Clone BO06459 Report

Search the DGRC for BO06459

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG4365-RA
Protein status:BO06459.pep: validated full length
Sequenced Size:949

Clone Sequence Records

BO06459.3prime Sequence

923 bp (835 high quality bases) assembled on 2005-12-03

> BO06459.3prime
ATGGTCTAGAAAGCTTGCGGCTTTGAAGGTGTCCTTTTCCTTGCGCAGCT
TGCCCATGGTGACGACGGGATCGGTGGCTCCGCCAGCGTGCTTCTGCACG
GTGGCTTCGTGAACGCGCATAAAGGGGTTCCAGGACTTCTCCTCGCCAAT
GGTGGAGGGCACAGTGGGATCCTGGGAGGCGCGCCGGTGCTTGGCCCACT
CGATCCTCTGCTGGATGACCTCGTTGTCGGGCTCGACGTGACGGGCGAAG
CTCATGTTCTGCAGCGTGTACTCGTGGCCACAGAACACCTTTGTGGCGTC
CGGCAAGGCGGAGAGCTTTGTGCACAGCGCCTCGTACATTTCCTCGGGAG
TGCCCTCGAAGAAGCGGCCGCATCCGCCCTGGAAGAGGGTGTCGCCGGTG
AAGACGGCTCCCTCGCCGCTGCCCTGCTGCGCGGTGATGTGGTAGCAGAT
GTGGCCGGTAGTGTGGCACGGCGTGGACAAGCACTTGACATGCAGACCAC
CAATGGTGAAGGTGTCGTCCTGCTGAACCTTTTTGTTCAATGCCCCGATG
CGGTCATCGCCGCCATACACGTCCAGCTCCTTCTCCCACAGCTTGAGCAG
CTTTTCATTGCCACCGGCGTGGTCCCAGTGATGGTGCGTGGTCAGCACCT
TGCTGAGGGTCAGCTGCTGCTCCTGCACCGTCTTAATGACCAGCTCCGGC
TCCACGGGATCCACCACGGCCGCCTCGCGCGTCTTCGTGTCTACAATCAG
ATACATATAGTTATCCTGCAGGGCCGGCAGGATCTTGATCTCCATGCCCT
CCAGCTGCACGTCCTCCAATGTGCTGTGCATGCCTCTGAAGCCGACTTTT
CGTAGTTTTTGCACTCGGAAGTAGGTGGCCGTCAACTGGGTCTCCACGGA
GGTGGCCACGCTGCGCCAGGCGG

BO06459.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-PA 918 CG4365-RA 11..915 923..19 4525 100 Minus
CG4365-PC 1047 CG4365-RC 200..1044 863..19 4225 100 Minus
CG4365-PB 816 CG4365-RB 1..813 831..19 4065 100 Minus
CG4365-PC 1047 CG4365-RC 11..70 923..864 300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-RA 1092 CG4365-RA 94..998 923..19 4525 100 Minus
CG4365-RC 1231 CG4365-RC 308..1152 863..19 4225 100 Minus
CG4365-RB 1013 CG4365-RB 75..919 863..19 4225 100 Minus
CG4365-RC 1231 CG4365-RC 119..178 923..864 300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20799141..20799987 865..19 4235 100 Minus
3L 28110227 3L 20798800..20798859 923..864 300 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:58:40 has no hits.

BO06459.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:12 Download gff for BO06459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-PA 11..918 16..923 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:07 Download gff for BO06459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-PA 11..918 16..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:36 Download gff for BO06459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 94..1004 12..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:30:17 Download gff for BO06459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 94..1004 12..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:30:17 Download gff for BO06459.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20798800..20798859 864..923 100 -> Minus
3L 20799143..20799993 12..863 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:36 Download gff for BO06459.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20791900..20791959 864..923 100 -> Minus
arm_3L 20792243..20793093 12..863 99   Minus

BO06459.5prime Sequence

927 bp (808 high quality bases) assembled on 2005-12-03

> BO06459.5prime
GAAGTTATCAGTCGACATGTTGGCCTCCGCCTGGCGCAGCGTGGCCACCT
CCGTGGAGACCCAGTTGACGGCCACCTACTTCCGAGTGCAAAAACTACGA
AAAGTCGGCTTCAGAGGCATGCACAGCACATTGGAGGACGTGCAGCTGGA
GGGCATGGAGATCAAGATCCTGCCGGCCCTGCAGGATAACTATATGTATC
TGATTGTAGACACGAAGACGCGCGAGGCGGCCGTGGTGGATCCCGTGGAG
CCGGAGCTGGTCATTAAGACGGTGCAGGAGCAGCAGCTGACCCTCAGCAA
GGTGCTGACCACGCACCATCACTGGGACCACGCCGGTGGCAATGAAAAGC
TGCTCAAGCTGTGGGAGAAGGAGCTGGACGTGTATGGCGGCGATGACCGC
ATCGGGGCATTGAACAAAAAGGTTCAGCAGGACGACACCTTCACCATTGG
TGGTCTGCATGTCAAGTGCTTGTCCACGCCGTGCCACACTACCGGCCACA
TCTGCTACCACATCACCGCGCAGCAGGGCAGCGGCGAGGGAGCCGTCTTC
ACCGGCGACACCCTCTTCCAGGGCGGATGCGGCCGCTTCTTCGAGGGCAC
TCCCGAGGAAATGTACGAGGCGCTGTGCACAAAGCTCTCCGCCTTGCCGG
ACGCCACAAAGGTGTTCTGTGGCCACGAGTACACGCTGCAGAACATGAGC
TTCGCCCGTCACGTCGAGCCCGACAACGAGGTCATCCAGCAGAGGATCGA
GTGGGCCAAGCACCGGCGCGCCTCCCAGGATCCCACTGTGCCCTCCACCA
TTGGCGAGGAGAAGTCCTGGAACCCCTTTATGCGCGTTCACGAAGCCACC
GTGCAGAAGCACGCTGGCGGAGCCACCGATCCCGTCGTCACCATGGGCAA
GCTGCGCAAGGAAAAGGACACCTTCAA

BO06459.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-PA 918 CG4365-RA 1..911 17..927 4555 100 Plus
CG4365-PC 1047 CG4365-RC 200..1040 87..927 4205 100 Plus
CG4365-PB 816 CG4365-RB 1..809 119..927 4045 100 Plus
CG4365-PC 1047 CG4365-RC 1..70 17..86 350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-RA 1092 CG4365-RA 84..994 17..927 4555 100 Plus
CG4365-RC 1231 CG4365-RC 308..1148 87..927 4205 100 Plus
CG4365-RB 1013 CG4365-RB 75..915 87..927 4205 100 Plus
CG4365-RC 1231 CG4365-RC 109..178 17..86 350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20799141..20799983 85..927 4215 100 Plus
3L 28110227 3L 20798790..20798859 17..86 350 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:46:52 has no hits.

BO06459.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:13 Download gff for BO06459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-PA 1..909 17..925 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:08 Download gff for BO06459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-PA 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:24 Download gff for BO06459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 78..992 6..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:47 Download gff for BO06459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 78..992 6..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:47 Download gff for BO06459.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20798784..20798859 6..86 93 -> Plus
3L 20799143..20799981 87..925 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:24 Download gff for BO06459.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20791884..20791959 6..86 93 -> Plus
arm_3L 20792243..20793081 87..925 100   Plus

BO06459.complete Sequence

949 bp (949 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630409

> BO06459.complete
GAAGTTATCAGTCGACATGTTGGCCTCCGCCTGGCGCAGCGTGGCCACCT
CCGTGGAGACCCAGTTGACGGCCACCTACTTCCGAGTGCAAAAACTACGA
AAAGTCGGCTTCAGAGGCATGCACAGCACATTGGAGGACGTGCAGCTGGA
GGGCATGGAGATCAAGATCCTGCCGGCCCTGCAGGATAACTATATGTATC
TGATTGTAGACACGAAGACGCGCGAGGCGGCCGTGGTGGATCCCGTGGAG
CCGGAGCTGGTCATTAAGACGGTGCAGGAGCAGCAGCTGACCCTCAGCAA
GGTGCTGACCACGCACCATCACTGGGACCACGCCGGTGGCAATGAAAAGC
TGCTCAAGCTGTGGGAGAAGGAGCTGGACGTGTATGGCGGCGATGACCGC
ATCGGGGCATTGAACAAAAAGGTTCAGCAGGACGACACCTTCACCATTGG
TGGTCTGCATGTCAAGTGCTTGTCCACGCCGTGCCACACTACCGGCCACA
TCTGCTACCACATCACCGCGCAGCAGGGCAGCGGCGAGGGAGCCGTCTTC
ACCGGCGACACCCTCTTCCAGGGCGGATGCGGCCGCTTCTTCGAGGGCAC
TCCCGAGGAAATGTACGAGGCGCTGTGCACAAAGCTCTCCGCCTTGCCGG
ACGCCACAAAGGTGTTCTGTGGCCACGAGTACACGCTGCAGAACATGAGC
TTCGCCCGTCACGTCGAGCCCGACAACGAGGTCATCCAGCAGAGGATCGA
GTGGGCCAAGCACCGGCGCGCCTCCCAGGATCCCACTGTGCCCTCCACCA
TTGGCGAGGAGAAGTCCTGGAACCCCTTTATGCGCGTTCACGAAGCCACC
GTGCAGAAGCACGCTGGCGGAGCCACCGATCCCGTCGTCACCATGGGCAA
GCTGCGCAAGGAAAAGGACACCTTCAAAGCCGCAAGCTTTCTAGACCAT

BO06459.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-RA 918 CG4365-PA 1..915 17..931 4575 100 Plus
CG4365-RC 1047 CG4365-PC 200..1044 87..931 4225 100 Plus
CG4365-RB 816 CG4365-PB 1..813 119..931 4065 100 Plus
CG4365-RC 1047 CG4365-PC 1..70 17..86 350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-RA 1092 CG4365-RA 84..998 17..931 4575 100 Plus
CG4365-RC 1231 CG4365-RC 308..1152 87..931 4225 100 Plus
CG4365-RB 1013 CG4365-RB 75..919 87..931 4225 100 Plus
CG4365-RC 1231 CG4365-RC 109..178 17..86 350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20799141..20799987 85..931 4235 100 Plus
3L 28110227 3L 20798790..20798859 17..86 350 100 Plus
Blast to na_te.dros performed on 2014-11-27 17:04:21 has no hits.

BO06459.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:20 Download gff for BO06459.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 1..918 17..934 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:13 Download gff for BO06459.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 78..1004 6..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:49 Download gff for BO06459.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 89..998 22..933 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:20 Download gff for BO06459.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 78..1004 6..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:00 Download gff for BO06459.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 89..998 22..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:00 Download gff for BO06459.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20798795..20798859 22..86 100 -> Plus
3L 20799143..20799987 87..933 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:49 Download gff for BO06459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20791895..20791959 22..86 100 -> Plus
arm_3L 20792243..20793087 87..933 99   Plus

BO06459.pep Sequence

Translation from 16 to 949

> BO06459.pep
MLASAWRSVATSVETQLTATYFRVQKLRKVGFRGMHSTLEDVQLEGMEIK
ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEQQLTLSKVLTTH
HHWDHAGGNEKLLKLWEKELDVYGGDDRIGALNKKVQQDDTFTIGGLHVK
CLSTPCHTTGHICYHITAQQGSGEGAVFTGDTLFQGGCGRFFEGTPEEMY
EALCTKLSALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHR
RASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPVVTMGKLRKEK
DTFKAASFLDH

BO06459.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-PA 305 CG4365-PA 1..305 1..305 1621 100 Plus
CG4365-PC 348 CG4365-PC 1..348 1..305 1564 87.4 Plus
CG4365-PB 271 CG4365-PB 1..271 35..305 1453 100 Plus
CG30022-PB 279 CG30022-PB 61..221 59..222 209 32.1 Plus