGGAAGAACAGATAG
CGATCGCTGCCGAGCAGCTCAGGATGCAGCTGGTTCACCAGCTGGGTGGC
CTCCTCGATGCGGCCCGCCTGCACGGCTTCGCGGATGAGTATGCGCCCAT
CGAGGCTGCTCAGCTCCACGCTGGGCTCCAGATCCGCCTCGTGCTGGAAC
TTCTCGGCGGCCTCCTTGAAGCCCTCTGTGACCAAGTAGTTCATGATCAG
GCGATTCATGTCCGCCTGCTTGAAGGGAAACTGCTCCAGGCGCTGCAGCC
ACTCCTCCTTGATGATGGCCTCCGATTTCTCGTTGTAGCTCATGTCGACT
GATAACT
BO06451.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6617-PA | 678 | CG6617-RA | 1..675 | 693..19 | 3375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6617-RA | 989 | CG6617-RA | 175..849 | 693..19 | 3375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18649536..18650097 | 19..580 | 2810 | 100 | Plus |
| X | 23542271 | X | 18650153..18650270 | 576..693 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:24:29 has no hits.
BO06451.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:57 Download gff for
BO06451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6617-PA | 1..678 | 18..693 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:46 Download gff for
BO06451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6617-PA | 1..678 | 18..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:09 Download gff for
BO06451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6617-RA | 170..849 | 19..700 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:49:11 Download gff for
BO06451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6617-RA | 170..849 | 19..700 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:11 Download gff for
BO06451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18649536..18650092 | 19..575 | 100 | <- | Plus |
| X | 18650153..18650275 | 576..700 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:09 Download gff for
BO06451.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18543569..18544125 | 19..575 | 100 | <- | Plus |
| arm_X | 18544186..18544308 | 576..700 | 96 | | Plus |
BO06451.5prime Sequence
707 bp (706 high quality bases) assembled on 2005-12-03
> BO06451.5prime
GAAGTTATCAGTCGACATGAGCTACAACGAGAAATCGGAGGCCATCATCA
AGGAGGAGTGGCTGCAGCGCCTGGAGCAGTTTCCCTTCAAGCAGGCGGAC
ATGAATCGCCTGATCATGAACTACTTGGTCACAGAGGGCTTCAAGGAGGC
CGCCGAGAAGTTCCAGCACGAGGCGGATCTGGAGCCCAGCGTGGAGCTGA
GCAGCCTCGATGGGCGCATACTCATCCGCGAAGCCGTGCAGGCGGGCCGC
ATCGAGGAGGCCACCCAGCTGGTGAACCAGCTGCATCCTGAGCTGCTCGG
CAGCGATCGCTATCTGTTCTTCCACCTGCAGCAGCTGCAGCTCATCGAGC
TGATACGCGCCGGCAAGGTGGAGGAGGCCCTGTCCTTTGCCCAAAGCAAG
CTGTCCGAGTCCGGCGAGGAGGCCATGTTTGAGCTGGAGCGCACCCTGGC
CCTGCTCGCCTTCGAGAAGCCGCAGGAGAGCCCCTTCGCCGACCTGCTGG
AGCAGTCGTACCGCCAGAAGATCGCTAGCGAGCTCAACTCGGCCATCCTG
CGCTGCGAGCAGAGCGAGGACTCCACGCCCAAAATGATGTTCCTGCTCAA
GCTGATCTTGTGGGCCCAGTCCAAGCTGGACAGCCGCTCCATTAGCTATC
CCAAGATGAAGAACCTAGAGACGGCGCACCTGGAGCCCAAGGCAAGCTTT
CTAGACC
BO06451.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6617-PA | 678 | CG6617-RA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6617-RA | 989 | CG6617-RA | 175..849 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18649536..18650097 | 691..130 | 2810 | 100 | Minus |
| X | 23542271 | X | 18650153..18650270 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:25:55 has no hits.
BO06451.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:58 Download gff for
BO06451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6617-PA | 1..678 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:48 Download gff for
BO06451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6617-PA | 1..678 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:25 Download gff for
BO06451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6617-RA | 170..849 | 10..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:39 Download gff for
BO06451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6617-RA | 170..849 | 10..691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:39 Download gff for
BO06451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18649536..18650092 | 135..691 | 100 | <- | Minus |
| X | 18650153..18650275 | 10..134 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:25 Download gff for
BO06451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18543569..18544125 | 135..691 | 100 | <- | Minus |
| arm_X | 18544186..18544308 | 10..134 | 96 | | Minus |
BO06451.complete Sequence
709 bp (709 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630405
> BO06451.complete
GAAGTTATCAGTCGACATGAGCTACAACGAGAAATCGGAGGCCATCATCA
AGGAGGAGTGGCTGCAGCGCCTGGAGCAGTTTCCCTTCAAGCAGGCGGAC
ATGAATCGCCTGATCATGAACTACTTGGTCACAGAGGGCTTCAAGGAGGC
CGCCGAGAAGTTCCAGCACGAGGCGGATCTGGAGCCCAGCGTGGAGCTGA
GCAGCCTCGATGGGCGCATACTCATCCGCGAAGCCGTGCAGGCGGGCCGC
ATCGAGGAGGCCACCCAGCTGGTGAACCAGCTGCATCCTGAGCTGCTCGG
CAGCGATCGCTATCTGTTCTTCCACCTGCAGCAGCTGCAGCTCATCGAGC
TGATACGCGCCGGCAAGGTGGAGGAGGCCCTGTCCTTTGCCCAAAGCAAG
CTGTCCGAGTCCGGCGAGGAGGCCATGTTTGAGCTGGAGCGCACCCTGGC
CCTGCTCGCCTTCGAGAAGCCGCAGGAGAGCCCCTTCGCCGACCTGCTGG
AGCAGTCGTACCGCCAGAAGATCGCTAGCGAGCTCAACTCGGCCATCCTG
CGCTGCGAGCAGAGCGAGGACTCCACGCCCAAAATGATGTTCCTGCTCAA
GCTGATCTTGTGGGCCCAGTCCAAGCTGGACAGCCGCTCCATTAGCTATC
CCAAGATGAAGAACCTAGAGACGGCGCACCTGGAGCCCAAGGCAAGCTTT
CTAGACCAT
BO06451.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6617-RA | 678 | CG6617-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6617-RA | 989 | CG6617-RA | 175..849 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18649536..18650097 | 691..130 | 2810 | 100 | Minus |
| X | 23542271 | X | 18650153..18650270 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:03:35 has no hits.
BO06451.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:36 Download gff for
BO06451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6617-RA | 1..678 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:34 Download gff for
BO06451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6617-RA | 166..845 | 10..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:59 Download gff for
BO06451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6617-RA | 175..849 | 17..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:36 Download gff for
BO06451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6617-RA | 166..845 | 10..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:30 Download gff for
BO06451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6617-RA | 175..849 | 17..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:30 Download gff for
BO06451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18649534..18650092 | 135..693 | 99 | <- | Minus |
| X | 18650153..18650270 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:59 Download gff for
BO06451.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18543567..18544125 | 135..693 | 99 | <- | Minus |
| arm_X | 18544186..18544303 | 17..134 | 100 | | Minus |
BO06451.pep Sequence
Translation from 16 to 709
> BO06451.pep
MSYNEKSEAIIKEEWLQRLEQFPFKQADMNRLIMNYLVTEGFKEAAEKFQ
HEADLEPSVELSSLDGRILIREAVQAGRIEEATQLVNQLHPELLGSDRYL
FFHLQQLQLIELIRAGKVEEALSFAQSKLSESGEEAMFELERTLALLAFE
KPQESPFADLLEQSYRQKIASELNSAILRCEQSEDSTPKMMFLLKLILWA
QSKLDSRSISYPKMKNLETAHLEPKASFLDH
BO06451.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6617-PA | 225 | CG6617-PA | 1..225 | 1..225 | 1119 | 100 | Plus |
| CG18467-PA | 237 | CG18467-PA | 10..230 | 15..228 | 505 | 44.4 | Plus |
