Clone Sequence Records
BO06458.3prime Sequence
896 bp (737 high quality bases) assembled on 2005-12-03
> BO06458.3prime
ATGGTCTAGAAAGCTTGCAATGATGACTGCATATTGGTTTGAGTTACGCG
GTTGGATGAGCGTGGCATACTTCTCCTTCAGTTCGACCAAAGCCCTCTGG
AAGTTCTCCACGCTGCTCTCGAGCTGGTTGGGACTGAGCTGCTGGACGGA
CTGGCCCTTGAGTAGACCATCGGTGGGTCGCTCTCCCAGGAGGAGAATCC
TTCTCCAATCGCTGGCATCGGAGCTACCTCGCAGGAAGTCCTTGCGATTG
CCAACCGCAAACACAGTTTCCTCCATATTCTCGGGCAAAATTGTGGGCTG
CTGGGCTCCCAGATCGCCGGGCGTGGGTTGAGTTGGTGGCACTTGGACTG
CTGGTGGTGTGATCCCCGAGAGAGATGACGATGTGGGTTGCGGTGGAGGA
ATGGGAGCACCGGAACCTTGGTTCACCGGTGTATCGAACAGTTCACTGGG
CAGATTCTGCGGTCGATCGATCTGCACCACCTGGCCATCGGGTGAAATGT
GGAAGAACTGAGCGCGACCAGCTAATCCCGTTCCTGGTCCTCCTGGAATC
ACTATAATGTTGCCCACAGCGGTGGTCAATGCAGAGGCTCCACCAAATCC
GCCACCACCTGGGGTGGAAATGAAAGGAGGGACTGGAACTCCCGGTGGCG
GAAAGGATCTCAAAGGTGGAGGAGCTGGGCATGGGAAACAATATCCAGGA
GGACCAGGCGGTCCTGGTAAGCCTCTAGGCCCCTGGATGAAAGGCAGATT
TGGGGGGTAAGGACCTGTGGGTGGATAGCCCCAGTAGCCAGAACCACTGC
CAGAGAGACCGTTCTGATTGCCAGGAGGTCCAGGCGGACCTGGAGGTCCT
CGGTCCCCCTGTGGACCAGGATCACAAGAGCATTTCACCACGAAGC
BO06458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10591-PA | 939 | CG10591-RA | 65..936 | 890..19 | 4335 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:57:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10591-RA | 1075 | CG10591-RA | 93..971 | 896..19 | 4355 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5598661..5599532 | 19..890 | 4345 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:57:03 has no hits.
BO06458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:10 Download gff for
BO06458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10591-PA | 58..939 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:04 Download gff for
BO06458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10591-PA | 58..939 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:54 Download gff for
BO06458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10591-RA | 93..976 | 14..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:37 Download gff for
BO06458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10591-RA | 93..976 | 14..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:37 Download gff for
BO06458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5598656..5599539 | 14..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:54 Download gff for
BO06458.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5591756..5592639 | 14..896 | 99 | | Plus |
BO06458.5prime Sequence
869 bp (762 high quality bases) assembled on 2005-12-03
> BO06458.5prime
GAAGTTATCAGTCGACATGAGTTTTTTGGGACTCTTGGCTTTTCTGGTTG
CTGGTCTTTGCTCCACCGCCCAGGCTTCGTTGGTGAAATGCTCTTGTGAT
CCTGGTCCACAGGGGGAACGAGGACCTCCAGGTCCGCCTGGACCTCCTGG
CAATCAGAACGGTCTCTCTGGCAGTGGTTCTGGCTACTGGGGCTATCCAC
CCACAGGTCCTTACCCCCCAAATCTGCCTTTCATCCAGGGGCCTAGAGGC
TTACCAGGACCGCCTGGTCCTCCTGGATATTGTTTCCCATGCCCAGCTCC
TCCACCTTTGAGATCCTTTCCGCCACCGGGAGTTCCAGTCCCTCCTTTCA
TTTCCACCCCAGGTGGTGGCGGATTTGGTGGAGCCTCTGCATTGACCACC
GCTGTGGGCAACATTATAGTGATTCCAGGAGGACCAGGAACGGGATTAGC
TGGTCGCGCTCAGTTCTTCCACATTTCACCCGATGGCCAGGTGGTGCAGA
TCGATCGACCGCAGAATCTGCCCAGTGAACTGTTCGATACACCGGTGAAC
CAAGGTTCCGGTGCTCCCATTCCTCCACCGCAACCCACATCGTCATCTCT
CTCGGGGATCACACCACCAGCAGTCCAAGTGCCACCAACTCAACCCACGC
CCGGCGATCTGGGAGCCCAGCAGCCCACAATTTTGCCCGAGAATATGGAG
GAAACTGTGTTTGCGGTTGGCAATCGCAAGGACTTCCTGCGAGGTAGCTC
CGATGCCAGCGATTGGAGAAGGATTCTCCTCCTGGGAGAGCGACCCACCG
ATGGTCTACTCAAGGGCCAGTCCCGTCAGCAGCTCAGTCCCAACCAGCTC
GAGAGCAGCGTGGAGAACT
BO06458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10591-PA | 939 | CG10591-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
| CG10591-PA | 939 | CG10591-RA | 811..853 | 827..869 | 215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10591-RA | 1075 | CG10591-RA | 35..888 | 16..869 | 4225 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5598744..5599560 | 869..53 | 4040 | 99.6 | Minus |
| 3L | 28110227 | 3L | 5599619..5599658 | 55..16 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:15:09 has no hits.
BO06458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:11 Download gff for
BO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10591-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:05 Download gff for
BO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10591-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:16:36 Download gff for
BO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10591-RA | 28..888 | 10..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:12:16 Download gff for
BO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10591-RA | 28..888 | 10..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:12:16 Download gff for
BO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5598744..5599559 | 54..869 | 99 | <- | Minus |
| 3L | 5599621..5599665 | 10..53 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:16:36 Download gff for
BO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5591844..5592659 | 54..869 | 99 | <- | Minus |
| arm_3L | 5592721..5592765 | 10..53 | 93 | | Minus |
BO06458.complete Sequence
970 bp (970 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630408
> BO06458.complete
GAAGTTATCAGTCGACATGAGTTTTTTGGGACTCTTGGCTTTTCTGGTTG
CTGGTCTTTGCTCCACCGCCCAGGCTTCGTTGGTGAAATGCTCTTGTGAT
CCTGGTCCACAGGGGGAACGAGGACCTCCAGGTCCGCCTGGACCTCCTGG
CAATCAGAACGGTCTCTCTGGCAGTGGTTCTGGCTACTGGGGCTATCCAC
CCACAGGTCCTTACCCCCCAAATCTGCCTTTCATCCAGGGGCCTAGAGGC
TTACCAGGACCGCCTGGTCCTCCTGGATATTGTTTCCCATGCCCAGCTCC
TCCACCTTTGAGATCCTTTCCGCCACCGGGAGTTCCAGTCCCTCCTTTCA
TTTCCACCCCAGGTGGTGGCGGATTTGGTGGAGCCTCTGCATTGACCACC
GCTGTGGGCAACATTATAGTGATTCCAGGAGGACCAGGAACGGGATTAGC
TGGTCGCGCTCAGTTCTTCCACATTTCACCCGATGGCCAGGTGGTGCAGA
TCGATCGACCGCAGAATCTGCCCAGTGAACTGTTCGATACACCGGTGAAC
CAAGGTTCCGGTGCTCCCATTCCTCCACCGCAACCCACATCGTCATCTCT
CTCGGGGATCACACCACCAGCAGTCCAAGTGCCACCAACTCAACCCACGC
CCGGCGATCTGGGAGCCCAGCAGCCCACAATTTTGCCCGAGAATATGGAG
GAAACTGTGTTTGCGGTTGGCAATCGCAAGGACTTCCTGCGAGGTAGCTC
CGATGCCAGCGATTGGAGAAGGATTCTCCTCCTGGGAGAGCGACCCACCG
ATGGTCTACTCAAGGGCCAGTCCGTCCAGCAGCTCAGTCCCAACCAGCTC
GAGAGCAGCGTGGAGAACTTCCAGAGGGCTTTGGTCGAACTGAAGGAGAA
GTATGCCACGCTCATCCAACCGCGTAACTCAAACCAATATGCAGTCATCA
TTGCAAGCTTTCTAGACCAT
BO06458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10591-RA | 939 | CG10591-PA | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10591-RA | 1075 | CG10591-RA | 35..971 | 16..952 | 4685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5598661..5599560 | 952..53 | 4500 | 100 | Minus |
| 3L | 28110227 | 3L | 5599619..5599658 | 55..16 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:38:22 has no hits.
BO06458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:18 Download gff for
BO06458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10591-RA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:12 Download gff for
BO06458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10591-RA | 25..973 | 10..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:32 Download gff for
BO06458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10591-RA | 36..971 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:18 Download gff for
BO06458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10591-RA | 25..973 | 10..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:26 Download gff for
BO06458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10591-RA | 36..971 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:26 Download gff for
BO06458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5598658..5599559 | 54..954 | 99 | <- | Minus |
| 3L | 5599621..5599657 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:32 Download gff for
BO06458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5591758..5592659 | 54..954 | 99 | <- | Minus |
| arm_3L | 5592721..5592757 | 17..53 | 100 | | Minus |
BO06458.pep Sequence
Translation from 16 to 970
> BO06458.pep
MSFLGLLAFLVAGLCSTAQASLVKCSCDPGPQGERGPPGPPGPPGNQNGL
SGSGSGYWGYPPTGPYPPNLPFIQGPRGLPGPPGPPGYCFPCPAPPPLRS
FPPPGVPVPPFISTPGGGGFGGASALTTAVGNIIVIPGGPGTGLAGRAQF
FHISPDGQVVQIDRPQNLPSELFDTPVNQGSGAPIPPPQPTSSSLSGITP
PAVQVPPTQPTPGDLGAQQPTILPENMEETVFAVGNRKDFLRGSSDASDW
RRILLLGERPTDGLLKGQSVQQLSPNQLESSVENFQRALVELKEKYATLI
QPRNSNQYAVIIASFLDH
BO06458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10591-PA | 312 | CG10591-PA | 1..312 | 1..312 | 1690 | 100 | Plus |
| CG10625-PJ | 752 | CG10625-PJ | 131..300 | 30..222 | 200 | 32 | Plus |
| CG10625-PI | 766 | CG10625-PI | 131..300 | 30..222 | 200 | 32 | Plus |
| CG10625-PH | 1180 | CG10625-PH | 545..714 | 30..222 | 200 | 32 | Plus |
| CG10625-PD | 268 | CG10625-PD | 134..222 | 30..116 | 184 | 48.3 | Plus |
| CG10625-PJ | 752 | CG10625-PJ | 159..373 | 29..232 | 174 | 31.3 | Plus |
| CG10625-PI | 766 | CG10625-PI | 159..373 | 29..232 | 174 | 31.3 | Plus |
| CG10625-PH | 1180 | CG10625-PH | 573..787 | 29..232 | 174 | 31.3 | Plus |
