Clone Sequence Records
BO06457.3prime Sequence
861 bp (805 high quality bases) assembled on 2005-12-03
> BO06457.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCCGCAGCTCCTTGCAGAAGGTCTCGG
CAGCAGCAGCCTCGCGAGACACGGGCACATTTTTCTGAGCCTCATCCTCC
TCGAGTTTTTTGACACCCTGACGCACAACGCGTTCAATGTCGTCCAGCAA
TCCGGAGGCTCCGAAACGGAACCTCTCGGGACGCAACCAGCGGATGCCAA
GAGTTTCGTTGACCAACGTCATCCAGGCGATCGCATCTCGTACAGTCTTT
ACTCCTCCGGCTGGCTTAAGGCCCACAATCTGGCACGTGCGTCGTTTGAA
TTCCTGAATGGCAAATATCATGACCAGGCCAACGGGCAGGGTGGCGTTGA
CTGTCTCCTTTCCCGTTGAGGTCTTGATAAAATCCGCTCCGGCCATCATG
CAAACCATGGCTGCTTTGTAAACATTATCCATGGTGCCCAGCTCCCCGAT
GGCCAGAATTGTTTTTAGGTGAGCCCTTTGTCCACAGGCACTGCGCATAA
GGACCACCTCGTTGTACATGGCCTCCCAGTCGCCAACGAGGGCCAACTGG
CGATTGATCACAATGTCGATCTCTGTGGCTCCAGCAAGAATGGCGTGGCT
GATCTCCTGCAGGCGGGTCTGCAGGCCGTACTGGCCCGTGGGAAATCCCG
TGGCCACCGCTGCAATAGCCACCTTATCCAGTTTGTCGTACTGTTGGATA
GCTAAATAGGCGTCCTTTACCCTGGCGGGATAAACGCAAACGGCGGCCGT
GTGCATCTCTGGGATGAGAGCCCGGTCGAAGAACTTGTCAAAGAACTGCG
GCTCGAAGGGATAGCAGGCGCGTAGGCATAGTCTCCGCACATTGGCAGCC
GTATCATCGCC
BO06457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8525-PA | 1044 | CG8525-RA | 199..1041 | 861..19 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8525-RD | 1269 | CG8525-RD | 318..1160 | 861..19 | 4215 | 100 | Minus |
CG8525-RA | 1378 | CG8525-RA | 427..1269 | 861..19 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12425962..12426401 | 861..422 | 2200 | 100 | Minus |
2R | 25286936 | 2R | 12426462..12426866 | 423..19 | 2025 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:09:32 has no hits.
BO06457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:08 Download gff for
BO06457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-PA | 199..1044 | 18..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:01 Download gff for
BO06457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-PA | 199..1044 | 18..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:03 Download gff for
BO06457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 427..1269 | 19..861 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:25 Download gff for
BO06457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 427..1269 | 19..861 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:25 Download gff for
BO06457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12425962..12426399 | 424..861 | 100 | -> | Minus |
2R | 12426462..12426866 | 19..423 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:03 Download gff for
BO06457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8313467..8313904 | 424..861 | 100 | -> | Minus |
arm_2R | 8313967..8314371 | 19..423 | 100 | | Minus |
BO06457.5prime Sequence
856 bp (776 high quality bases) assembled on 2005-12-03
> BO06457.5prime
GAAGTTATCAGTCGACATGAGCAGCATGGATGTGAAGGAATTGGAAGTAA
ACAAAACCCTGCCCTATGATCCCTCCCTGCTTAAGGTAAACATCTCGCTG
CGGCAGGTCGAGGAGATCGCTTTGACGGTGTCCCAGCGATGCCATGTCAC
CGGAGCCAACGAAATCGCCTGGGCGCTGAGGGCTCTGATGCTGACAGATC
TTACCACCTTGGCGGGCGATGATACGGCTGCCAATGTGCGGAGACTATGC
CTACGCGCCTGCTATCCCTTCGAGCCGCAGTTCTTTGACAAGTTCTTCGA
CCGGGCTCTCATCCCAGAGATGCACACGGCCGCCGTTTGCGTTTATCCCG
CCAGGGTAAAGGACGCCTATTTAGCTATCCAACAGTACGACAAACTGGAT
AAGGTGGCTATTGCAGCGGTGGCCACGGGATTTCCCACGGGCCAGTACGG
CCTGCAGACCCGCCTGCAGGAGATCAGCCACGCCATTCTTGCTGGAGCCA
CAGAGATCGACATTGTGATCAATCGCCAGTTGGCCCTCGTTGGCGACTGG
GAGGCCATGTACAACGAGGTGGTCCTTATGCGCAGTGCCTGTGGACAAAG
GGCTCACCTAAAAACAATTCTGGCCATCGGGGAGCTGGGCACCATGGATA
ATGTTTACAAAGCAGCCATGGTTTGCATGATGGCCGGAGCGGATTTTATC
AAGACCTCAACGGGAAAGGAGACAGTCAACGCCACCCTGCCCGTTGGCCT
GGTCATGATATTTGCCATTCAGGAATTCAAACGACGCACGTGCCAGATTG
TGGGCCTTAAGCCAGCCGGAGGAGTAAAGACTGTACGAGATGCGATCGCC
TGGATG
BO06457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8525-PA | 1044 | CG8525-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8525-RD | 1269 | CG8525-RD | 120..959 | 17..856 | 4200 | 100 | Plus |
CG8525-RA | 1378 | CG8525-RA | 229..1068 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12425815..12426401 | 68..654 | 2935 | 100 | Plus |
2R | 25286936 | 2R | 12426462..12426665 | 653..856 | 1020 | 100 | Plus |
2R | 25286936 | 2R | 12425711..12425762 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:12:57 has no hits.
BO06457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:09 Download gff for
BO06457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:03 Download gff for
BO06457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:22 Download gff for
BO06457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 224..1068 | 9..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:16:18 Download gff for
BO06457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 224..1068 | 9..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:16:18 Download gff for
BO06457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12425706..12425762 | 9..68 | 95 | -> | Plus |
2R | 12425816..12426399 | 69..652 | 100 | -> | Plus |
2R | 12426462..12426665 | 653..856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:22 Download gff for
BO06457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8313967..8314170 | 653..856 | 100 | | Plus |
arm_2R | 8313211..8313267 | 9..68 | 95 | -> | Plus |
arm_2R | 8313321..8313904 | 69..652 | 100 | -> | Plus |
BO06457.complete Sequence
1075 bp (1075 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630407
> BO06457.complete
GAAGTTATCAGTCGACATGAGCAGCATGGATGTGAAGGAATTGGAAGTAA
ACAAAACCCTGCCCTATGATCCCTCCCTGCTTAAGGTAAACATCTCGCTG
CGGCAGGTCGAGGAGATCGCTTTGACGGTGTCCCAGCGATGCCATGTCAC
CGGAGCCAACGAAATCGCCTGGGCGCTGAGGGCTCTGATGCTGACAGATC
TTACCACCTTGGCGGGCGATGATACGGCTGCCAATGTGCGGAGACTATGC
CTACGCGCCTGCTATCCCTTCGAGCCGCAGTTCTTTGACAAGTTCTTCGA
CCGGGCTCTCATCCCAGAGATGCACACGGCCGCCGTTTGCGTTTATCCCG
CCAGGGTAAAGGACGCCTATTTAGCTATCCAACAGTACGACAAACTGGAT
AAGGTGGCTATTGCAGCGGTGGCCACGGGATTTCCCACGGGCCAGTACGG
CCTGCAGACCCGCCTGCAGGAGATCAGCCACGCCATTCTTGCTGGAGCCA
CAGAGATCGACATTGTGATCAATCGCCAGTTGGCCCTCGTTGGCGACTGG
GAGGCCATGTACAACGAGGTGGTCCTTATGCGCAGTGCCTGTGGACAAAG
GGCTCACCTAAAAACAATTCTGGCCATCGGGGAGCTGGGCACCATGGATA
ATGTTTACAAAGCAGCCATGGTTTGCATGATGGCCGGAGCGGATTTTATC
AAGACCTCAACGGGAAAGGAGACAGTCAACGCCACCCTGCCCGTTGGCCT
GGTCATGATATTTGCCATTCAGGAATTCAAACGACGCACGTGCCAGATTG
TGGGCCTTAAGCCAGCCGGAGGAGTAAAGACTGTACGAGATGCGATCGCC
TGGATGACGTTGGTCAACGAAACTCTTGGCATCCGCTGGTTGCGTCCCGA
GAGGTTCCGTTTCGGAGCCTCCGGATTGCTGGACGACATTGAACGCGTTG
TGCGTCAGGGTGTCAAAAAACTCGAGGAGGATGAGGCTCAGAAAAATGTG
CCCGTGTCTCGCGAGGCTGCTGCTGCCGAGACCTTCTGCAAGGAGCTGCG
GAAGAAGGCAAGCTTTCTAGACCAT
BO06457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8525-RD | 1044 | CG8525-PD | 1..1041 | 17..1057 | 5205 | 100 | Plus |
CG8525-RA | 1044 | CG8525-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8525-RD | 1269 | CG8525-RD | 120..1160 | 17..1057 | 5205 | 100 | Plus |
CG8525-RA | 1378 | CG8525-RA | 229..1269 | 17..1057 | 5205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12425815..12426401 | 68..654 | 2935 | 100 | Plus |
2R | 25286936 | 2R | 12426462..12426866 | 653..1057 | 2025 | 100 | Plus |
2R | 25286936 | 2R | 12425711..12425762 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:07:44 has no hits.
BO06457.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:40 Download gff for
BO06457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 1..1044 | 17..1058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:39 Download gff for
BO06457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 249..1294 | 9..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:19 Download gff for
BO06457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 229..1269 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:40 Download gff for
BO06457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 249..1294 | 9..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:46 Download gff for
BO06457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 229..1269 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:46 Download gff for
BO06457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12425711..12425762 | 17..68 | 100 | -> | Plus |
2R | 12425816..12426399 | 69..652 | 100 | -> | Plus |
2R | 12426462..12426866 | 653..1059 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:19 Download gff for
BO06457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8313216..8313267 | 17..68 | 100 | -> | Plus |
arm_2R | 8313321..8313904 | 69..652 | 100 | -> | Plus |
arm_2R | 8313967..8314371 | 653..1059 | 99 | | Plus |
BO06457.pep Sequence
Translation from 16 to 1075
> BO06457.pep
MSSMDVKELEVNKTLPYDPSLLKVNISLRQVEEIALTVSQRCHVTGANEI
AWALRALMLTDLTTLAGDDTAANVRRLCLRACYPFEPQFFDKFFDRALIP
EMHTAAVCVYPARVKDAYLAIQQYDKLDKVAIAAVATGFPTGQYGLQTRL
QEISHAILAGATEIDIVINRQLALVGDWEAMYNEVVLMRSACGQRAHLKT
ILAIGELGTMDNVYKAAMVCMMAGADFIKTSTGKETVNATLPVGLVMIFA
IQEFKRRTCQIVGLKPAGGVKTVRDAIAWMTLVNETLGIRWLRPERFRFG
ASGLLDDIERVVRQGVKKLEEDEAQKNVPVSREAAAAETFCKELRKKASF
LDH
BO06457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:24:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8525-PD | 347 | CG8525-PD | 1..347 | 1..347 | 1764 | 100 | Plus |
CG8525-PA | 347 | CG8525-PA | 1..347 | 1..347 | 1764 | 100 | Plus |