Clone Sequence Records
BO06452.3prime Sequence
671 bp (670 high quality bases) assembled on 2005-12-03
> BO06452.3prime
ATGGTCTAGAAAGCTTGCTTCCGTGCCGATTTCAAAGCGCCAGAAGTCCA
CCTCAATATCCTTCGACTTCTGCTTGTGAAACTTGTAGCTGGCGTCGATG
TTGTACCGGAGTTCGGCGACCACTGAGCCGCGGGCGCCCCATTCCAGTGC
CTTTTTCTGAATGTACGACCGTGTTGACGTCTTGTGTAGGGAGTAAACTG
CTCTGTTGGCCAACCGTAGGGCCACCTCCAGAAACCGCATGTCCATGCCG
GCATTGTGTTTCGTGCCGAATGGGGGATTCATCAGCACCGTGTCAAAGGA
CTTCTCCCACTTGCTGCCGATCAGCTGCAGCACATCCGCCCGCACGCAGT
CAACATTGGGTAGCTCCATCTCCACCACATTGCCCCTAAAGGTGTCCACG
GCATCGCCGTCCAGTTCGAAGCCCACCGTGAGCTGGGCGCCCAGCAGAGT
GGAAGCAATGCTGAGCATTCCGCAGCCGCAGCCCAAATCTCCCACCAGCT
TTCCCTCGATGTCCTCGTGCTGCGACTGCATGTGATGAGCCATGCACGCG
GCTATGTGCGGCGGAGTGGGGTACTGTTCCAACAGGATCTTGGGCTGCTC
GAAACCGTCAACGCCCTGCAGGTACTCCTCCAGTTTCCTCAGCTTCAACC
GGGCCATGTCGACTGATAACT
BO06452.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9666-PA | 642 | CG9666-RA | 1..639 | 657..19 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42374-RB | 1635 | CG42374-RB | 903..1541 | 657..19 | 3195 | 100 | Minus |
CG42374-RA | 1227 | CG42374-RA | 495..1133 | 657..19 | 3195 | 100 | Minus |
CG9666-RD | 1635 | CG9666-RD | 903..1541 | 657..19 | 3195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19264956..19265445 | 657..168 | 2450 | 100 | Minus |
3L | 28110227 | 3L | 19266593..19266744 | 170..19 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:14:53 has no hits.
BO06452.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:49:59 Download gff for
BO06452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-PA | 1..642 | 18..657 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:49 Download gff for
BO06452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-PA | 1..642 | 18..657 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:00 Download gff for
BO06452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42374-RA | 489..1133 | 19..662 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:09 Download gff for
BO06452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-RD | 897..1541 | 19..662 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:09 Download gff for
BO06452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19264950..19265443 | 170..662 | 99 | -> | Minus |
3L | 19266594..19266744 | 19..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:00 Download gff for
BO06452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19258050..19258543 | 170..662 | 99 | -> | Minus |
arm_3L | 19259694..19259844 | 19..169 | 100 | | Minus |
BO06452.5prime Sequence
671 bp (670 high quality bases) assembled on 2005-12-03
> BO06452.5prime
GAAGTTATCAGTCGACATGGCCCGGTTGAAGCTGAGGAAACTGGAGGAGT
ACCTGCAGGGCGTTGACGGTTTCGAGCAGCCCAAGATCCTGTTGGAACAG
TACCCCACTCCGCCGCACATAGCCGCGTGCATGGCTCATCACATGCAGTC
GCAGCACGAGGACATCGAGGGAAAGCTGGTGGGAGATTTGGGCTGCGGCT
GCGGAATGCTCAGCATTGCTTCCACTCTGCTGGGCGCCCAGCTCACGGTG
GGCTTCGAACTGGACGGCGATGCCGTGGACACCTTTAGGGGCAATGTGGT
GGAGATGGAGCTACCCAATGTTGACTGCGTGCGGGCGGATGTGCTGCAGC
TGATCGGCAGCAAGTGGGAGAAGTCCTTTGACACGGTGCTGATGAATCCC
CCATTCGGCACGAAACACAATGCCGGCATGGACATGCGGTTTCTGGAGGT
GGCCCTACGGTTGGCCAACAGAGCAGTTTACTCCCTACACAAGACGTCAA
CACGGTCGTACATTCAGAAAAAGGCACTGGAATGGGGCGCCCGCGGCTCA
GTGGTCGCCGAACTCCGGTACAACATCGACGCCAGCTACAAGTTTCACAA
GCAGAAGTCGAAGGATATTGAGGTGGACTTCTGGCGCTTTGAAATCGGCA
CGGAAGCAAGCTTTCTAGACC
BO06452.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9666-PA | 642 | CG9666-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42374-RB | 1635 | CG42374-RB | 903..1541 | 17..655 | 3195 | 100 | Plus |
CG42374-RA | 1227 | CG42374-RA | 495..1133 | 17..655 | 3195 | 100 | Plus |
CG9666-RD | 1635 | CG9666-RD | 903..1541 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19264956..19265445 | 17..506 | 2450 | 100 | Plus |
3L | 28110227 | 3L | 19266593..19266744 | 504..655 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:09:42 has no hits.
BO06452.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:00 Download gff for
BO06452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-PA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:22:51 Download gff for
BO06452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-PA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:13 Download gff for
BO06452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42374-RA | 489..1133 | 12..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:34 Download gff for
BO06452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-RD | 897..1541 | 12..655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:34 Download gff for
BO06452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19264950..19265443 | 12..504 | 99 | -> | Plus |
3L | 19266594..19266744 | 505..655 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:13 Download gff for
BO06452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19258050..19258543 | 12..504 | 99 | -> | Plus |
arm_3L | 19259694..19259844 | 505..655 | 100 | | Plus |
BO06452.complete Sequence
673 bp (673 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630406
> BO06452.complete
GAAGTTATCAGTCGACATGGCCCGGTTGAAGCTGAGGAAACTGGAGGAGT
ACCTGCAGGGCGTTGACGGTTTCGAGCAGCCCAAGATCCTGTTGGAACAG
TACCCCACTCCGCCGCACATAGCCGCGTGCATGGCTCATCACATGCAGTC
GCAGCACGAGGACATCGAGGGAAAGCTGGTGGGAGATTTGGGCTGCGGCT
GCGGAATGCTCAGCATTGCTTCCACTCTGCTGGGCGCCCAGCTCACGGTG
GGCTTCGAACTGGACGGCGATGCCGTGGACACCTTTAGGGGCAATGTGGT
GGAGATGGAGCTACCCAATGTTGACTGCGTGCGGGCGGATGTGCTGCAGC
TGATCGGCAGCAAGTGGGAGAAGTCCTTTGACACGGTGCTGATGAATCCC
CCATTCGGCACGAAACACAATGCCGGCATGGACATGCGGTTTCTGGAGGT
GGCCCTACGGTTGGCCAACAGAGCAGTTTACTCCCTACACAAGACGTCAA
CACGGTCGTACATTCAGAAAAAGGCACTGGAATGGGGCGCCCGCGGCTCA
GTGGTCGCCGAACTCCGGTACAACATCGACGCCAGCTACAAGTTTCACAA
GCAGAAGTCGAAGGATATTGAGGTGGACTTCTGGCGCTTTGAAATCGGCA
CGGAAGCAAGCTTTCTAGACCAT
BO06452.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9666-RD | 642 | CG9666-PD | 1..639 | 17..655 | 3195 | 100 | Plus |
CG9666-RA | 642 | CG9666-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42374-RB | 1635 | CG42374-RB | 903..1541 | 17..655 | 3195 | 100 | Plus |
CG42374-RA | 1227 | CG42374-RA | 495..1133 | 17..655 | 3195 | 100 | Plus |
CG9666-RD | 1635 | CG9666-RD | 903..1541 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19264956..19265445 | 17..506 | 2450 | 100 | Plus |
3L | 28110227 | 3L | 19266593..19266744 | 504..655 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:02:27 has no hits.
BO06452.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:37 Download gff for
BO06452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-RA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:36 Download gff for
BO06452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42374-RA | 894..1538 | 12..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:15 Download gff for
BO06452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42374-RA | 495..1133 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:37 Download gff for
BO06452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-RA | 894..1538 | 12..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:20 Download gff for
BO06452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-RD | 903..1541 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:20 Download gff for
BO06452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19266594..19266744 | 505..657 | 98 | | Plus |
3L | 19264956..19265443 | 17..504 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:15 Download gff for
BO06452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19259694..19259844 | 505..657 | 98 | | Plus |
arm_3L | 19258056..19258543 | 17..504 | 100 | -> | Plus |
BO06452.pep Sequence
Translation from 16 to 673
> BO06452.pep
MARLKLRKLEEYLQGVDGFEQPKILLEQYPTPPHIAACMAHHMQSQHEDI
EGKLVGDLGCGCGMLSIASTLLGAQLTVGFELDGDAVDTFRGNVVEMELP
NVDCVRADVLQLIGSKWEKSFDTVLMNPPFGTKHNAGMDMRFLEVALRLA
NRAVYSLHKTSTRSYIQKKALEWGARGSVVAELRYNIDASYKFHKQKSKD
IEVDFWRFEIGTEASFLDH
BO06452.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9666-PD | 213 | CG9666-PD | 1..213 | 1..213 | 1117 | 100 | Plus |
CG9666-PA | 213 | CG9666-PA | 1..213 | 1..213 | 1117 | 100 | Plus |