Clone BO06452 Report

Search the DGRC for BO06452

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG9666-RA
Protein status:BO06452.pep: validated full length
Sequenced Size:673

Clone Sequence Records

BO06452.3prime Sequence

671 bp (670 high quality bases) assembled on 2005-12-03

> BO06452.3prime
ATGGTCTAGAAAGCTTGCTTCCGTGCCGATTTCAAAGCGCCAGAAGTCCA
CCTCAATATCCTTCGACTTCTGCTTGTGAAACTTGTAGCTGGCGTCGATG
TTGTACCGGAGTTCGGCGACCACTGAGCCGCGGGCGCCCCATTCCAGTGC
CTTTTTCTGAATGTACGACCGTGTTGACGTCTTGTGTAGGGAGTAAACTG
CTCTGTTGGCCAACCGTAGGGCCACCTCCAGAAACCGCATGTCCATGCCG
GCATTGTGTTTCGTGCCGAATGGGGGATTCATCAGCACCGTGTCAAAGGA
CTTCTCCCACTTGCTGCCGATCAGCTGCAGCACATCCGCCCGCACGCAGT
CAACATTGGGTAGCTCCATCTCCACCACATTGCCCCTAAAGGTGTCCACG
GCATCGCCGTCCAGTTCGAAGCCCACCGTGAGCTGGGCGCCCAGCAGAGT
GGAAGCAATGCTGAGCATTCCGCAGCCGCAGCCCAAATCTCCCACCAGCT
TTCCCTCGATGTCCTCGTGCTGCGACTGCATGTGATGAGCCATGCACGCG
GCTATGTGCGGCGGAGTGGGGTACTGTTCCAACAGGATCTTGGGCTGCTC
GAAACCGTCAACGCCCTGCAGGTACTCCTCCAGTTTCCTCAGCTTCAACC
GGGCCATGTCGACTGATAACT

BO06452.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9666-PA 642 CG9666-RA 1..639 657..19 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG42374-RB 1635 CG42374-RB 903..1541 657..19 3195 100 Minus
CG42374-RA 1227 CG42374-RA 495..1133 657..19 3195 100 Minus
CG9666-RD 1635 CG9666-RD 903..1541 657..19 3195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19264956..19265445 657..168 2450 100 Minus
3L 28110227 3L 19266593..19266744 170..19 760 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:14:53 has no hits.

BO06452.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:59 Download gff for BO06452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9666-PA 1..642 18..657 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:49 Download gff for BO06452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9666-PA 1..642 18..657 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:00 Download gff for BO06452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42374-RA 489..1133 19..662 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:09 Download gff for BO06452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9666-RD 897..1541 19..662 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:09 Download gff for BO06452.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19264950..19265443 170..662 99 -> Minus
3L 19266594..19266744 19..169 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:00 Download gff for BO06452.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19258050..19258543 170..662 99 -> Minus
arm_3L 19259694..19259844 19..169 100   Minus

BO06452.5prime Sequence

671 bp (670 high quality bases) assembled on 2005-12-03

> BO06452.5prime
GAAGTTATCAGTCGACATGGCCCGGTTGAAGCTGAGGAAACTGGAGGAGT
ACCTGCAGGGCGTTGACGGTTTCGAGCAGCCCAAGATCCTGTTGGAACAG
TACCCCACTCCGCCGCACATAGCCGCGTGCATGGCTCATCACATGCAGTC
GCAGCACGAGGACATCGAGGGAAAGCTGGTGGGAGATTTGGGCTGCGGCT
GCGGAATGCTCAGCATTGCTTCCACTCTGCTGGGCGCCCAGCTCACGGTG
GGCTTCGAACTGGACGGCGATGCCGTGGACACCTTTAGGGGCAATGTGGT
GGAGATGGAGCTACCCAATGTTGACTGCGTGCGGGCGGATGTGCTGCAGC
TGATCGGCAGCAAGTGGGAGAAGTCCTTTGACACGGTGCTGATGAATCCC
CCATTCGGCACGAAACACAATGCCGGCATGGACATGCGGTTTCTGGAGGT
GGCCCTACGGTTGGCCAACAGAGCAGTTTACTCCCTACACAAGACGTCAA
CACGGTCGTACATTCAGAAAAAGGCACTGGAATGGGGCGCCCGCGGCTCA
GTGGTCGCCGAACTCCGGTACAACATCGACGCCAGCTACAAGTTTCACAA
GCAGAAGTCGAAGGATATTGAGGTGGACTTCTGGCGCTTTGAAATCGGCA
CGGAAGCAAGCTTTCTAGACC

BO06452.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9666-PA 642 CG9666-RA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG42374-RB 1635 CG42374-RB 903..1541 17..655 3195 100 Plus
CG42374-RA 1227 CG42374-RA 495..1133 17..655 3195 100 Plus
CG9666-RD 1635 CG9666-RD 903..1541 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19264956..19265445 17..506 2450 100 Plus
3L 28110227 3L 19266593..19266744 504..655 760 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:09:42 has no hits.

BO06452.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:00 Download gff for BO06452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9666-PA 1..642 17..656 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:51 Download gff for BO06452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9666-PA 1..642 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:13 Download gff for BO06452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42374-RA 489..1133 12..655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:34 Download gff for BO06452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9666-RD 897..1541 12..655 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:34 Download gff for BO06452.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19264950..19265443 12..504 99 -> Plus
3L 19266594..19266744 505..655 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:13 Download gff for BO06452.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19258050..19258543 12..504 99 -> Plus
arm_3L 19259694..19259844 505..655 100   Plus

BO06452.complete Sequence

673 bp (673 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630406

> BO06452.complete
GAAGTTATCAGTCGACATGGCCCGGTTGAAGCTGAGGAAACTGGAGGAGT
ACCTGCAGGGCGTTGACGGTTTCGAGCAGCCCAAGATCCTGTTGGAACAG
TACCCCACTCCGCCGCACATAGCCGCGTGCATGGCTCATCACATGCAGTC
GCAGCACGAGGACATCGAGGGAAAGCTGGTGGGAGATTTGGGCTGCGGCT
GCGGAATGCTCAGCATTGCTTCCACTCTGCTGGGCGCCCAGCTCACGGTG
GGCTTCGAACTGGACGGCGATGCCGTGGACACCTTTAGGGGCAATGTGGT
GGAGATGGAGCTACCCAATGTTGACTGCGTGCGGGCGGATGTGCTGCAGC
TGATCGGCAGCAAGTGGGAGAAGTCCTTTGACACGGTGCTGATGAATCCC
CCATTCGGCACGAAACACAATGCCGGCATGGACATGCGGTTTCTGGAGGT
GGCCCTACGGTTGGCCAACAGAGCAGTTTACTCCCTACACAAGACGTCAA
CACGGTCGTACATTCAGAAAAAGGCACTGGAATGGGGCGCCCGCGGCTCA
GTGGTCGCCGAACTCCGGTACAACATCGACGCCAGCTACAAGTTTCACAA
GCAGAAGTCGAAGGATATTGAGGTGGACTTCTGGCGCTTTGAAATCGGCA
CGGAAGCAAGCTTTCTAGACCAT

BO06452.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9666-RD 642 CG9666-PD 1..639 17..655 3195 100 Plus
CG9666-RA 642 CG9666-PA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG42374-RB 1635 CG42374-RB 903..1541 17..655 3195 100 Plus
CG42374-RA 1227 CG42374-RA 495..1133 17..655 3195 100 Plus
CG9666-RD 1635 CG9666-RD 903..1541 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19264956..19265445 17..506 2450 100 Plus
3L 28110227 3L 19266593..19266744 504..655 760 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:02:27 has no hits.

BO06452.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:37 Download gff for BO06452.complete
Subject Subject Range Query Range Percent Splice Strand
CG9666-RA 1..642 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:36 Download gff for BO06452.complete
Subject Subject Range Query Range Percent Splice Strand
CG42374-RA 894..1538 12..655 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:15 Download gff for BO06452.complete
Subject Subject Range Query Range Percent Splice Strand
CG42374-RA 495..1133 17..657 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:37 Download gff for BO06452.complete
Subject Subject Range Query Range Percent Splice Strand
CG9666-RA 894..1538 12..655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:20 Download gff for BO06452.complete
Subject Subject Range Query Range Percent Splice Strand
CG9666-RD 903..1541 17..657 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:20 Download gff for BO06452.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19266594..19266744 505..657 98   Plus
3L 19264956..19265443 17..504 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:15 Download gff for BO06452.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19259694..19259844 505..657 98   Plus
arm_3L 19258056..19258543 17..504 100 -> Plus

BO06452.pep Sequence

Translation from 16 to 673

> BO06452.pep
MARLKLRKLEEYLQGVDGFEQPKILLEQYPTPPHIAACMAHHMQSQHEDI
EGKLVGDLGCGCGMLSIASTLLGAQLTVGFELDGDAVDTFRGNVVEMELP
NVDCVRADVLQLIGSKWEKSFDTVLMNPPFGTKHNAGMDMRFLEVALRLA
NRAVYSLHKTSTRSYIQKKALEWGARGSVVAELRYNIDASYKFHKQKSKD
IEVDFWRFEIGTEASFLDH

BO06452.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9666-PD 213 CG9666-PD 1..213 1..213 1117 100 Plus
CG9666-PA 213 CG9666-PA 1..213 1..213 1117 100 Plus