Clone Sequence Records
BO06459.3prime Sequence
923 bp (835 high quality bases) assembled on 2005-12-03
> BO06459.3prime
ATGGTCTAGAAAGCTTGCGGCTTTGAAGGTGTCCTTTTCCTTGCGCAGCT
TGCCCATGGTGACGACGGGATCGGTGGCTCCGCCAGCGTGCTTCTGCACG
GTGGCTTCGTGAACGCGCATAAAGGGGTTCCAGGACTTCTCCTCGCCAAT
GGTGGAGGGCACAGTGGGATCCTGGGAGGCGCGCCGGTGCTTGGCCCACT
CGATCCTCTGCTGGATGACCTCGTTGTCGGGCTCGACGTGACGGGCGAAG
CTCATGTTCTGCAGCGTGTACTCGTGGCCACAGAACACCTTTGTGGCGTC
CGGCAAGGCGGAGAGCTTTGTGCACAGCGCCTCGTACATTTCCTCGGGAG
TGCCCTCGAAGAAGCGGCCGCATCCGCCCTGGAAGAGGGTGTCGCCGGTG
AAGACGGCTCCCTCGCCGCTGCCCTGCTGCGCGGTGATGTGGTAGCAGAT
GTGGCCGGTAGTGTGGCACGGCGTGGACAAGCACTTGACATGCAGACCAC
CAATGGTGAAGGTGTCGTCCTGCTGAACCTTTTTGTTCAATGCCCCGATG
CGGTCATCGCCGCCATACACGTCCAGCTCCTTCTCCCACAGCTTGAGCAG
CTTTTCATTGCCACCGGCGTGGTCCCAGTGATGGTGCGTGGTCAGCACCT
TGCTGAGGGTCAGCTGCTGCTCCTGCACCGTCTTAATGACCAGCTCCGGC
TCCACGGGATCCACCACGGCCGCCTCGCGCGTCTTCGTGTCTACAATCAG
ATACATATAGTTATCCTGCAGGGCCGGCAGGATCTTGATCTCCATGCCCT
CCAGCTGCACGTCCTCCAATGTGCTGTGCATGCCTCTGAAGCCGACTTTT
CGTAGTTTTTGCACTCGGAAGTAGGTGGCCGTCAACTGGGTCTCCACGGA
GGTGGCCACGCTGCGCCAGGCGG
BO06459.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4365-PA | 918 | CG4365-RA | 11..915 | 923..19 | 4525 | 100 | Minus |
CG4365-PC | 1047 | CG4365-RC | 200..1044 | 863..19 | 4225 | 100 | Minus |
CG4365-PB | 816 | CG4365-RB | 1..813 | 831..19 | 4065 | 100 | Minus |
CG4365-PC | 1047 | CG4365-RC | 11..70 | 923..864 | 300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4365-RA | 1092 | CG4365-RA | 94..998 | 923..19 | 4525 | 100 | Minus |
CG4365-RC | 1231 | CG4365-RC | 308..1152 | 863..19 | 4225 | 100 | Minus |
CG4365-RB | 1013 | CG4365-RB | 75..919 | 863..19 | 4225 | 100 | Minus |
CG4365-RC | 1231 | CG4365-RC | 119..178 | 923..864 | 300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20799141..20799987 | 865..19 | 4235 | 100 | Minus |
3L | 28110227 | 3L | 20798800..20798859 | 923..864 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:58:40 has no hits.
BO06459.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:12 Download gff for
BO06459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-PA | 11..918 | 16..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:07 Download gff for
BO06459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-PA | 11..918 | 16..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:36 Download gff for
BO06459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 94..1004 | 12..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:30:17 Download gff for
BO06459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 94..1004 | 12..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:30:17 Download gff for
BO06459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20798800..20798859 | 864..923 | 100 | -> | Minus |
3L | 20799143..20799993 | 12..863 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:36 Download gff for
BO06459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20791900..20791959 | 864..923 | 100 | -> | Minus |
arm_3L | 20792243..20793093 | 12..863 | 99 | | Minus |
BO06459.5prime Sequence
927 bp (808 high quality bases) assembled on 2005-12-03
> BO06459.5prime
GAAGTTATCAGTCGACATGTTGGCCTCCGCCTGGCGCAGCGTGGCCACCT
CCGTGGAGACCCAGTTGACGGCCACCTACTTCCGAGTGCAAAAACTACGA
AAAGTCGGCTTCAGAGGCATGCACAGCACATTGGAGGACGTGCAGCTGGA
GGGCATGGAGATCAAGATCCTGCCGGCCCTGCAGGATAACTATATGTATC
TGATTGTAGACACGAAGACGCGCGAGGCGGCCGTGGTGGATCCCGTGGAG
CCGGAGCTGGTCATTAAGACGGTGCAGGAGCAGCAGCTGACCCTCAGCAA
GGTGCTGACCACGCACCATCACTGGGACCACGCCGGTGGCAATGAAAAGC
TGCTCAAGCTGTGGGAGAAGGAGCTGGACGTGTATGGCGGCGATGACCGC
ATCGGGGCATTGAACAAAAAGGTTCAGCAGGACGACACCTTCACCATTGG
TGGTCTGCATGTCAAGTGCTTGTCCACGCCGTGCCACACTACCGGCCACA
TCTGCTACCACATCACCGCGCAGCAGGGCAGCGGCGAGGGAGCCGTCTTC
ACCGGCGACACCCTCTTCCAGGGCGGATGCGGCCGCTTCTTCGAGGGCAC
TCCCGAGGAAATGTACGAGGCGCTGTGCACAAAGCTCTCCGCCTTGCCGG
ACGCCACAAAGGTGTTCTGTGGCCACGAGTACACGCTGCAGAACATGAGC
TTCGCCCGTCACGTCGAGCCCGACAACGAGGTCATCCAGCAGAGGATCGA
GTGGGCCAAGCACCGGCGCGCCTCCCAGGATCCCACTGTGCCCTCCACCA
TTGGCGAGGAGAAGTCCTGGAACCCCTTTATGCGCGTTCACGAAGCCACC
GTGCAGAAGCACGCTGGCGGAGCCACCGATCCCGTCGTCACCATGGGCAA
GCTGCGCAAGGAAAAGGACACCTTCAA
BO06459.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4365-PA | 918 | CG4365-RA | 1..911 | 17..927 | 4555 | 100 | Plus |
CG4365-PC | 1047 | CG4365-RC | 200..1040 | 87..927 | 4205 | 100 | Plus |
CG4365-PB | 816 | CG4365-RB | 1..809 | 119..927 | 4045 | 100 | Plus |
CG4365-PC | 1047 | CG4365-RC | 1..70 | 17..86 | 350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4365-RA | 1092 | CG4365-RA | 84..994 | 17..927 | 4555 | 100 | Plus |
CG4365-RC | 1231 | CG4365-RC | 308..1148 | 87..927 | 4205 | 100 | Plus |
CG4365-RB | 1013 | CG4365-RB | 75..915 | 87..927 | 4205 | 100 | Plus |
CG4365-RC | 1231 | CG4365-RC | 109..178 | 17..86 | 350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20799141..20799983 | 85..927 | 4215 | 100 | Plus |
3L | 28110227 | 3L | 20798790..20798859 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:46:52 has no hits.
BO06459.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:13 Download gff for
BO06459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-PA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:08 Download gff for
BO06459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-PA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:24 Download gff for
BO06459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 78..992 | 6..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:47 Download gff for
BO06459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 78..992 | 6..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:47 Download gff for
BO06459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20798784..20798859 | 6..86 | 93 | -> | Plus |
3L | 20799143..20799981 | 87..925 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:24 Download gff for
BO06459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20791884..20791959 | 6..86 | 93 | -> | Plus |
arm_3L | 20792243..20793081 | 87..925 | 100 | | Plus |
BO06459.complete Sequence
949 bp (949 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630409
> BO06459.complete
GAAGTTATCAGTCGACATGTTGGCCTCCGCCTGGCGCAGCGTGGCCACCT
CCGTGGAGACCCAGTTGACGGCCACCTACTTCCGAGTGCAAAAACTACGA
AAAGTCGGCTTCAGAGGCATGCACAGCACATTGGAGGACGTGCAGCTGGA
GGGCATGGAGATCAAGATCCTGCCGGCCCTGCAGGATAACTATATGTATC
TGATTGTAGACACGAAGACGCGCGAGGCGGCCGTGGTGGATCCCGTGGAG
CCGGAGCTGGTCATTAAGACGGTGCAGGAGCAGCAGCTGACCCTCAGCAA
GGTGCTGACCACGCACCATCACTGGGACCACGCCGGTGGCAATGAAAAGC
TGCTCAAGCTGTGGGAGAAGGAGCTGGACGTGTATGGCGGCGATGACCGC
ATCGGGGCATTGAACAAAAAGGTTCAGCAGGACGACACCTTCACCATTGG
TGGTCTGCATGTCAAGTGCTTGTCCACGCCGTGCCACACTACCGGCCACA
TCTGCTACCACATCACCGCGCAGCAGGGCAGCGGCGAGGGAGCCGTCTTC
ACCGGCGACACCCTCTTCCAGGGCGGATGCGGCCGCTTCTTCGAGGGCAC
TCCCGAGGAAATGTACGAGGCGCTGTGCACAAAGCTCTCCGCCTTGCCGG
ACGCCACAAAGGTGTTCTGTGGCCACGAGTACACGCTGCAGAACATGAGC
TTCGCCCGTCACGTCGAGCCCGACAACGAGGTCATCCAGCAGAGGATCGA
GTGGGCCAAGCACCGGCGCGCCTCCCAGGATCCCACTGTGCCCTCCACCA
TTGGCGAGGAGAAGTCCTGGAACCCCTTTATGCGCGTTCACGAAGCCACC
GTGCAGAAGCACGCTGGCGGAGCCACCGATCCCGTCGTCACCATGGGCAA
GCTGCGCAAGGAAAAGGACACCTTCAAAGCCGCAAGCTTTCTAGACCAT
BO06459.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4365-RA | 918 | CG4365-PA | 1..915 | 17..931 | 4575 | 100 | Plus |
CG4365-RC | 1047 | CG4365-PC | 200..1044 | 87..931 | 4225 | 100 | Plus |
CG4365-RB | 816 | CG4365-PB | 1..813 | 119..931 | 4065 | 100 | Plus |
CG4365-RC | 1047 | CG4365-PC | 1..70 | 17..86 | 350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4365-RA | 1092 | CG4365-RA | 84..998 | 17..931 | 4575 | 100 | Plus |
CG4365-RC | 1231 | CG4365-RC | 308..1152 | 87..931 | 4225 | 100 | Plus |
CG4365-RB | 1013 | CG4365-RB | 75..919 | 87..931 | 4225 | 100 | Plus |
CG4365-RC | 1231 | CG4365-RC | 109..178 | 17..86 | 350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20799141..20799987 | 85..931 | 4235 | 100 | Plus |
3L | 28110227 | 3L | 20798790..20798859 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:04:21 has no hits.
BO06459.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:20 Download gff for
BO06459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:13 Download gff for
BO06459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 78..1004 | 6..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:49 Download gff for
BO06459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 89..998 | 22..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:20 Download gff for
BO06459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 78..1004 | 6..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:00 Download gff for
BO06459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 89..998 | 22..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:00 Download gff for
BO06459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20798795..20798859 | 22..86 | 100 | -> | Plus |
3L | 20799143..20799987 | 87..933 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:49 Download gff for
BO06459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20791895..20791959 | 22..86 | 100 | -> | Plus |
arm_3L | 20792243..20793087 | 87..933 | 99 | | Plus |
BO06459.pep Sequence
Translation from 16 to 949
> BO06459.pep
MLASAWRSVATSVETQLTATYFRVQKLRKVGFRGMHSTLEDVQLEGMEIK
ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEQQLTLSKVLTTH
HHWDHAGGNEKLLKLWEKELDVYGGDDRIGALNKKVQQDDTFTIGGLHVK
CLSTPCHTTGHICYHITAQQGSGEGAVFTGDTLFQGGCGRFFEGTPEEMY
EALCTKLSALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHR
RASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPVVTMGKLRKEK
DTFKAASFLDH
BO06459.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4365-PA | 305 | CG4365-PA | 1..305 | 1..305 | 1621 | 100 | Plus |
CG4365-PC | 348 | CG4365-PC | 1..348 | 1..305 | 1564 | 87.4 | Plus |
CG4365-PB | 271 | CG4365-PB | 1..271 | 35..305 | 1453 | 100 | Plus |
CG30022-PB | 279 | CG30022-PB | 61..221 | 59..222 | 209 | 32.1 | Plus |